Rorug02G0538600

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001705
Physical Location & Seq
Reverse (-)
66777315 .. 66779970
2656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0538600.1

Sequence Viewer

Length: 1554 bp
ATGAAACAATTTGGGATTTTGTCGGTGTTCCTCTCACTAATAGTTCTCCCTATCCAATCTCTAAGTTCGACCAACACAACAACATGCCCCATAGATTTTAGCTATGTTCTTACTGTCCCCTTCAATTCCTCATCGTGCAAAAACTTCGAATTCCCTACCAAAACCCCCGAATTGGACGTCATTAAGAACTCATGTTGCCGTACCCTTTTATCTGTCCTTGGGATAGGCCTTGCTCAACACCTCAAAGACACTTCTCTTTTTCTACTCCCCAACATAGCCACATCAACGTCTTGCCTCCAAGACTACCGGTCCAAGCTCACCTCTATCTCCCTCCCTACCTATGTTGTTGATTCTTGCTTTGAGCCTTCACAGTTTATCACCAGCCCCAAAATCTGTGCAAGTATTGAGTCTTCCCAAGATTGGGTAGACAAGCTTAACCATAGCACTGCACTTGACTCTGCATGCAAGCCAGACCTCATGGATCACTCATCCTGCGATGCTTGCGTGGCGGCTGGCTTCAAAATTCAGCAACAATTAATCACCGTTGATGGTAACACTTCTCACTCTAGAGATTGTTGGATCTTTACAGTTCTTTATGCTGCTGGTATGATCAATGAGCTTGGACCTGAAAGTAGTGGCTCTTTATCGTGTATCTTTGGTTTATTATTGGATTCTCATGTCGATTCGAATAGAAGGAGCATTACCACTCTTGTAATTATACTAACCTCAGCAACAGCCGGATTTCTTATAATACTCTGTTCCTCTTTCTTATGGAAGAAGAAAACTCTGAGAAACAGAAGGGAGCACAGTAAGAGAACCATAAGGAAGTTTAATGCTGAAGATGGAGAAAATGATACAGAGTTACCGCTCTTTAGCTTAAGGAGTATATTAGAAGCTACAGACAATTTCGCTGAAGCTAATAAACTTGGAGAGGGAGGATTTGGCCCTGTTTATAAGGGAATTTTTCCTAAAAATCAGGAAGTAGCCATGAAAAGACTGTCAAAGAAGTCTGGTCAAGGACATCCAGAGTTTGTGAATGAGTTAAAGCTTATAGCCAAGCTCCAACATACCAATCTTGTTAGGCTCCTGGGTTGCTGTATTGATGAGGAGGAAATGATATTGGTTTACGAGTACATGCCCAATCGAAGTTTGGACAAATTTTTGTTTGGTATTGCTCACGGAATACTTTATATCCACAAGTACTCCAGATTGAAAATCATTCACAGGGATCTAAAAGCAAGCAATGTTCTCCTGGATGAAGAAATGTACCCCAAAATTTCCGACTTTGGAATGGCAAAGATTTTCGAGAAAAATCAAACTGAAGCAAATACAAACAGGGTTGTTGGGACATACGGCTACATGTCACCTGAGTATGCAAGCTATGGTAATTTCTCTGAGAAATCAGATGTATTCAGTTTTGGAGTGCTGCTGTTGGAGATTATAAGTGGAAAGAGGAATGCTGCTTTCTATCGCTTTGAAGATCCATTAACTCTTGCAGGATGGGTAAGTGAAAACTCGAGGCTTGGAAATTATGGAAAGAAGGAAGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF569

Protein Analysis

517

Amino Acids

57.76

Weight (kDa)

6.44

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPARK PF19160 24 - 192 9.5e-40 SPARK
Pkinase PF00069 304 - 485 1.5e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 307 - 485 2.7e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 749, 954, 1442
AatII GACGTC 1 cut(s) 180
AccBSI CCGCTC 1 cut(s) 868
AccI GTMKAC 1 cut(s) 426
AciI CCGC 2 cut(s) 509, 866
AclWI GGATC 4 cut(s) 489, 587, 1236, 1475
AcsI RAATTY 5 cut(s) 149, 522, 960, 1157, 1275
AcuI CTGAAG 3 cut(s) 858, 933, 1341
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 4 cut(s) 202, 1133, 1202, 1268
AfiI CCNNNNNNNGG 3 cut(s) 172, 420, 421
AflII CTTAAG 1 cut(s) 877
AflIII ACRYGT 1 cut(s) 1359
AgeI ACCGGT 1 cut(s) 306
AgsI TTSAA 4 cut(s) 124, 520, 1213, 1478
AhdI GACNNNNNGTC 1 cut(s) 307
AjnI CCWGG 2 cut(s) 1086, 1251
Alw21I GWGCWC 1 cut(s) 807
AlwI GGATC 4 cut(s) 489, 587, 1236, 1475
Ama87I CYCGRG 1 cut(s) 1516
AoxI GGCC 2 cut(s) 226, 943
ApeKI GCWGC 3 cut(s) 599, 1426, 1460
ApoI RAATTY 5 cut(s) 149, 522, 960, 1157, 1275
ArsI GACNNNNNNTTYG 2 cut(s) 162, 194
AseI ATTAAT 1 cut(s) 536
AsiGI ACCGGT 1 cut(s) 306
AspS9I GGNCC 3 cut(s) 309, 623, 944
AsuHPI GGTGA 4 cut(s) 310, 370, 532, 1356
AsuII TTCGAA 2 cut(s) 147, 686
AvaI CYCGRG 1 cut(s) 1516
AvaII GGWCC 2 cut(s) 309, 623
BarI GAAGNNNNNNTAC 4 cut(s) 394, 426, 685, 717
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 807
BbvCI CCTCAGC 1 cut(s) 727
BbvI GCAGC 3 cut(s) 586, 1413, 1447
BccI CCATC 3 cut(s) 542, 836, 1494
BceAI ACGGC 2 cut(s) 183, 1369
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 2 cut(s) 1088, 1253
BclI TGATCA 1 cut(s) 609
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 897
BfrI CTTAAG 1 cut(s) 877
BisI GCNGC 4 cut(s) 510, 600, 1427, 1461
BlsI GCNGC 4 cut(s) 511, 601, 1428, 1462
BmcAI AGTACT 1 cut(s) 1202
Bme1390I CCNGG 2 cut(s) 1088, 1253
Bme18I GGWCC 2 cut(s) 309, 623
BmeRI GACNNNNNGTC 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 1516
BmgT120I GGNCC 3 cut(s) 309, 623, 944
BmiI GGNNCC 1 cut(s) 1085
BmrFI CCNGG 2 cut(s) 1088, 1253
BmsI GCATC 1 cut(s) 487
BpiI GAAGAC 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 1189
Bpu10I CCTNAGC 1 cut(s) 727
Bpu14I TTCGAA 2 cut(s) 147, 686
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 217, 1087
BsaWI WCCGGW 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 1187, 1217
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 420, 421
Bse118I RCCGGY 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 1249
BseBI CCWGG 2 cut(s) 1088, 1253
BseDI CCNNGG 2 cut(s) 217, 1087
BseGI GGATG 4 cut(s) 488, 1021, 1261, 1505
BseLI CCNNNNNNNGG 3 cut(s) 172, 420, 421
BseMI GCAATG 1 cut(s) 1249
BseMII CTCAG 4 cut(s) 741, 779, 1359, 1386
BseRI GAGGAG 1 cut(s) 1121
BseXI GCAGC 3 cut(s) 586, 1413, 1447
BsgI GTGCAG 1 cut(s) 432
BshFI GGCC 2 cut(s) 228, 945
BshTI ACCGGT 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 807
BsiHKCI CYCGRG 1 cut(s) 1516
BsiSI CCGG 2 cut(s) 307, 738
BslFI GGGAC 2 cut(s) 101, 1360
BslI CCNNNNNNNGG 3 cut(s) 172, 420, 421
BsmFI GGGAC 2 cut(s) 101, 1360
BsmI GAATGC 1 cut(s) 1462
BsnI GGCC 2 cut(s) 228, 945
BsoBI CYCGRG 1 cut(s) 1516
Bsp119I TTCGAA 2 cut(s) 147, 686
Bsp1286I GDGCHC 1 cut(s) 807
Bsp143I GATC 5 cut(s) 481, 579, 609, 1228, 1480
BspACI CCGC 2 cut(s) 509, 866
BspANI GGCC 2 cut(s) 228, 945
BspCNI CTCAG 4 cut(s) 740, 780, 1360, 1387
BspLI GGNNCC 1 cut(s) 1085
BspPI GGATC 4 cut(s) 489, 587, 1236, 1475
BspT104I TTCGAA 2 cut(s) 147, 686
BspTI CTTAAG 1 cut(s) 877
BsrBI CCGCTC 1 cut(s) 868
BsrDI GCAATG 1 cut(s) 1249
BsrFI RCCGGY 1 cut(s) 306
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 217, 1087
BssMI GATC 5 cut(s) 481, 579, 609, 1228, 1480
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 217
Bst2UI CCWGG 2 cut(s) 1088, 1253
Bst4CI ACNGT 6 cut(s) 115, 372, 544, 589, 809, 999
Bst6I CTCTTC 1 cut(s) 1539
BstACI GRCGYC 1 cut(s) 177
BstAFI CTTAAG 1 cut(s) 877
BstBI TTCGAA 2 cut(s) 147, 686
BstC8I GCNNGC 6 cut(s) 463, 467, 502, 514, 1240, 1378
BstDEI CTNAG 5 cut(s) 62, 727, 788, 1368, 1395
BstF5I GGATG 4 cut(s) 488, 1021, 1261, 1505
BstKTI GATC 5 cut(s) 484, 582, 612, 1231, 1483
BstMBI GATC 5 cut(s) 481, 579, 609, 1228, 1480
BstMWI GCNNNNNNNGC 2 cut(s) 501, 506
BstNI CCWGG 2 cut(s) 1088, 1253
BstNSI RCATGY 4 cut(s) 87, 465, 1138, 1363
BstSCI CCNGG 2 cut(s) 1086, 1251
BstSFI CTRYAG 1 cut(s) 897
BstV1I GCAGC 3 cut(s) 586, 1413, 1447
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 3 cut(s) 579, 1228, 1480
BstYI RGATCY 3 cut(s) 579, 1228, 1480
BsuRI GGCC 2 cut(s) 228, 945
BtgZI GCGATG 1 cut(s) 510
BtsCI GGATG 4 cut(s) 488, 1021, 1261, 1505
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 444
Cac8I GCNNGC 6 cut(s) 463, 467, 502, 514, 1240, 1378
Cfr10I RCCGGY 1 cut(s) 306
Cfr13I GGNCC 3 cut(s) 309, 623, 944
Csp6I GTAC 4 cut(s) 201, 1132, 1201, 1267
CspAI ACCGGT 1 cut(s) 306
CviAII CATG 8 cut(s) 84, 192, 462, 478, 677, 988, 1135, 1360
CviQI GTAC 4 cut(s) 201, 1132, 1201, 1267
DdeI CTNAG 5 cut(s) 62, 727, 788, 1368, 1395
DpnI GATC 5 cut(s) 483, 581, 611, 1230, 1482
DpnII GATC 5 cut(s) 481, 579, 609, 1228, 1480
DriI GACNNNNNGTC 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 1539
Eam1105I GACNNNNNGTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 1539
Eco130I CCWWGG 1 cut(s) 217
Eco147I AGGCCT 1 cut(s) 228
Eco47I GGWCC 2 cut(s) 309, 623
Eco57I CTGAAG 3 cut(s) 858, 933, 1341
Eco88I CYCGRG 1 cut(s) 1516
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 1086, 1251
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 8 cut(s) 87, 195, 465, 481, 680, 991, 1138, 1363
FaqI GGGAC 2 cut(s) 101, 1360
FatI CATG 8 cut(s) 83, 191, 461, 477, 676, 987, 1134, 1359
FbaI TGATCA 1 cut(s) 609
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 4 cut(s) 510, 600, 1427, 1461
FokI GGATG 4 cut(s) 475, 1008, 1268, 1512
Fsp4HI GCNGC 4 cut(s) 510, 600, 1427, 1461
FspBI CTAG 1 cut(s) 567
GluI GCNGC 4 cut(s) 510, 600, 1427, 1461
GsuI CTGGAG 1 cut(s) 1189
HaeIII GGCC 2 cut(s) 228, 945
HapII CCGG 2 cut(s) 307, 738
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 8 cut(s) 87, 195, 465, 481, 680, 991, 1138, 1363
HindIII AAGCTT 2 cut(s) 431, 1046
HinfI GANTC 5 cut(s) 350, 407, 455, 671, 683
HpaII CCGG 2 cut(s) 307, 738
HphI GGTGA 4 cut(s) 310, 370, 532, 1356
Hpy166II GTNNAC 2 cut(s) 427, 1126
Hpy188I TCNGA 4 cut(s) 789, 1282, 1396, 1405
Hpy188III TCNNGA 5 cut(s) 567, 977, 1025, 1206, 1306
Hpy8I GTNNAC 2 cut(s) 427, 1126
HpyAV CCTTC 5 cut(s) 130, 375, 687, 792, 1534
HpyCH4III ACNGT 6 cut(s) 115, 372, 544, 589, 809, 999
HpyCH4IV ACGT 2 cut(s) 177, 287
HpyCH4V TGCA 7 cut(s) 138, 398, 449, 461, 465, 1376, 1496
HpyF10VI GCNNNNNNNGC 2 cut(s) 501, 506
HpyF3I CTNAG 5 cut(s) 62, 727, 788, 1368, 1395
HpySE526I ACGT 2 cut(s) 177, 287
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 8 cut(s) 87, 195, 465, 481, 680, 991, 1138, 1363
Ksp22I TGATCA 1 cut(s) 609
Kzo9I GATC 5 cut(s) 481, 579, 609, 1228, 1480
LmnI GCTCC 4 cut(s) 696, 802, 1065, 1089
Lsp1109I GCAGC 3 cut(s) 586, 1413, 1447
LweI GCATC 1 cut(s) 487
MaeI CTAG 1 cut(s) 567
MaeII ACGT 2 cut(s) 177, 287
MaeIII GTNAC 3 cut(s) 551, 861, 1362
MalI GATC 5 cut(s) 483, 581, 611, 1230, 1482
MbiI CCGCTC 1 cut(s) 868
MboI GATC 5 cut(s) 481, 579, 609, 1228, 1480
MboII GAAGA 6 cut(s) 402, 787, 790, 851, 1271, 1490
MflI RGATCY 3 cut(s) 579, 1228, 1480
MhlI GDGCHC 1 cut(s) 807
MlyI GAGTC 2 cut(s) 416, 449
MmeI TCCRAC 4 cut(s) 557, 1087, 1305, 1413
MseI TTAA 7 cut(s) 183, 435, 536, 831, 878, 1043, 1487
MspCI CTTAAG 1 cut(s) 877
MspI CCGG 2 cut(s) 307, 738
MspR9I CCNGG 2 cut(s) 1088, 1253
Mva1269I GAATGC 1 cut(s) 1462
MvaI CCWGG 2 cut(s) 1088, 1253
MwoI GCNNNNNNNGC 2 cut(s) 501, 506
NdeII GATC 5 cut(s) 481, 579, 609, 1228, 1480
NlaIII CATG 8 cut(s) 87, 195, 465, 481, 680, 991, 1138, 1363
NlaIV GGNNCC 1 cut(s) 1085
NmuCI GTSAC 1 cut(s) 1362
NspI RCATGY 4 cut(s) 87, 465, 1138, 1363
NspV TTCGAA 2 cut(s) 147, 686
PaeI GCATGC 1 cut(s) 465
PaeR7I CTCGAG 1 cut(s) 1516
PceI AGGCCT 1 cut(s) 228
PciI ACATGT 1 cut(s) 1359
PctI GAATGC 1 cut(s) 1462
PfeI GAWTC 3 cut(s) 350, 671, 683
PfoI TCCNGGA 1 cut(s) 1251
PinAI ACCGGT 1 cut(s) 306
PkrI GCNGC 4 cut(s) 511, 601, 1428, 1462
PleI GAGTC 2 cut(s) 415, 449
PpsI GAGTC 2 cut(s) 415, 449
PscI ACATGT 1 cut(s) 1359
PshBI ATTAAT 1 cut(s) 536
PsiI TTATAA 3 cut(s) 749, 954, 1442
Psp6I CCWGG 2 cut(s) 1086, 1251
PspGI CCWGG 2 cut(s) 1086, 1251
PspN4I GGNNCC 1 cut(s) 1085
PspPI GGNCC 3 cut(s) 309, 623, 944
PspXI VCTCGAGB 1 cut(s) 1516
PsuI RGATCY 3 cut(s) 579, 1228, 1480
RsaI GTAC 4 cut(s) 202, 1133, 1202, 1268
RsaNI GTAC 4 cut(s) 201, 1132, 1201, 1267
SaqAI TTAA 7 cut(s) 183, 435, 536, 831, 878, 1043, 1487
SatI GCNGC 4 cut(s) 510, 600, 1427, 1461
Sau3AI GATC 5 cut(s) 481, 579, 609, 1228, 1480
Sau96I GGNCC 3 cut(s) 309, 623, 944
ScaI AGTACT 1 cut(s) 1202
SchI GAGTC 2 cut(s) 416, 449
ScrFI CCNGG 2 cut(s) 1088, 1253
SduI GDGCHC 1 cut(s) 807
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 1 cut(s) 897
Sfr274I CTCGAG 1 cut(s) 1516
SfuI TTCGAA 2 cut(s) 147, 686
SinI GGWCC 2 cut(s) 309, 623
SlaI CTCGAG 1 cut(s) 1516
SmlI CTYRAG 2 cut(s) 877, 1516
SmoI CTYRAG 2 cut(s) 877, 1516
SphI GCATGC 1 cut(s) 465
SseBI AGGCCT 1 cut(s) 228
SsiI CCGC 2 cut(s) 509, 866
SspMI CTAG 1 cut(s) 567
StuI AGGCCT 1 cut(s) 228
StyD4I CCNGG 2 cut(s) 1086, 1251
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 6 cut(s) 115, 372, 544, 589, 809, 999
TaiI ACGT 2 cut(s) 180, 290
TaqI TCGA 7 cut(s) 68, 147, 681, 686, 1144, 1305, 1517
TatI WGTACW 2 cut(s) 1131, 1200
TauI GCSGC 1 cut(s) 512
TfiI GAWTC 3 cut(s) 350, 671, 683
Tru1I TTAA 7 cut(s) 183, 435, 536, 831, 878, 1043, 1487
Tru9I TTAA 7 cut(s) 183, 435, 536, 831, 878, 1043, 1487
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 1362
TseI GCWGC 3 cut(s) 599, 1426, 1460
Tsp45I GTSAC 1 cut(s) 1362
TspDTI ATGAA 3 cut(s) 17, 1004, 1272
TspGWI ACGGA 1 cut(s) 1194
TspRI CASTG 1 cut(s) 451
Vha464I CTTAAG 1 cut(s) 877
VpaK11BI GGWCC 2 cut(s) 309, 623
VspI ATTAAT 1 cut(s) 536
XapI RAATTY 5 cut(s) 149, 522, 960, 1157, 1275
XbaI TCTAGA 1 cut(s) 566
XceI RCATGY 4 cut(s) 87, 465, 1138, 1363
XcmI CCANNNNNNNNNTGG 1 cut(s) 1147
XhoI CTCGAG 1 cut(s) 1516
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 1 cut(s) 567
ZraI GACGTC 1 cut(s) 178
ZrmI AGTACT 1 cut(s) 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.