Rh2CG592100

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001705
Physical Location & Seq
Reverse (-)
76823183 .. 76824365
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG592100.1

Sequence Viewer

Length: 696 bp
ATGGAGTTTTTCAAAAAAGCCAAGGTCGTACGTTTCCGGAGCCACCACAACAAGTACCTATTAGCCGGCGACGACGAAGAGTCCGTTTGGCAAGAGCGTGAGGGACACGTGAGGAACGCAAGATGGAAGGTGGAGATCAACGAGAGCGGAACAGCCATACGTCTGAAGAGCTGTTATGGAAAGTACTTAACGGCGTCAAACACGCCAGGACGACTGGGAATGAAGAGCAAGAAAGTGGTGCAGACGCTGCCAGAGACGTTGGATTCGACCGTTGAGTGGGAGCCAATCAGAGAAGGGTTCAAGGTGAGGCTGAAGATGGCAGGCCATGGCCAGTTTTTGAGAGCCAATGGGGGTGTGCCACCGTGGCGCAACTCCATCACGCATGATACTGCTCACCGGAGCGGGGCAAAGGTATGGGGGTTGTGGGATGTGGACGTGGTGGAGATAGCCATGGATCAACTTCCGGCCCCACCGAAGAAAACAAAGCCGGATGGTGATGAAACGAATGATGGTGATTCGCAACAACCGGACGCTCCGTCGGAGATTGACATGACATGGTCGCCCCCGAAACAAAATTCAGATAGTAAAGAGAGAAAAATAGGCCGTGGAGTTGTTAGAACCAATGATCTATACTCTTGCTTTTCCATGTGTACTTGTCCAACAGTTTATGATGAGAAAGGATCAAAACAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF569

Protein Analysis

231

Amino Acids

26.09

Weight (kDa)

8.79

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF569 PF04601 1 - 142 8.2e-59 Beta-trefoil domain of unknown function (DUF569)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 147, 402
AccIII TCCGGA 1 cut(s) 36
AciI CCGC 2 cut(s) 147, 402
AclWI GGATC 2 cut(s) 462, 688
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 1 cut(s) 574
AcuI CTGAAG 2 cut(s) 185, 332
AcvI CACGTG 1 cut(s) 109
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 4 cut(s) 30, 56, 185, 652
AfiI CCNNNNNNNGG 2 cut(s) 276, 403
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 2 cut(s) 13, 301
AhdI GACNNNNNGTC 2 cut(s) 79, 535
AjiI CACGTC 1 cut(s) 436
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 2 cut(s) 462, 688
AlwNI CAGNNNCTG 1 cut(s) 247
Aor13HI TCCGGA 1 cut(s) 36
AoxI GGCC 4 cut(s) 322, 328, 465, 601
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 574
ArsI GACNNNNNNTTYG 2 cut(s) 247, 279
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 466
AsuHPI GGTGA 4 cut(s) 316, 386, 506, 524
BalI TGGCCA 1 cut(s) 330
BbrPI CACGTG 1 cut(s) 109
BbvI GCAGC 1 cut(s) 234
BccI CCATC 5 cut(s) 117, 310, 383, 485, 503
BceAI ACGGC 2 cut(s) 207, 588
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 248
BglI GCCNNNNNGGC 1 cut(s) 364
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 207
BmeRI GACNNNNNGTC 2 cut(s) 79, 535
BmgBI CACGTC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 466
BmiI GGNNCC 3 cut(s) 41, 282, 468
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 109
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 5 cut(s) 21, 325, 362, 450, 604
BsaWI WCCGGW 3 cut(s) 36, 396, 526
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 403
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 2 cut(s) 219, 331
BseAI TCCGGA 1 cut(s) 36
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 5 cut(s) 21, 325, 362, 450, 604
BseGI GGATG 2 cut(s) 433, 496
BseLI CCNNNNNNNGG 2 cut(s) 276, 403
BseNI ACTGG 2 cut(s) 219, 331
BseXI GCAGC 1 cut(s) 234
BsgI GTGCAG 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 4 cut(s) 324, 330, 467, 603
BsiEI CGRYCG 1 cut(s) 270
BsiSI CCGG 6 cut(s) 37, 66, 397, 464, 488, 527
BsiWI CGTACG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 276, 403
BsmAI GTCTC 1 cut(s) 248
BsmBI CGTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 117
BsnI GGCC 4 cut(s) 324, 330, 467, 603
Bsp13I TCCGGA 1 cut(s) 36
Bsp143I GATC 4 cut(s) 135, 454, 625, 680
Bsp19I CCATGG 2 cut(s) 325, 450
BspACI CCGC 2 cut(s) 147, 402
BspANI GGCC 4 cut(s) 324, 330, 467, 603
BspEI TCCGGA 1 cut(s) 36
BspLI GGNNCC 3 cut(s) 41, 282, 468
BspPI GGATC 2 cut(s) 462, 688
BspQI GCTCTTC 2 cut(s) 161, 218
BsrBI CCGCTC 2 cut(s) 147, 402
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 2 cut(s) 219, 331
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 5 cut(s) 21, 325, 362, 450, 604
BssMI GATC 4 cut(s) 135, 454, 625, 680
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 3 cut(s) 21, 325, 450
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 3 cut(s) 271, 363, 664
Bst6I CTCTTC 3 cut(s) 72, 161, 218
BstACI GRCGYC 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 247
BstBAI YACGTR 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 67, 322
BstDSI CCRYGG 4 cut(s) 325, 362, 450, 604
BstF5I GGATG 2 cut(s) 433, 496
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 4 cut(s) 138, 457, 628, 683
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 4 cut(s) 135, 454, 625, 680
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 247, 364
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 234
BsuRI GGCC 4 cut(s) 324, 330, 467, 603
BtgI CCRYGG 4 cut(s) 325, 362, 450, 604
BtrI CACGTC 1 cut(s) 436
BtsCI GGATG 2 cut(s) 433, 496
Cac8I GCNNGC 2 cut(s) 67, 322
CaiI CAGNNNCTG 1 cut(s) 247
CfoI GCGC 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 466
CseI GACGC 3 cut(s) 183, 253, 539
Csp6I GTAC 4 cut(s) 29, 55, 184, 651
CviAII CATG 6 cut(s) 326, 383, 451, 550, 555, 646
CviQI GTAC 4 cut(s) 29, 55, 184, 651
DpnI GATC 4 cut(s) 137, 456, 627, 682
DpnII GATC 4 cut(s) 135, 454, 625, 680
DriI GACNNNNNGTC 2 cut(s) 79, 535
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 3 cut(s) 72, 161, 218
Eam1105I GACNNNNNGTC 2 cut(s) 79, 535
EarI CTCTTC 3 cut(s) 72, 161, 218
Eco130I CCWWGG 3 cut(s) 21, 325, 450
Eco57I CTGAAG 2 cut(s) 185, 332
Eco72I CACGTG 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 3 cut(s) 21, 325, 450
ErhI CCWWGG 3 cut(s) 21, 325, 450
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 6 cut(s) 329, 386, 454, 553, 558, 649
FaqI GGGAC 1 cut(s) 117
FatI CATG 6 cut(s) 325, 382, 450, 549, 554, 645
FauI CCCGC 1 cut(s) 395
Fnu4HI GCNGC 1 cut(s) 248
FokI GGATG 2 cut(s) 440, 503
Fsp4HI GCNGC 1 cut(s) 248
GlaI GCGC 1 cut(s) 368
GluI GCNGC 1 cut(s) 248
HaeIII GGCC 4 cut(s) 324, 330, 467, 603
HapII CCGG 6 cut(s) 37, 66, 397, 464, 488, 527
HgaI GACGC 3 cut(s) 183, 253, 539
HhaI GCGC 1 cut(s) 369
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 6 cut(s) 329, 386, 454, 553, 558, 649
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HinfI GANTC 3 cut(s) 80, 263, 515
HpaII CCGG 6 cut(s) 37, 66, 397, 464, 488, 527
HphI GGTGA 4 cut(s) 316, 386, 506, 524
Hpy166II GTNNAC 2 cut(s) 433, 651
Hpy188I TCNGA 4 cut(s) 165, 290, 541, 580
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 2 cut(s) 433, 651
Hpy99I CGWCG 3 cut(s) 74, 77, 541
HpyAV CCTTC 2 cut(s) 121, 287
HpyCH4III ACNGT 3 cut(s) 271, 363, 664
HpyCH4IV ACGT 5 cut(s) 31, 108, 160, 257, 435
HpyCH4V TGCA 1 cut(s) 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 364
HpySE526I ACGT 5 cut(s) 31, 108, 160, 257, 435
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 6 cut(s) 329, 386, 454, 553, 558, 649
HspAI GCGC 1 cut(s) 367
Kpn2I TCCGGA 1 cut(s) 36
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 135, 454, 625, 680
LguI GCTCTTC 2 cut(s) 161, 218
LmnI GCTCC 4 cut(s) 39, 280, 399, 538
Lsp1109I GCAGC 1 cut(s) 234
MaeII ACGT 5 cut(s) 31, 108, 160, 257, 435
MalI GATC 4 cut(s) 137, 456, 627, 682
MbiI CCGCTC 2 cut(s) 147, 402
MboI GATC 4 cut(s) 135, 454, 625, 680
MboII GAAGA 5 cut(s) 89, 178, 235, 325, 487
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 1 cut(s) 574
MluNI TGGCCA 1 cut(s) 330
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 3 cut(s) 240, 519, 683
MnlI CCTC 3 cut(s) 94, 105, 300
Mox20I TGGCCA 1 cut(s) 330
MroI TCCGGA 1 cut(s) 36
MroNI GCCGGC 1 cut(s) 65
MscI TGGCCA 1 cut(s) 330
MseI TTAA 2 cut(s) 188, 694
Msp20I TGGCCA 1 cut(s) 330
MspI CCGG 6 cut(s) 37, 66, 397, 464, 488, 527
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 247, 364
NaeI GCCGGC 1 cut(s) 67
NcoI CCATGG 2 cut(s) 325, 450
NdeII GATC 4 cut(s) 135, 454, 625, 680
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 6 cut(s) 329, 386, 454, 553, 558, 649
NlaIV GGNNCC 3 cut(s) 41, 282, 468
PciSI GCTCTTC 2 cut(s) 161, 218
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 263
PdiI GCCGGC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 263, 515
Pfl23II CGTACG 1 cut(s) 28
PflFI GACNNNGTC 1 cut(s) 556
PkrI GCNGC 1 cut(s) 249
PleI GAGTC 1 cut(s) 88
PmaCI CACGTG 1 cut(s) 109
PmlI CACGTG 1 cut(s) 109
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 205
PspCI CACGTG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 205
PspLI CGTACG 1 cut(s) 28
PspN4I GGNNCC 3 cut(s) 41, 282, 468
PspPI GGNCC 1 cut(s) 466
PstNI CAGNNNCTG 1 cut(s) 247
PsyI GACNNNGTC 1 cut(s) 556
RsaI GTAC 4 cut(s) 30, 56, 185, 652
RsaNI GTAC 4 cut(s) 29, 55, 184, 651
SapI GCTCTTC 2 cut(s) 161, 218
SaqAI TTAA 2 cut(s) 188, 694
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 4 cut(s) 135, 454, 625, 680
Sau96I GGNCC 1 cut(s) 466
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 207
Sse9I AATT 1 cut(s) 574
SsiI CCGC 2 cut(s) 147, 402
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 3 cut(s) 21, 325, 450
TaaI ACNGT 3 cut(s) 271, 363, 664
TaiI ACGT 5 cut(s) 34, 111, 163, 260, 438
TaqI TCGA 1 cut(s) 266
TasI AATT 1 cut(s) 574
TatI WGTACW 2 cut(s) 183, 650
TfiI GAWTC 2 cut(s) 263, 515
Tru1I TTAA 2 cut(s) 188, 694
Tru9I TTAA 2 cut(s) 188, 694
TseI GCWGC 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 236, 513
TspGWI ACGGA 2 cut(s) 73, 525
Tth111I GACNNNGTC 1 cut(s) 556
XapI RAATTY 1 cut(s) 574
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.