Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001705

Physical Location & Seq

Genomic Coordinates Forward (+)

2963827 .. 2964832

Gene Structure 1006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1045600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCCTCTCCCTTTCAGTTCCTCAAGTGCTGCCTCAAACTTTTGGCCATATTTTGCCTCTAATTCCTTCTCTTCCTATTCCGTCTTATTTTCTGATTCTTCCATTGAGCACCGCCACCGACGGCAATGCGTAAATTTGCAGCCGATTTTATTTGAGATCAGTGCATGCAATAACTGTATGGATTTTCTCAAAAAAGCCAAGGTGGTACGATTTCGAAGCCACCAAAACAAATACCTATTAGCCGATGACGATCAAGTGTCGGTGTGGCAGAACCGCGAGGGAACGTTGCAGAACGCGCGGTGGACGGTGGAGTTAATTAGCGATAATCCAAATGCATTGCGATTGAAGAGCTGTTTCGGGAAATACTTAACGGCGTTAAGCACGCCGTTCATTCTAGGGATCAAATGCAACAAGGTCCTGCAAACCACGCCAAAGACGTTGGATCCGATAGTGGAATGGGAGCCGGTAAGAGACGGGTTCAAGTGGAAGATGAAGACGGCGAACGGGCAATTCTTGCGTGCAAGCGGGTGTAACGTGCCGCCTTGGAAAGACACGATCACGCACGACAATCCGTGTAGAGGTGTGATGAGAGATTGGGTTCTGTGGGATGTGGAAGTTGTGGAGATTCGTGAACAACAAGAACAAGAACAAAGGAACGTTGATAATGTTAATGATAGTGCTAGTTGTTATAGTACTACTGCAACACAAGATCCAACAGAACCGGATCCACCGTCTGTTTCGCGGTCGGAATCTTCACAAACACAGCCAGACTCTCCAGCCGGCGTTGATCTTTCTTCACCCAAAGATCATATATCGGATTCGGATAAAAAAAATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF569

Protein Analysis

280

Amino Acids

31.64

Weight (kDa)

5.99

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF569	PF04601	60 - 202	1.1e-51	Beta-trefoil domain of unknown function (DUF569)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01311 AT3G01311 AT3G28630 AT3G28630
fragaria_vesca	FvH4_6g49410 FvH4_6g49420
malus_domestica	MD09G1045600.v1.1 MD17G1046300.v1.1
prunus_persica	Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273100_v2.0.a1
pyrus_communis	pycom111g03500
rosa_chinensis	RchiOBHm_Chr2g0169291 RchiOBHm_Chr2g0169301 RchiOBHm_Chr2g0169311
rosa_laevigata	RLG00000021852 RLG00000021853 RLG00000021854
rosa_multiflora	Rmu_co8313715.1_g000001 Rmu_ssc0000399.1_g000006 Rmu_ssc0000399.1_g000007 Rmu_ssc0000399.1_g000010
rosa_roxburghii	Rroxscaffold_2G00082250 Rroxscaffold_2G00082270 Rroxscaffold_2G00082280
rosa_rugosa	Rorug02G0538600 Rorug02G0538700 Rorug02G0538800 Rorug02G0538900 Rorug02G0539000 Rorug02G0539100 Rorug02G0539300 Rorug02G0539300
rosa_samantha	Rh2AG610400 Rh2AG610500 Rh2AG610600 Rh2BG623300 Rh2BG623600 Rh2BG623800 Rh2CG591700 Rh2CG592000 Rh2CG592100 Rh2DG634300 Rh2DG634600 Rh2DG634700
rosa_wichuraiana	Rw2G050620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	276, 296, 298, 742
AciI	CCGC	6 cut(s)	112, 274, 298, 525, 539, 742
AclI	AACGTT	2 cut(s)	284, 657
AclWI	GGATC	6 cut(s)	407, 437, 450, 704, 719, 732
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	133
AfaI	GTAC	2 cut(s)	207, 694
AfiI	CCNNNNNNNGG	1 cut(s)	578
AgsI	TTSAA	2 cut(s)	346, 481
AluBI	AGCT	1 cut(s)	351
AluI	AGCT	1 cut(s)	351
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	465
AlwI	GGATC	6 cut(s)	407, 437, 450, 704, 719, 732
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	29, 139
ApoI	RAATTY	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	789
AsuII	TTCGAA	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	415
BalI	TGGCCA	1 cut(s)	46
BamHI	GGATCC	2 cut(s)	442, 724
BbsI	GAAGAC	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	16, 151
BceAI	ACGGC	4 cut(s)	137, 370, 387, 513
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	2 cut(s)	395, 681
BisI	GCNGC	3 cut(s)	30, 140, 539
BlsI	GCNGC	3 cut(s)	31, 141, 540
BmcAI	AGTACT	1 cut(s)	694
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	3 cut(s)	444, 462, 726
BpiI	GAAGAC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	759
Bpu14I	TTCGAA	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	198, 542
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse118I	RCCGGY	2 cut(s)	463, 779
Bse3DI	GCAATG	2 cut(s)	131, 335
Bse8I	GATNNNNATC	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	198, 542
BseGI	GGATG	1 cut(s)	613
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMI	GCAATG	2 cut(s)	131, 335
BseXI	GCAGC	2 cut(s)	16, 151
Bsh1236I	CGCG	4 cut(s)	276, 296, 298, 742
Bsh1285I	CGRYCG	1 cut(s)	746
BshFI	GGCC	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	746
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	3 cut(s)	464, 722, 780
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	1 cut(s)	465
BsmBI	CGTCTC	1 cut(s)	465
BsnI	GGCC	1 cut(s)	46
Bsp119I	TTCGAA	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	9 cut(s)	156, 250, 399, 442, 555, 709, 724, 787, 805
BspACI	CCGC	6 cut(s)	112, 274, 298, 525, 539, 742
BspANI	GGCC	1 cut(s)	46
BspFNI	CGCG	4 cut(s)	276, 296, 298, 742
BspLI	GGNNCC	3 cut(s)	444, 462, 726
BspPI	GGATC	6 cut(s)	407, 437, 450, 704, 719, 732
BspQI	GCTCTTC	1 cut(s)	341
BspT104I	TTCGAA	1 cut(s)	214
BsrDI	GCAATG	2 cut(s)	131, 335
BsrFI	RCCGGY	2 cut(s)	463, 779
BssAI	RCCGGY	2 cut(s)	463, 779
BssECI	CCNNGG	2 cut(s)	198, 542
BssMI	GATC	9 cut(s)	156, 250, 399, 442, 555, 709, 724, 787, 805
BssT1I	CCWWGG	2 cut(s)	198, 542
Bst4CI	ACNGT	3 cut(s)	176, 307, 732
Bst6I	CTCTTC	2 cut(s)	76, 341
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstBI	TTCGAA	1 cut(s)	214
BstC8I	GCNNGC	5 cut(s)	166, 383, 519, 523, 781
BstF5I	GGATG	1 cut(s)	613
BstFNI	CGCG	4 cut(s)	276, 296, 298, 742
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	9 cut(s)	159, 253, 402, 445, 558, 712, 727, 790, 808
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	9 cut(s)	156, 250, 399, 442, 555, 709, 724, 787, 805
BstMCI	CGRYCG	1 cut(s)	746
BstMWI	GCNNNNNNNGC	3 cut(s)	295, 427, 514
BstNSI	RCATGY	1 cut(s)	168
BstUI	CGCG	4 cut(s)	276, 296, 298, 742
BstV1I	GCAGC	2 cut(s)	16, 151
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	3 cut(s)	442, 709, 724
BstYI	RGATCY	3 cut(s)	442, 709, 724
BsuRI	GGCC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	613
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	5 cut(s)	166, 383, 519, 523, 781
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	2 cut(s)	463, 779
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	206, 693
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	9 cut(s)	46, 142, 197, 219, 242, 351, 463, 766, 779
CviKI_1	RGCY	9 cut(s)	46, 142, 197, 219, 242, 351, 463, 766, 779
CviQI	GTAC	2 cut(s)	206, 693
DpnI	GATC	9 cut(s)	158, 252, 401, 444, 557, 711, 726, 789, 807
DpnII	GATC	9 cut(s)	156, 250, 399, 442, 555, 709, 724, 787, 805
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	2 cut(s)	76, 341
EarI	CTCTTC	2 cut(s)	76, 341
Eco130I	CCWWGG	2 cut(s)	198, 542
Eco47I	GGWCC	1 cut(s)	415
EcoO109I	RGGNCCY	1 cut(s)	415
EcoT14I	CCWWGG	2 cut(s)	198, 542
EcoT22I	ATGCAT	1 cut(s)	337
ErhI	CCWWGG	2 cut(s)	198, 542
Esp3I	CGTCTC	1 cut(s)	465
FaeI	CATG	1 cut(s)	168
FaiI	YATR	7 cut(s)	49, 166, 179, 690, 810, 812, 838
FatI	CATG	1 cut(s)	164
FauI	CCCGC	1 cut(s)	518
Fnu4HI	GCNGC	3 cut(s)	30, 140, 539
FokI	GGATG	1 cut(s)	620
Fsp4HI	GCNGC	3 cut(s)	30, 140, 539
FspBI	CTAG	2 cut(s)	395, 681
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	3 cut(s)	30, 140, 539
GsuI	CTGGAG	1 cut(s)	759
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	3 cut(s)	464, 722, 780
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HinfI	GANTC	5 cut(s)	95, 625, 749, 770, 818
HpaII	CCGG	3 cut(s)	464, 722, 780
HphI	GGTGA	1 cut(s)	789
Hpy166II	GTNNAC	2 cut(s)	303, 632
Hpy188I	TCNGA	5 cut(s)	94, 447, 748, 817, 823
Hpy188III	TCNNGA	2 cut(s)	358, 629
Hpy8I	GTNNAC	2 cut(s)	303, 632
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	3 cut(s)	176, 307, 732
HpyCH4IV	ACGT	4 cut(s)	284, 437, 534, 657
HpyCH4V	TGCA	9 cut(s)	139, 164, 168, 289, 335, 408, 421, 521, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	295, 427, 514
HpySE526I	ACGT	4 cut(s)	284, 437, 534, 657
Hsp92II	CATG	1 cut(s)	168
HspAI	GCGC	1 cut(s)	296
KroI	GCCGGC	1 cut(s)	779
KroNI	GCCGGC	1 cut(s)	781
Kzo9I	GATC	9 cut(s)	156, 250, 399, 442, 555, 709, 724, 787, 805
LguI	GCTCTTC	1 cut(s)	341
LmnI	GCTCC	1 cut(s)	460
LpnPI	CCDG	6 cut(s)	431, 477, 735, 780, 789, 793
Lsp1109I	GCAGC	2 cut(s)	16, 151
MaeI	CTAG	2 cut(s)	395, 681
MaeII	ACGT	4 cut(s)	284, 437, 534, 657
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	9 cut(s)	158, 252, 401, 444, 557, 711, 726, 789, 807
MboI	GATC	9 cut(s)	156, 250, 399, 442, 555, 709, 724, 787, 805
MboII	GAAGA	7 cut(s)	63, 90, 358, 499, 505, 744, 786
MflI	RGATCY	3 cut(s)	442, 709, 724
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	46
MluCI	AATT	4 cut(s)	61, 133, 315, 509
MluNI	TGGCCA	1 cut(s)	46
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	3 cut(s)	420, 726, 737
MnlI	CCTC	6 cut(s)	15, 31, 43, 67, 271, 572
Mox20I	TGGCCA	1 cut(s)	46
Mph1103I	ATGCAT	1 cut(s)	337
MroNI	GCCGGC	1 cut(s)	779
MscI	TGGCCA	1 cut(s)	46
MseI	TTAA	4 cut(s)	314, 368, 377, 669
Msp20I	TGGCCA	1 cut(s)	46
MspI	CCGG	3 cut(s)	464, 722, 780
MvnI	CGCG	4 cut(s)	276, 296, 298, 742
MwoI	GCNNNNNNNGC	3 cut(s)	295, 427, 514
NaeI	GCCGGC	1 cut(s)	781
NdeII	GATC	9 cut(s)	156, 250, 399, 442, 555, 709, 724, 787, 805
NgoMIV	GCCGGC	1 cut(s)	779
NlaIII	CATG	1 cut(s)	168
NlaIV	GGNNCC	3 cut(s)	444, 462, 726
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	1 cut(s)	168
NspV	TTCGAA	1 cut(s)	214
PaeI	GCATGC	1 cut(s)	168
PciSI	GCTCTTC	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	2 cut(s)	434, 443
PdiI	GCCGGC	1 cut(s)	781
PfeI	GAWTC	4 cut(s)	95, 625, 749, 818
PkrI	GCNGC	3 cut(s)	31, 141, 540
PleI	GAGTC	1 cut(s)	764
PpsI	GAGTC	1 cut(s)	764
PpuMI	RGGWCCY	1 cut(s)	415
Psp1406I	AACGTT	2 cut(s)	284, 657
Psp5II	RGGWCCY	1 cut(s)	415
PspN4I	GGNNCC	3 cut(s)	444, 462, 726
PspPI	GGNCC	1 cut(s)	415
PspPPI	RGGWCCY	1 cut(s)	415
PsuI	RGATCY	3 cut(s)	442, 709, 724
RsaI	GTAC	2 cut(s)	207, 694
RsaNI	GTAC	2 cut(s)	206, 693
SapI	GCTCTTC	1 cut(s)	341
SaqAI	TTAA	4 cut(s)	314, 368, 377, 669
SatI	GCNGC	3 cut(s)	30, 140, 539
Sau3AI	GATC	9 cut(s)	156, 250, 399, 442, 555, 709, 724, 787, 805
Sau96I	GGNCC	1 cut(s)	415
ScaI	AGTACT	1 cut(s)	694
SchI	GAGTC	1 cut(s)	764
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	9 cut(s)	204, 237, 287, 353, 417, 440, 537, 583, 660
SfuI	TTCGAA	1 cut(s)	214
SinI	GGWCC	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SphI	GCATGC	1 cut(s)	168
Sse9I	AATT	4 cut(s)	61, 133, 315, 509
SsiI	CCGC	6 cut(s)	112, 274, 298, 525, 539, 742
SspMI	CTAG	2 cut(s)	395, 681
StyI	CCWWGG	2 cut(s)	198, 542
TaaI	ACNGT	3 cut(s)	176, 307, 732
TaiI	ACGT	4 cut(s)	287, 440, 537, 660
TaqI	TCGA	1 cut(s)	214
TasI	AATT	4 cut(s)	61, 133, 315, 509
TatI	WGTACW	1 cut(s)	692
TauI	GCSGC	1 cut(s)	541
TfiI	GAWTC	4 cut(s)	95, 625, 749, 818
Tru1I	TTAA	4 cut(s)	314, 368, 377, 669
Tru9I	TTAA	4 cut(s)	314, 368, 377, 669
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	2 cut(s)	29, 139
TspDTI	ATGAA	2 cut(s)	379, 506
TspGWI	ACGGA	2 cut(s)	70, 561
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	1 cut(s)	133
XceI	RCATGY	1 cut(s)	168
XspI	CTAG	2 cut(s)	395, 681
ZrmI	AGTACT	1 cut(s)	694
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.