Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001705

Physical Location & Seq

Genomic Coordinates Reverse (-)

37022501 .. 37024035

Gene Structure 1535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAGTTTTTCAAAAAAGCTAGAGTGATACGGTTGCGAAGCCACCATGACAAATATCTAATAGCAGAGGATGATCAAGAGTCTGTATGCCAAGATCGTGATGGAACGGTGAGAAATGCTAGATGGACAGTGGAGATTACCAAAAATGGTACTTTACGTTTCAAAAGCGTTTATGAAAAATACTTAACAGCTTCTAATATGCCATTCCGTCTAGGATTGAGAGGCAAGAAAGTTTTACAAACCTTACCAAAGAGACTGGATTCTTCCTTGGAATGGGAGCCTGTAAGAGAGGGATACCAAATTAAGCTCAAGACACCCTATGGTCAGTTCTTGCGTGCAAATGGCGGCGTACCGCCTTGGAGAAACTCCATCACGCATGATGTCCCTCATAGATCAGCAAGACAGGATTGGATTTTGTGGGATATAGATGTTGTGGAGCTTAAACGAGACTCTCCTGAACATCCATCAATGGCTGCGGCAGAGCCCGCTCCTCCTGCAAGGGCACAATCCCCTCCTGCAAAGGCACAATCCCCTCATGCAGAGCTGGCTCGTGCAAGGGCACAATCCCCTCCTTCAAAGGCACAATCCGCTCATGCAAAAGCACAATCCCCTCGTGCAGCGCCACAATCCCCTCCTGCAGTGGAAGAACCCCCTCCTCCACCACCTGAATTACCTGATGAAGAGATTCCAGAATCAAGCACTTCGACTAAAATTGAGCTTAGGTCTCTCCAACTTGGCCAAGAAGAGTCAGGGAAGTCATTTGATCATGGTTCGCCAATGAAAAAGGATGGAAGAATGATCTTCTATCATGTAGCAGATGATATAGGAGAGGCTCCTGACGATGGAACACAAGATGTTTCCTTTTTATTCAAAGGTAGTGGGGTAGAGGACTTGAAGAAAATGCTGAAGGAAGAGACAGGGCTCGAAGATTTTCAAGTATGTTCACGCAATCCACTGAATGGCCAACTTTATCCACTTCGCTTACATCTTCCTCCAAACAACCATGATATGCATGTTGTGGTGGTTCCCTCCTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF569

Protein Analysis

347

Amino Acids

38.83

Weight (kDa)

6.88

Isoelectric Point (pI)

71.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF569	PF04601	1 - 140	2.8e-64	Beta-trefoil domain of unknown function (DUF569)
Ubiq_DUF_assoc	PF22932	264 - 342	6.1e-08	DUF569 associated ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01311 AT3G01311 AT3G28630 AT3G28630
fragaria_vesca	FvH4_6g49410 FvH4_6g49420
malus_domestica	MD09G1045600.v1.1 MD17G1046300.v1.1
prunus_persica	Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273100_v2.0.a1
pyrus_communis	pycom111g03500
rosa_chinensis	RchiOBHm_Chr2g0169291 RchiOBHm_Chr2g0169301 RchiOBHm_Chr2g0169311
rosa_laevigata	RLG00000021852 RLG00000021853 RLG00000021854
rosa_multiflora	Rmu_co8313715.1_g000001 Rmu_ssc0000399.1_g000006 Rmu_ssc0000399.1_g000007 Rmu_ssc0000399.1_g000010
rosa_roxburghii	Rroxscaffold_2G00082250 Rroxscaffold_2G00082270 Rroxscaffold_2G00082280
rosa_rugosa	Rorug02G0538600 Rorug02G0538700 Rorug02G0538800 Rorug02G0538900 Rorug02G0539000 Rorug02G0539100 Rorug02G0539300 Rorug02G0539300
rosa_samantha	Rh2AG610400 Rh2AG610500 Rh2AG610600 Rh2BG623300 Rh2BG623600 Rh2BG623800 Rh2CG591700 Rh2CG592000 Rh2CG592100 Rh2DG634300 Rh2DG634600 Rh2DG634700
rosa_wichuraiana	Rw2G050620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	959
AccBSI	CCGCTC	2 cut(s)	488, 590
AciI	CCGC	5 cut(s)	345, 353, 476, 486, 588
AcoI	YGGCCR	2 cut(s)	736, 961
AcuI	CTGAAG	1 cut(s)	926
AfaI	GTAC	2 cut(s)	151, 351
AfiI	CCNNNNNNNGG	3 cut(s)	273, 842, 959
AgsI	TTSAA	6 cut(s)	13, 163, 576, 871, 895, 935
AluBI	AGCT	6 cut(s)	20, 191, 307, 439, 544, 718
AluI	AGCT	6 cut(s)	20, 191, 307, 439, 544, 718
Alw26I	GTCTC	4 cut(s)	247, 441, 729, 908
AoxI	GGCC	2 cut(s)	736, 961
ApeKI	GCWGC	2 cut(s)	473, 617
Asp700I	GAANNNNTTC	2 cut(s)	684, 930
AspLEI	GCGC	1 cut(s)	622
AsuHPI	GGTGA	1 cut(s)	121
BaeGI	GKGCMC	2 cut(s)	505, 562
BalI	TGGCCA	2 cut(s)	738, 963
BanII	GRGCYC	2 cut(s)	486, 924
BauI	CACGAG	2 cut(s)	549, 612
BbvI	GCAGC	2 cut(s)	460, 629
BccI	CCATC	6 cut(s)	95, 117, 377, 472, 782, 836
BciVI	GTATCC	1 cut(s)	287
BclI	TGATCA	2 cut(s)	73, 763
BcoDI	GTCTC	4 cut(s)	247, 441, 729, 908
BfaI	CTAG	3 cut(s)	21, 120, 212
BfmI	CTRYAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	623
BfuI	GTATCC	1 cut(s)	287
BisI	GCNGC	4 cut(s)	346, 474, 477, 618
BlsI	GCNGC	4 cut(s)	347, 475, 478, 619
BmiI	GGNNCC	3 cut(s)	279, 834, 1026
Bpu10I	CCTNAGC	1 cut(s)	719
BpuEI	CTTGAG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	729
BsaJI	CCNNGG	2 cut(s)	267, 356
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 842, 959
Bse1I	ACTGG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	267, 356
BseGI	GGATG	3 cut(s)	76, 460, 793
BseLI	CCNNNNNNNGG	3 cut(s)	273, 842, 959
BseNI	ACTGG	1 cut(s)	261
BseRI	GAGGAG	2 cut(s)	480, 645
BseSI	GKGCMC	2 cut(s)	505, 562
BseXI	GCAGC	2 cut(s)	460, 629
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	2 cut(s)	738, 963
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	3 cut(s)	273, 842, 959
BsmAI	GTCTC	4 cut(s)	247, 441, 729, 908
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	738, 963
Bso31I	GGTCTC	1 cut(s)	729
Bsp1286I	GDGCHC	4 cut(s)	486, 505, 562, 924
Bsp143I	GATC	5 cut(s)	73, 94, 392, 763, 798
BspACI	CCGC	5 cut(s)	345, 353, 476, 486, 588
BspANI	GGCC	2 cut(s)	738, 963
BspLI	GGNNCC	3 cut(s)	279, 834, 1026
BspMAI	CTGCAG	1 cut(s)	640
BspTNI	GGTCTC	1 cut(s)	729
BsrBI	CCGCTC	2 cut(s)	488, 590
BsrI	ACTGG	1 cut(s)	261
BssECI	CCNNGG	2 cut(s)	267, 356
BssMI	GATC	5 cut(s)	73, 94, 392, 763, 798
BssSI	CACGAG	2 cut(s)	549, 612
BssT1I	CCWWGG	2 cut(s)	267, 356
Bst2BI	CACGAG	2 cut(s)	549, 612
Bst4CI	ACNGT	3 cut(s)	33, 109, 130
Bst6I	CTCTTC	3 cut(s)	675, 738, 906
BstC8I	GCNNGC	3 cut(s)	336, 486, 546
BstDEI	CTNAG	1 cut(s)	719
BstF5I	GGATG	3 cut(s)	76, 460, 793
BstH2I	RGCGCY	1 cut(s)	623
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	5 cut(s)	76, 97, 395, 766, 801
BstMAI	GTCTC	4 cut(s)	247, 441, 729, 908
BstMBI	GATC	5 cut(s)	73, 94, 392, 763, 798
BstMWI	GCNNNNNNNGC	4 cut(s)	485, 494, 545, 587
BstNSI	RCATGY	1 cut(s)	1016
BstSFI	CTRYAG	1 cut(s)	636
BstSLI	GKGCMC	2 cut(s)	505, 562
BstV1I	GCAGC	2 cut(s)	460, 629
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	738, 963
BtsCI	GGATG	3 cut(s)	76, 460, 793
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	3 cut(s)	135, 645, 953
Cac8I	GCNNGC	3 cut(s)	336, 486, 546
CfoI	GCGC	1 cut(s)	622
Csp6I	GTAC	2 cut(s)	150, 350
CspCI	CAANNNNNGTGG	2 cut(s)	859, 894
CviAII	CATG	8 cut(s)	47, 377, 536, 593, 767, 809, 1004, 1013
CviQI	GTAC	2 cut(s)	150, 350
DdeI	CTNAG	1 cut(s)	719
DpnI	GATC	5 cut(s)	75, 96, 394, 765, 800
DpnII	GATC	5 cut(s)	73, 94, 392, 763, 798
EaeI	YGGCCR	2 cut(s)	736, 961
Eam1104I	CTCTTC	3 cut(s)	675, 738, 906
EarI	CTCTTC	3 cut(s)	675, 738, 906
Eco130I	CCWWGG	2 cut(s)	267, 356
Eco24I	GRGCYC	2 cut(s)	486, 924
Eco31I	GGTCTC	1 cut(s)	729
Eco57I	CTGAAG	1 cut(s)	926
EcoT14I	CCWWGG	2 cut(s)	267, 356
EcoT22I	ATGCAT	1 cut(s)	1014
EcoT38I	GRGCYC	2 cut(s)	486, 924
ErhI	CCWWGG	2 cut(s)	267, 356
FaeI	CATG	8 cut(s)	50, 380, 539, 596, 770, 812, 1007, 1016
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	8 cut(s)	46, 376, 535, 592, 766, 808, 1003, 1012
FauI	CCCGC	1 cut(s)	493
FbaI	TGATCA	2 cut(s)	73, 763
Fnu4HI	GCNGC	4 cut(s)	346, 474, 477, 618
FokI	GGATG	3 cut(s)	83, 447, 800
FriOI	GRGCYC	2 cut(s)	486, 924
Fsp4HI	GCNGC	4 cut(s)	346, 474, 477, 618
FspBI	CTAG	3 cut(s)	21, 120, 212
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	4 cut(s)	346, 474, 477, 618
HaeII	RGCGCY	1 cut(s)	623
HaeIII	GGCC	2 cut(s)	738, 963
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	8 cut(s)	50, 380, 539, 596, 770, 812, 1007, 1016
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HinfI	GANTC	6 cut(s)	80, 260, 449, 685, 692, 746
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	944
Hpy188III	TCNNGA	6 cut(s)	77, 98, 310, 455, 689, 836
Hpy8I	GTNNAC	1 cut(s)	944
HpyAV	CCTTC	2 cut(s)	582, 901
HpyCH4III	ACNGT	3 cut(s)	33, 109, 130
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	9 cut(s)	338, 497, 518, 539, 554, 596, 617, 638, 1012
HpyF10VI	GCNNNNNNNGC	4 cut(s)	485, 494, 545, 587
HpyF3I	CTNAG	1 cut(s)	719
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	8 cut(s)	50, 380, 539, 596, 770, 812, 1007, 1016
HspAI	GCGC	1 cut(s)	620
Ksp22I	TGATCA	2 cut(s)	73, 763
Kzo9I	GATC	5 cut(s)	73, 94, 392, 763, 798
LmnI	GCTCC	4 cut(s)	277, 436, 493, 838
Lsp1109I	GCAGC	2 cut(s)	460, 629
MaeI	CTAG	3 cut(s)	21, 120, 212
MaeII	ACGT	1 cut(s)	157
MalI	GATC	5 cut(s)	75, 96, 394, 765, 800
MbiI	CCGCTC	2 cut(s)	488, 590
MboI	GATC	5 cut(s)	73, 94, 392, 763, 798
MhlI	GDGCHC	4 cut(s)	486, 505, 562, 924
MlsI	TGGCCA	2 cut(s)	738, 963
MluCI	AATT	3 cut(s)	300, 668, 711
MluNI	TGGCCA	2 cut(s)	738, 963
MlyI	GAGTC	3 cut(s)	89, 443, 755
MmeI	TCCRAC	1 cut(s)	754
Mox20I	TGGCCA	2 cut(s)	738, 963
Mph1103I	ATGCAT	1 cut(s)	1014
MroXI	GAANNNNTTC	2 cut(s)	684, 930
MscI	TGGCCA	2 cut(s)	738, 963
MseI	TTAA	3 cut(s)	185, 303, 441
Msp20I	TGGCCA	2 cut(s)	738, 963
MwoI	GCNNNNNNNGC	4 cut(s)	485, 494, 545, 587
NdeII	GATC	5 cut(s)	73, 94, 392, 763, 798
NlaIII	CATG	8 cut(s)	50, 380, 539, 596, 770, 812, 1007, 1016
NlaIV	GGNNCC	3 cut(s)	279, 834, 1026
NsiI	ATGCAT	1 cut(s)	1014
NspI	RCATGY	1 cut(s)	1016
PdmI	GAANNNNTTC	2 cut(s)	684, 930
PfeI	GAWTC	3 cut(s)	260, 685, 692
PflMI	CCANNNNNTGG	1 cut(s)	959
PkrI	GCNGC	4 cut(s)	347, 475, 478, 619
PleI	GAGTC	3 cut(s)	88, 443, 754
PpsI	GAGTC	3 cut(s)	88, 443, 754
PspN4I	GGNNCC	3 cut(s)	279, 834, 1026
PstI	CTGCAG	1 cut(s)	640
RsaI	GTAC	2 cut(s)	151, 351
RsaNI	GTAC	2 cut(s)	150, 350
SaqAI	TTAA	3 cut(s)	185, 303, 441
SatI	GCNGC	4 cut(s)	346, 474, 477, 618
Sau3AI	GATC	5 cut(s)	73, 94, 392, 763, 798
SchI	GAGTC	3 cut(s)	89, 443, 755
SduI	GDGCHC	4 cut(s)	486, 505, 562, 924
SfcI	CTRYAG	1 cut(s)	636
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	3 cut(s)	300, 668, 711
SsiI	CCGC	5 cut(s)	345, 353, 476, 486, 588
SspMI	CTAG	3 cut(s)	21, 120, 212
StyI	CCWWGG	2 cut(s)	267, 356
TaaI	ACNGT	3 cut(s)	33, 109, 130
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	704, 924
TasI	AATT	3 cut(s)	300, 668, 711
TauI	GCSGC	2 cut(s)	348, 479
TfiI	GAWTC	3 cut(s)	260, 685, 692
Tru1I	TTAA	3 cut(s)	185, 303, 441
Tru9I	TTAA	3 cut(s)	185, 303, 441
TscAI	CASTG	3 cut(s)	135, 645, 960
TseI	GCWGC	2 cut(s)	473, 617
TspDTI	ATGAA	3 cut(s)	189, 693, 794
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	3 cut(s)	135, 645, 960
Van91I	CCANNNNNTGG	1 cut(s)	959
XceI	RCATGY	1 cut(s)	1016
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XmnI	GAANNNNTTC	2 cut(s)	684, 930
XspI	CTAG	3 cut(s)	21, 120, 212
Zsp2I	ATGCAT	1 cut(s)	1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.