Rroxscaffold_2G00082250

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001705
Physical Location & Seq
Forward (+)
5146367 .. 5147062
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082250.1

Sequence Viewer

Length: 696 bp
ATGGAGTTTTTCAAAAAAGCCAAGGTCGTACGTTTCCGGAGCCACCACAACAAGTACCTATTAGCCGGCGACGACGAAGAGTCCGTTTGGCCAGAGCGTGAGGGACACGTGAGGAACGCAAGATGGAAGGTGGAGATCAACGAGAGCGGACCAGCCATACGTCTGAAGAGCTGTTATGGAAAGTACTTAACGGCGTCAAACACGCCGGGACGACTGGGAATGAAGAGCAAGAAAGTGGTGCAGACGTTGCCAGAGACGTTGGATTCGACCGTTGAGTGGGAGCCAATCAGAGAAGGGTTCAAGATGAGGCTGAAGATGGCAGGCCATGGCCAGTTTTTGAGAGCCAATGGGGGTGTGCCACCGTGGCGCAACTCCATCACGCATGATACTGCTCACCGGAGCGCGGCAAAGGTATGGGGGTTGTGGGATGTGGACGTGGTGGAGATAGCCATGGATCAACTTCCGGCCCCACCGAAGAAAACAAAGCCGGATGGTGGTGAAACGAATGATGGTGATTCGCAACAACCGGACGCTCCGTCGGAGATTGACATGACATGGTCGCCGCCGAAACAAAATTCAGATAGTAAAGAGAGAAAAATAGGCCGTGGAGTAGTTAGAACCAATGATCTATACTCTTGCTTTTCCATGTGTACTTGTCCAACAGTTTATGATGAGAAAGGATCAAAACAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF569

Protein Analysis

231

Amino Acids

26.05

Weight (kDa)

8.95

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF569 PF04601 1 - 142 1.2e-57 Beta-trefoil domain of unknown function (DUF569)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 147
AccII CGCG 1 cut(s) 404
AccIII TCCGGA 1 cut(s) 36
AciI CCGC 3 cut(s) 147, 404, 563
AclWI GGATC 2 cut(s) 462, 688
AcoI YGGCCR 2 cut(s) 89, 328
AcsI RAATTY 1 cut(s) 574
AcuI CTGAAG 2 cut(s) 185, 332
AcvI CACGTG 1 cut(s) 109
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 4 cut(s) 30, 56, 185, 652
AfiI CCNNNNNNNGG 3 cut(s) 276, 403, 494
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 2 cut(s) 13, 301
AhdI GACNNNNNGTC 2 cut(s) 79, 535
AjiI CACGTC 1 cut(s) 436
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 2 cut(s) 462, 688
Aor13HI TCCGGA 1 cut(s) 36
AoxI GGCC 5 cut(s) 89, 322, 328, 465, 601
ApoI RAATTY 1 cut(s) 574
ArsI GACNNNNNNTTYG 2 cut(s) 247, 279
AspLEI GCGC 2 cut(s) 369, 404
AspS9I GGNCC 2 cut(s) 149, 466
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 3 cut(s) 386, 509, 524
AvaII GGWCC 1 cut(s) 149
BalI TGGCCA 2 cut(s) 91, 330
BbrPI CACGTG 1 cut(s) 109
BccI CCATC 5 cut(s) 117, 310, 383, 485, 503
BceAI ACGGC 2 cut(s) 207, 588
BcnI CCSGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 248
BglI GCCNNNNNGGC 1 cut(s) 364
BisI GCNGC 2 cut(s) 405, 563
BlsI GCNGC 2 cut(s) 406, 564
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 149
BmeRI GACNNNNNGTC 2 cut(s) 79, 535
BmgBI CACGTC 1 cut(s) 436
BmgT120I GGNCC 2 cut(s) 149, 466
BmiI GGNNCC 3 cut(s) 41, 282, 468
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 207
BsaAI YACGTR 1 cut(s) 109
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 5 cut(s) 21, 325, 362, 450, 604
BsaWI WCCGGW 3 cut(s) 36, 396, 526
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 403, 494
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 2 cut(s) 219, 331
BseAI TCCGGA 1 cut(s) 36
BseDI CCNNGG 5 cut(s) 21, 325, 362, 450, 604
BseGI GGATG 2 cut(s) 433, 496
BseLI CCNNNNNNNGG 3 cut(s) 276, 403, 494
BseNI ACTGG 2 cut(s) 219, 331
BsgI GTGCAG 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 404
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 5 cut(s) 91, 324, 330, 467, 603
BsiEI CGRYCG 1 cut(s) 270
BsiSI CCGG 7 cut(s) 37, 66, 206, 397, 464, 488, 527
BsiWI CGTACG 1 cut(s) 28
BslFI GGGAC 2 cut(s) 117, 222
BslI CCNNNNNNNGG 3 cut(s) 276, 403, 494
BsmAI GTCTC 1 cut(s) 248
BsmBI CGTCTC 1 cut(s) 248
BsmFI GGGAC 2 cut(s) 117, 222
BsnI GGCC 5 cut(s) 91, 324, 330, 467, 603
Bsp13I TCCGGA 1 cut(s) 36
Bsp143I GATC 4 cut(s) 135, 454, 625, 680
Bsp19I CCATGG 2 cut(s) 325, 450
BspACI CCGC 3 cut(s) 147, 404, 563
BspANI GGCC 5 cut(s) 91, 324, 330, 467, 603
BspEI TCCGGA 1 cut(s) 36
BspFNI CGCG 1 cut(s) 404
BspLI GGNNCC 3 cut(s) 41, 282, 468
BspPI GGATC 2 cut(s) 462, 688
BspQI GCTCTTC 2 cut(s) 161, 218
BsrBI CCGCTC 1 cut(s) 147
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 2 cut(s) 219, 331
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 5 cut(s) 21, 325, 362, 450, 604
BssMI GATC 4 cut(s) 135, 454, 625, 680
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 3 cut(s) 21, 325, 450
Bst4CI ACNGT 3 cut(s) 271, 363, 664
Bst6I CTCTTC 3 cut(s) 72, 161, 218
BstACI GRCGYC 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 247
BstBAI YACGTR 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 67, 322
BstDSI CCRYGG 4 cut(s) 325, 362, 450, 604
BstF5I GGATG 2 cut(s) 433, 496
BstFNI CGCG 1 cut(s) 404
BstHHI GCGC 2 cut(s) 369, 404
BstKTI GATC 4 cut(s) 138, 457, 628, 683
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 4 cut(s) 135, 454, 625, 680
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 247, 364
BstSCI CCNGG 1 cut(s) 205
BstUI CGCG 1 cut(s) 404
BsuRI GGCC 5 cut(s) 91, 324, 330, 467, 603
BtgI CCRYGG 4 cut(s) 325, 362, 450, 604
BtrI CACGTC 1 cut(s) 436
BtsCI GGATG 2 cut(s) 433, 496
Cac8I GCNNGC 2 cut(s) 67, 322
CfoI GCGC 2 cut(s) 369, 404
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 149, 466
CseI GACGC 2 cut(s) 183, 539
Csp6I GTAC 4 cut(s) 29, 55, 184, 651
CviAII CATG 6 cut(s) 326, 383, 451, 550, 555, 646
CviQI GTAC 4 cut(s) 29, 55, 184, 651
DpnI GATC 4 cut(s) 137, 456, 627, 682
DpnII GATC 4 cut(s) 135, 454, 625, 680
DriI GACNNNNNGTC 2 cut(s) 79, 535
EaeI YGGCCR 2 cut(s) 89, 328
Eam1104I CTCTTC 3 cut(s) 72, 161, 218
Eam1105I GACNNNNNGTC 2 cut(s) 79, 535
EarI CTCTTC 3 cut(s) 72, 161, 218
Eco130I CCWWGG 3 cut(s) 21, 325, 450
Eco47I GGWCC 1 cut(s) 149
Eco57I CTGAAG 2 cut(s) 185, 332
Eco72I CACGTG 1 cut(s) 109
EcoT14I CCWWGG 3 cut(s) 21, 325, 450
ErhI CCWWGG 3 cut(s) 21, 325, 450
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 6 cut(s) 329, 386, 454, 553, 558, 649
FaqI GGGAC 2 cut(s) 117, 222
FatI CATG 6 cut(s) 325, 382, 450, 549, 554, 645
Fnu4HI GCNGC 2 cut(s) 405, 563
FokI GGATG 2 cut(s) 440, 503
Fsp4HI GCNGC 2 cut(s) 405, 563
GlaI GCGC 2 cut(s) 368, 403
GluI GCNGC 2 cut(s) 405, 563
HaeIII GGCC 5 cut(s) 91, 324, 330, 467, 603
HapII CCGG 7 cut(s) 37, 66, 206, 397, 464, 488, 527
HgaI GACGC 2 cut(s) 183, 539
HhaI GCGC 2 cut(s) 369, 404
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 6 cut(s) 329, 386, 454, 553, 558, 649
Hin6I GCGC 2 cut(s) 367, 402
HinP1I GCGC 2 cut(s) 367, 402
HinfI GANTC 3 cut(s) 80, 263, 515
HpaII CCGG 7 cut(s) 37, 66, 206, 397, 464, 488, 527
HphI GGTGA 3 cut(s) 386, 509, 524
Hpy166II GTNNAC 2 cut(s) 433, 651
Hpy188I TCNGA 4 cut(s) 165, 290, 541, 580
Hpy188III TCNNGA 2 cut(s) 37, 301
Hpy8I GTNNAC 2 cut(s) 433, 651
Hpy99I CGWCG 3 cut(s) 74, 77, 541
HpyAV CCTTC 2 cut(s) 121, 287
HpyCH4III ACNGT 3 cut(s) 271, 363, 664
HpyCH4IV ACGT 6 cut(s) 31, 108, 160, 245, 257, 435
HpyCH4V TGCA 1 cut(s) 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 364
HpySE526I ACGT 6 cut(s) 31, 108, 160, 245, 257, 435
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 6 cut(s) 329, 386, 454, 553, 558, 649
HspAI GCGC 2 cut(s) 367, 402
Kpn2I TCCGGA 1 cut(s) 36
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 135, 454, 625, 680
LguI GCTCTTC 2 cut(s) 161, 218
LmnI GCTCC 4 cut(s) 39, 280, 399, 538
MaeII ACGT 6 cut(s) 31, 108, 160, 245, 257, 435
MalI GATC 4 cut(s) 137, 456, 627, 682
MbiI CCGCTC 1 cut(s) 147
MboI GATC 4 cut(s) 135, 454, 625, 680
MboII GAAGA 5 cut(s) 89, 178, 235, 325, 487
MlsI TGGCCA 2 cut(s) 91, 330
MluCI AATT 1 cut(s) 574
MluNI TGGCCA 2 cut(s) 91, 330
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 3 cut(s) 240, 519, 683
MnlI CCTC 3 cut(s) 94, 105, 300
Mox20I TGGCCA 2 cut(s) 91, 330
MroI TCCGGA 1 cut(s) 36
MroNI GCCGGC 1 cut(s) 65
MscI TGGCCA 2 cut(s) 91, 330
MseI TTAA 2 cut(s) 188, 694
Msp20I TGGCCA 2 cut(s) 91, 330
MspI CCGG 7 cut(s) 37, 66, 206, 397, 464, 488, 527
MspR9I CCNGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 2 cut(s) 247, 364
NaeI GCCGGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 207
NcoI CCATGG 2 cut(s) 325, 450
NdeII GATC 4 cut(s) 135, 454, 625, 680
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 6 cut(s) 329, 386, 454, 553, 558, 649
NlaIV GGNNCC 3 cut(s) 41, 282, 468
PciSI GCTCTTC 2 cut(s) 161, 218
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 263
PdiI GCCGGC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 263, 515
Pfl23II CGTACG 1 cut(s) 28
PflFI GACNNNGTC 1 cut(s) 556
PkrI GCNGC 2 cut(s) 406, 564
PleI GAGTC 1 cut(s) 88
PmaCI CACGTG 1 cut(s) 109
PmlI CACGTG 1 cut(s) 109
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 109
PspCI CACGTG 1 cut(s) 109
PspLI CGTACG 1 cut(s) 28
PspN4I GGNNCC 3 cut(s) 41, 282, 468
PspPI GGNCC 2 cut(s) 149, 466
PsyI GACNNNGTC 1 cut(s) 556
RsaI GTAC 4 cut(s) 30, 56, 185, 652
RsaNI GTAC 4 cut(s) 29, 55, 184, 651
SapI GCTCTTC 2 cut(s) 161, 218
SaqAI TTAA 2 cut(s) 188, 694
SatI GCNGC 2 cut(s) 405, 563
Sau3AI GATC 4 cut(s) 135, 454, 625, 680
Sau96I GGNCC 2 cut(s) 149, 466
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 207
SinI GGWCC 1 cut(s) 149
Sse9I AATT 1 cut(s) 574
SsiI CCGC 3 cut(s) 147, 404, 563
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 3 cut(s) 21, 325, 450
TaaI ACNGT 3 cut(s) 271, 363, 664
TaiI ACGT 6 cut(s) 34, 111, 163, 248, 260, 438
TaqI TCGA 1 cut(s) 266
TasI AATT 1 cut(s) 574
TatI WGTACW 2 cut(s) 183, 650
TauI GCSGC 2 cut(s) 407, 565
TfiI GAWTC 2 cut(s) 263, 515
Tru1I TTAA 2 cut(s) 188, 694
Tru9I TTAA 2 cut(s) 188, 694
TspDTI ATGAA 1 cut(s) 236
TspGWI ACGGA 2 cut(s) 73, 525
Tth111I GACNNNGTC 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 1 cut(s) 574
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.