Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007811

Physical Location & Seq

Genomic Coordinates Reverse (-)

83455692 .. 83459991

Gene Structure 4300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53686

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGAGCCTCCCTTTGGCGCGCTTCGTCCTTCCCTCTAGGCTCTTCTCAGAAGCCGCAACTACCGGAAAACGTAACGGTCGTCTTATTTCAACCCTCAAGAAAAGGAAATTTACTTCAGCTGCCACCCACAGAGCTCAACACAAGGCAGGTGAAGAGGTATTGGTGGTAGTTGGAGCTGGAGCAGCTGGGGTTTTTGGAGCAATTAGAGCTAAAACCCTGGCTCCTAATCTCAATGTGGTGCTCATTGAGAAAGCAAGGCCCCTAGCCAAGGTGAAAGTTTCTGGGGGAGGAAGGTGCAATGTGACAAATGGGCATTGTGTTGAATCCATGATGTTGGCAGAAAACTATCCGAGGGGTCATAAAGAATTGAAAGGAGCGTTCTTCAACACGCACGGGCCGGTGGATACCATGACTTGGTTTTCTGATCATGGGGTGGAGCTGAAGACTGAGGATGATGGAAGGGTGTTTCCTGTCAGCAACAGTTCGTCTACGATTATTGATTGTCTCATGTCTGAATCAACGCGGTTGGGAGTTTCTCTGCAGACTGGAAAAGCTGTGATAACTGCATCTCCTACTGATGGTGGAAAATTTCTTCTAGGCATTGAAAAGCGTACACCCAGTTCTGTTGAATATGTTGAAGCTGATTATCTTTTGATTGCCAGCGGTAATGGCAAGCAGGGTTACAGTCTTGCATCTCAGCTTGGTCATTTAATTGTCGATCCCGTACCAAGTCTATTTACTTTCAAGATTGAGGATCCACAGCTGGCCGACTTGTCAGGGATTACATTCCCTAAAGTCAAGGCAAAGCTGAAAACAGAGAGTGTCCAAAGGAATATACCACAGCTTACACAGGTTGGACCTGTGTTAGTCACACACTGGGGATTCAGTGGGCCAGCAATTCTTCGCTTATCTGCTTGGGGTGCCTGTGTTTTATCCCGTACAGGTTACAAAGGGACTCTTATTCTGGACTTTACACCTGATGTGCATATAGAAGATGTGAAATCAATCCTCACACAACACAAAAATAAGTTTGTGAAGCAAAAGGTAGCTAATTCATATCCTACAGAATTTGGCCTTGTGAAGAGATTTTGGAAATATATATTGGGTCGCCAGGGTTTACTTGGTGATATATTGTGGGCATCCATCTCAAAGGACTCATTAGTTTCTATTGCTCATATGTTAAAGCACTGTGACTTTTCTGTTAGAGGAAAGAGTCAATATAAGGATGAATTTGTCACTGCTGGTGGTGTTCCACTTTCTGAGATATCATTGAACACAATGGAAAGCAAAATACAGTCACGCCTATTCTTTGCAGGGGAGGTATTGAACGTTGATGGGATAACTGGTGGTTTCAATTTTCAGAATGCTTGGTCTGGGGGATATATTGCGGGAACTAGTATCGGTAAACAAGCGGTTAGTGCTAAACTCTGTGAGGCGAATTCAGCGAGCAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HI0933_like

Protein Analysis

485

Amino Acids

52.36

Weight (kDa)

9.48

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HI0933_like	PF03486	54 - 465	1e-62	HI0933-like protein Rossmann domain
HI0933_like_1st	PF22780	242 - 412	4.1e-35	HI0933-like protein barrel and H2TH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39940 AT5G39940 AT5G39940 AT5G39940
fragaria_vesca	FvH4_6g49390 FvH4_6g49390 FvH4_6g49390 FvH4_6g49390 FvH4_6g49390 FvH4_6g49390
prunus_persica	Prupe.3G272800_v2.0.a1
pyrus_communis	pycom111g03530
rosa_chinensis	RchiOBHm_Chr2g0169251
rosa_laevigata	RLG00000021846
rosa_multiflora	Rmu_co8375105.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082310
rosa_rugosa	Rorug02G0538600
rosa_samantha	Rh2AG610100 Rh2BG623000 Rh2BG623100 Rh2CG591500 Rh2DG633800 Rh2DG633900
rosa_wichuraiana	Rw2G050590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	920
AccB7I	CCANNNNNTGG	1 cut(s)	414
AccI	GTMKAC	1 cut(s)	488
AccII	CGCG	2 cut(s)	19, 523
AciI	CCGC	5 cut(s)	54, 523, 663, 1388, 1412
AclI	AACGTT	1 cut(s)	1329
AclWI	GGATC	3 cut(s)	713, 749, 762
AcoI	YGGCCR	1 cut(s)	765
AcsI	RAATTY	5 cut(s)	107, 587, 1067, 1229, 1438
AcuI	CTGAAG	2 cut(s)	99, 461
AfaI	GTAC	3 cut(s)	613, 726, 940
AfiI	CCNNNNNNNGG	4 cut(s)	13, 268, 414, 578
AhlI	ACTAGT	1 cut(s)	1394
AjnI	CCWGG	2 cut(s)	216, 1110
AjuI	GAANNNNNNNTTGG	2 cut(s)	1085, 1117
Alw21I	GWGCWC	2 cut(s)	136, 243
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	3 cut(s)	713, 749, 762
AoxI	GGCC	5 cut(s)	257, 395, 765, 890, 1072
ApeKI	GCWGC	2 cut(s)	119, 182
ApoI	RAATTY	5 cut(s)	107, 587, 1067, 1229, 1438
AspLEI	GCGC	2 cut(s)	19, 21
AspS9I	GGNCC	4 cut(s)	258, 395, 857, 890
AsuHPI	GGTGA	3 cut(s)	161, 283, 1136
AvaII	GGWCC	1 cut(s)	857
BamHI	GGATCC	1 cut(s)	754
BanI	GGYRCC	1 cut(s)	920
BanII	GRGCYC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	449
Bbv12I	GWGCWC	2 cut(s)	136, 243
BbvI	GCAGC	2 cut(s)	106, 194
BccI	CCATC	4 cut(s)	449, 572, 1151, 1328
BciT130I	CCWGG	2 cut(s)	218, 1112
BciVI	GTATCC	1 cut(s)	397
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	509
BcuI	ACTAGT	1 cut(s)	1394
BfaI	CTAG	5 cut(s)	36, 263, 596, 1395, 1456
BfmI	CTRYAG	2 cut(s)	539, 1062
BfuAI	ACCTGC	1 cut(s)	137
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	3 cut(s)	54, 120, 183
BlsI	GCNGC	3 cut(s)	55, 121, 184
Bme1390I	CCNGG	2 cut(s)	218, 1112
Bme18I	GGWCC	1 cut(s)	857
BmgT120I	GGNCC	4 cut(s)	258, 395, 857, 890
BmiI	GGNNCC	4 cut(s)	222, 260, 756, 922
BmrFI	CCNGG	2 cut(s)	218, 1112
BmrI	ACTGGG	2 cut(s)	612, 886
BmsI	GCATC	3 cut(s)	575, 701, 1148
BmuI	ACTGGG	2 cut(s)	612, 886
BpiI	GAAGAC	1 cut(s)	449
BpmI	CTGGAG	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	80
BsaJI	CCNNGG	4 cut(s)	216, 267, 350, 1111
BsaWI	WCCGGW	1 cut(s)	62
BsaXI	ACNNNNNCTCC	4 cut(s)	205, 235, 553, 583
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 268, 414, 578
Bse118I	RCCGGY	1 cut(s)	397
Bse1I	ACTGG	4 cut(s)	550, 618, 881, 1348
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	2 cut(s)	218, 1112
BseDI	CCNNGG	4 cut(s)	216, 267, 350, 1111
BseGI	GGATG	3 cut(s)	457, 1139, 1231
BseLI	CCNNNNNNNGG	4 cut(s)	13, 268, 414, 578
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	4 cut(s)	60, 438, 710, 1251
BseNI	ACTGG	4 cut(s)	550, 618, 881, 1348
BsePI	GCGCGC	1 cut(s)	17
BseXI	GCAGC	2 cut(s)	106, 194
BseYI	CCCAGC	1 cut(s)	185
Bsh1236I	CGCG	2 cut(s)	19, 523
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	5 cut(s)	259, 397, 767, 892, 1074
BshNI	GGYRCC	1 cut(s)	920
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	2 cut(s)	136, 243
BsiSI	CCGG	2 cut(s)	63, 398
BslFI	GGGAC	1 cut(s)	967
BslI	CCNNNNNNNGG	4 cut(s)	13, 268, 414, 578
BsmAI	GTCTC	1 cut(s)	509
BsmFI	GGGAC	1 cut(s)	967
BsmI	GAATGC	1 cut(s)	1369
BsnI	GGCC	5 cut(s)	259, 397, 767, 892, 1074
Bsp1286I	GDGCHC	2 cut(s)	136, 243
Bsp143I	GATC	3 cut(s)	424, 718, 754
BspACI	CCGC	5 cut(s)	54, 523, 663, 1388, 1412
BspANI	GGCC	5 cut(s)	259, 397, 767, 892, 1074
BspCNI	CTCAG	4 cut(s)	59, 439, 709, 1252
BspFNI	CGCG	2 cut(s)	19, 523
BspLI	GGNNCC	4 cut(s)	222, 260, 756, 922
BspMAI	CTGCAG	1 cut(s)	543
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	3 cut(s)	713, 749, 762
BspQI	GCTCTTC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	920
BsrDI	GCAATG	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	397
BsrI	ACTGG	4 cut(s)	550, 618, 881, 1348
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	4 cut(s)	216, 267, 350, 1111
BssHII	GCGCGC	1 cut(s)	17
BssMI	GATC	3 cut(s)	424, 718, 754
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	218, 1112
Bst4CI	ACNGT	5 cut(s)	77, 482, 686, 1190, 1296
Bst6I	CTCTTC	3 cut(s)	47, 147, 1076
BstC8I	GCNNGC	6 cut(s)	19, 661, 674, 765, 894, 1447
BstDEI	CTNAG	4 cut(s)	46, 447, 696, 1260
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	3 cut(s)	457, 1139, 1231
BstFNI	CGCG	2 cut(s)	19, 523
BstHHI	GCGC	2 cut(s)	19, 21
BstKTI	GATC	3 cut(s)	427, 721, 757
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	3 cut(s)	424, 718, 754
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	6 cut(s)	182, 206, 669, 920, 1418, 1442
BstNI	CCWGG	2 cut(s)	218, 1112
BstSCI	CCNGG	2 cut(s)	216, 1110
BstSFI	CTRYAG	2 cut(s)	539, 1062
BstUI	CGCG	2 cut(s)	19, 523
BstV1I	GCAGC	2 cut(s)	106, 194
BstV2I	GAAGAC	1 cut(s)	449
BstX2I	RGATCY	1 cut(s)	754
BstXI	CCANNNNNNTGG	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	754
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	5 cut(s)	259, 397, 767, 892, 1074
BtsCI	GGATG	3 cut(s)	457, 1139, 1231
BtsI	GCAGTG	1 cut(s)	1236
BtsIMutI	CAGTG	4 cut(s)	874, 892, 1186, 1236
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	6 cut(s)	19, 661, 674, 765, 894, 1447
CfoI	GCGC	2 cut(s)	19, 21
Cfr10I	RCCGGY	1 cut(s)	397
Cfr13I	GGNCC	4 cut(s)	258, 395, 857, 890
Csp6I	GTAC	3 cut(s)	612, 725, 939
CviAII	CATG	4 cut(s)	328, 409, 428, 508
CviQI	GTAC	3 cut(s)	612, 725, 939
DdeI	CTNAG	4 cut(s)	46, 447, 696, 1260
DpnI	GATC	3 cut(s)	426, 720, 756
DpnII	GATC	3 cut(s)	424, 718, 754
EaeI	YGGCCR	1 cut(s)	765
Eam1104I	CTCTTC	3 cut(s)	47, 147, 1076
EarI	CTCTTC	3 cut(s)	47, 147, 1076
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	1266
Eco47I	GGWCC	1 cut(s)	857
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	99, 461
EcoICRI	GAGCTC	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	1438
EcoRII	CCWGG	2 cut(s)	216, 1110
EcoRV	GATATC	1 cut(s)	1266
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	4 cut(s)	331, 412, 431, 511
FalI	AAGNNNNNCTT	2 cut(s)	942, 974
FaqI	GGGAC	1 cut(s)	967
FatI	CATG	4 cut(s)	327, 408, 427, 507
FauI	CCCGC	1 cut(s)	1381
FauNDI	CATATG	1 cut(s)	1176
FbaI	TGATCA	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	488
Fnu4HI	GCNGC	3 cut(s)	54, 120, 183
FokI	GGATG	3 cut(s)	464, 1126, 1238
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	3 cut(s)	54, 120, 183
FspBI	CTAG	5 cut(s)	36, 263, 596, 1395, 1456
GlaI	GCGC	2 cut(s)	18, 20
GluI	GCNGC	3 cut(s)	54, 120, 183
GsaI	CCCAGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	5 cut(s)	259, 397, 767, 892, 1074
HapII	CCGG	2 cut(s)	63, 398
HhaI	GCGC	2 cut(s)	19, 21
Hin1II	CATG	4 cut(s)	331, 412, 431, 511
Hin6I	GCGC	2 cut(s)	17, 19
HinP1I	GCGC	2 cut(s)	17, 19
HinfI	GANTC	6 cut(s)	323, 515, 882, 955, 1154, 1213
HpaII	CCGG	2 cut(s)	63, 398
HphI	GGTGA	3 cut(s)	161, 283, 1136
Hpy166II	GTNNAC	4 cut(s)	489, 614, 1118, 1406
Hpy188I	TCNGA	6 cut(s)	49, 351, 424, 514, 1261, 1362
Hpy188III	TCNNGA	3 cut(s)	97, 745, 965
Hpy8I	GTNNAC	4 cut(s)	489, 614, 1118, 1406
HpyAV	CCTTC	3 cut(s)	38, 285, 453
HpyCH4III	ACNGT	5 cut(s)	77, 482, 686, 1190, 1296
HpyCH4IV	ACGT	2 cut(s)	70, 1329
HpyCH4V	TGCA	6 cut(s)	297, 541, 566, 692, 985, 1313
HpyF10VI	GCNNNNNNNGC	6 cut(s)	182, 206, 669, 920, 1418, 1442
HpyF3I	CTNAG	4 cut(s)	46, 447, 696, 1260
HpySE526I	ACGT	2 cut(s)	70, 1329
Hsp92II	CATG	4 cut(s)	331, 412, 431, 511
HspAI	GCGC	2 cut(s)	17, 19
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	424, 718, 754
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	6 cut(s)	173, 179, 197, 226, 374, 436
Lsp1109I	GCAGC	2 cut(s)	106, 194
LweI	GCATC	3 cut(s)	575, 701, 1148
MaeI	CTAG	5 cut(s)	36, 263, 596, 1395, 1456
MaeII	ACGT	2 cut(s)	70, 1329
MaeIII	GTNAC	8 cut(s)	71, 301, 680, 868, 944, 1190, 1234, 1296
MalI	GATC	3 cut(s)	426, 720, 756
MboI	GATC	3 cut(s)	424, 718, 754
MboII	GAAGA	8 cut(s)	34, 164, 373, 454, 584, 893, 1004, 1093
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	2 cut(s)	136, 243
MlyI	GAGTC	3 cut(s)	949, 1148, 1222
MmeI	TCCRAC	2 cut(s)	151, 835
MseI	TTAA	2 cut(s)	710, 1181
MspA1I	CMGCKG	4 cut(s)	119, 185, 663, 763
MspI	CCGG	2 cut(s)	63, 398
MspR9I	CCNGG	2 cut(s)	218, 1112
Mva1269I	GAATGC	1 cut(s)	1369
MvaI	CCWGG	2 cut(s)	218, 1112
MvnI	CGCG	2 cut(s)	19, 523
MwoI	GCNNNNNNNGC	6 cut(s)	182, 206, 669, 920, 1418, 1442
NdeI	CATATG	1 cut(s)	1176
NdeII	GATC	3 cut(s)	424, 718, 754
NlaIII	CATG	4 cut(s)	331, 412, 431, 511
NlaIV	GGNNCC	4 cut(s)	222, 260, 756, 922
NmuCI	GTSAC	5 cut(s)	301, 868, 1190, 1234, 1296
PaqCI	CACCTGC	1 cut(s)	137
PauI	GCGCGC	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PctI	GAATGC	1 cut(s)	1369
PfeI	GAWTC	3 cut(s)	323, 515, 882
PflMI	CCANNNNNTGG	1 cut(s)	414
PkrI	GCNGC	3 cut(s)	55, 121, 184
PleI	GAGTC	3 cut(s)	949, 1148, 1221
PpsI	GAGTC	3 cut(s)	949, 1148, 1221
Psp124BI	GAGCTC	1 cut(s)	136
Psp1406I	AACGTT	1 cut(s)	1329
Psp6I	CCWGG	2 cut(s)	216, 1110
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	2 cut(s)	216, 1110
PspN4I	GGNNCC	4 cut(s)	222, 260, 756, 922
PspPI	GGNCC	4 cut(s)	258, 395, 857, 890
PsrI	GAACNNNNNNTAC	2 cut(s)	604, 636
PstI	CTGCAG	1 cut(s)	543
PsuI	RGATCY	1 cut(s)	754
PteI	GCGCGC	1 cut(s)	17
PvuII	CAGCTG	3 cut(s)	119, 185, 763
RsaI	GTAC	3 cut(s)	613, 726, 940
RsaNI	GTAC	3 cut(s)	612, 725, 939
SacI	GAGCTC	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	710, 1181
SatI	GCNGC	3 cut(s)	54, 120, 183
Sau3AI	GATC	3 cut(s)	424, 718, 754
Sau96I	GGNCC	4 cut(s)	258, 395, 857, 890
SchI	GAGTC	3 cut(s)	949, 1148, 1222
ScrFI	CCNGG	2 cut(s)	218, 1112
SduI	GDGCHC	2 cut(s)	136, 243
SfaNI	GCATC	3 cut(s)	575, 701, 1148
SfcI	CTRYAG	2 cut(s)	539, 1062
SinI	GGWCC	1 cut(s)	857
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SpeI	ACTAGT	1 cut(s)	1394
SsiI	CCGC	5 cut(s)	54, 523, 663, 1388, 1412
SspMI	CTAG	5 cut(s)	36, 263, 596, 1395, 1456
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	2 cut(s)	216, 1110
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	5 cut(s)	77, 482, 686, 1190, 1296
TaiI	ACGT	2 cut(s)	73, 1332
TaqI	TCGA	1 cut(s)	717
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	3 cut(s)	323, 515, 882
Tru1I	TTAA	2 cut(s)	710, 1181
Tru9I	TTAA	2 cut(s)	710, 1181
TscAI	CASTG	4 cut(s)	881, 892, 1193, 1243
TseFI	GTSAC	5 cut(s)	301, 868, 1190, 1234, 1296
TseI	GCWGC	2 cut(s)	119, 182
Tsp45I	GTSAC	5 cut(s)	301, 868, 1190, 1234, 1296
TspDTI	ATGAA	2 cut(s)	1044, 1242
TspRI	CASTG	4 cut(s)	881, 892, 1193, 1243
Van91I	CCANNNNNTGG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	857
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	5 cut(s)	107, 587, 1067, 1229, 1438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1118
XmiI	GTMKAC	1 cut(s)	488
XspI	CTAG	5 cut(s)	36, 263, 596, 1395, 1456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.