Rroxscaffold_2G00082280

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001705
Physical Location & Seq
Forward (+)
5158555 .. 5160150
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082280.1

Sequence Viewer

Length: 966 bp
ATGGAGTTTTTCAAAAGAGCTAGAGTGGTACGATTGCGAAGCCACCATGAAAAATATCTATTAGCAGAGGATGATCAAGAGACTGTGTGCCAAGATCGTGATGGAACGGCGAGGAATGCTACATGGACAGTGGAGATTGTCCAAAGTGGAACAGCTTTACGTTTGAAAAGCTGTTATGGAAAATACTTAACAGCTTCTAACATGCCATTCCGTCTAGGATTGAGAGGCAAGAAAGTCCTACAAACCCTGCCAAAGAGACTCGATTCTTCTTTGGAATGGGAGCCTGTAAGGGAGGGATACCGGATTAAGCTCAAGACACCCTATGGTCAATTCTTGCGTGCAAATGGCGGTGTACCACCTTGGAGAAACTCCATCACCCATGATGTCCCTCATAGATCTGCAAGACAGGATTGGGTTTTGTGGGATATAGATGTTGTGGAGCTTAAACGTGATTCTCCAGAACATCCATCAATGGCTGCGGCACAGCCCACTCCTGCAAGGGCACAATCACCTCCTGCAAAGCCACAGTCCCCTCCTGCAGCGCCACAATCCCCTCCTGCAGTGGCACAACCCCCTACTTCTCCATCACCTGAATTACCTATAGAGATTTCAGAATCGAGCTCTCCGACTAAGATTGAGCTTAGGTCTCCCCAACTTCTACAAAAAGAGTCAAGGAAGTCAATTGATCATGGTTCGCCAAGGAACAATGGAAGAATGATCTTCTATCATGTAGCAGATGACAAAGGAGAAGCCCATGACGATGGAACAGAAAGTGTTTCCTTTTCATTCAAAGGTAGTGAGGTAGAGGCGTTGAAGAAAAGGTTGAAGGAAGAGACAGGGCTCGAGGAATTTGAAGTATGTTCACGCAATCCACTGAATGGCCAACTTTACCCACTTCGCTTACATCTTCCTCCAAACAACCATGATATGCATGTTGTGGTGGTTCCCTCCTTGACCGAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF569

Protein Analysis

321

Amino Acids

36.08

Weight (kDa)

8.65

Isoelectric Point (pI)

72.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF569 PF04601 1 - 141 1e-67 Beta-trefoil domain of unknown function (DUF569)
Ubiq_DUF_assoc PF22932 237 - 315 6.9e-10 DUF569 associated ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 878
AciI CCGC 2 cut(s) 348, 479
AcoI YGGCCR 1 cut(s) 880
AcsI RAATTY 1 cut(s) 848
AfaI GTAC 2 cut(s) 30, 354
AfiI CCNNNNNNNGG 1 cut(s) 878
AgsI TTSAA 6 cut(s) 13, 166, 790, 814, 826, 854
AluBI AGCT 8 cut(s) 20, 155, 171, 194, 310, 442, 621, 640
AluI AGCT 8 cut(s) 20, 155, 171, 194, 310, 442, 621, 640
Alw21I GWGCWC 1 cut(s) 623
Alw26I GTCTC 4 cut(s) 74, 250, 651, 827
Ama87I CYCGRG 1 cut(s) 842
AoxI GGCC 1 cut(s) 880
ApeKI GCWGC 2 cut(s) 476, 539
ApoI RAATTY 1 cut(s) 848
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AspLEI GCGC 1 cut(s) 544
AsuHPI GGTGA 3 cut(s) 367, 501, 579
AvaI CYCGRG 1 cut(s) 842
BaeGI GKGCMC 1 cut(s) 505
BalI TGGCCA 1 cut(s) 882
BanII GRGCYC 2 cut(s) 623, 843
Bbv12I GWGCWC 1 cut(s) 623
BbvI GCAGC 2 cut(s) 463, 551
BccI CCATC 5 cut(s) 95, 380, 475, 592, 755
BceAI ACGGC 1 cut(s) 123
BciVI GTATCC 1 cut(s) 290
BclI TGATCA 2 cut(s) 73, 685
BcoDI GTCTC 4 cut(s) 74, 250, 651, 827
BfaI CTAG 2 cut(s) 21, 215
BfmI CTRYAG 3 cut(s) 537, 558, 600
BfoI RGCGCY 1 cut(s) 545
BfuI GTATCC 1 cut(s) 290
BglII AGATCT 1 cut(s) 395
BisI GCNGC 3 cut(s) 477, 480, 540
BlsI GCNGC 3 cut(s) 478, 481, 541
BmeT110I CYCGRG 1 cut(s) 842
BmiI GGNNCC 2 cut(s) 282, 945
BpmI CTGGAG 1 cut(s) 441
Bpu10I CCTNAGC 1 cut(s) 641
BpuEI CTTGAG 1 cut(s) 296
BsaI GGTCTC 1 cut(s) 651
BsaJI CCNNGG 2 cut(s) 359, 698
BsaWI WCCGGW 1 cut(s) 300
Bsc4I CCNNNNNNNGG 1 cut(s) 878
BseDI CCNNGG 2 cut(s) 359, 698
BseGI GGATG 2 cut(s) 76, 463
BseLI CCNNNNNNNGG 1 cut(s) 878
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 2 cut(s) 463, 551
BshFI GGCC 1 cut(s) 882
BsiHKAI GWGCWC 1 cut(s) 623
BsiHKCI CYCGRG 1 cut(s) 842
BsiSI CCGG 1 cut(s) 301
BslFI GGGAC 2 cut(s) 371, 514
BslI CCNNNNNNNGG 1 cut(s) 878
BsmAI GTCTC 4 cut(s) 74, 250, 651, 827
BsmFI GGGAC 2 cut(s) 371, 514
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 1 cut(s) 882
Bso31I GGTCTC 1 cut(s) 651
BsoBI CYCGRG 1 cut(s) 842
Bsp1286I GDGCHC 3 cut(s) 505, 623, 843
Bsp143I GATC 5 cut(s) 73, 94, 395, 685, 717
BspACI CCGC 2 cut(s) 348, 479
BspANI GGCC 1 cut(s) 882
BspLI GGNNCC 2 cut(s) 282, 945
BspMAI CTGCAG 2 cut(s) 541, 562
BspTNI GGTCTC 1 cut(s) 651
BssECI CCNNGG 2 cut(s) 359, 698
BssMI GATC 5 cut(s) 73, 94, 395, 685, 717
BssT1I CCWWGG 2 cut(s) 359, 698
Bst4CI ACNGT 3 cut(s) 85, 130, 528
Bst6I CTCTTC 1 cut(s) 825
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 2 cut(s) 630, 641
BstF5I GGATG 2 cut(s) 76, 463
BstH2I RGCGCY 1 cut(s) 545
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 5 cut(s) 76, 97, 398, 688, 720
BstMAI GTCTC 4 cut(s) 74, 250, 651, 827
BstMBI GATC 5 cut(s) 73, 94, 395, 685, 717
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNSI RCATGY 2 cut(s) 205, 935
BstSFI CTRYAG 3 cut(s) 537, 558, 600
BstSLI GKGCMC 1 cut(s) 505
BstV1I GCAGC 2 cut(s) 463, 551
BstX2I RGATCY 1 cut(s) 395
BstXI CCANNNNNNTGG 1 cut(s) 761
BstYI RGATCY 1 cut(s) 395
BsuI GTATCC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 882
BtsCI GGATG 2 cut(s) 76, 463
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 3 cut(s) 135, 567, 872
Cac8I GCNNGC 1 cut(s) 339
CfoI GCGC 1 cut(s) 544
Csp6I GTAC 2 cut(s) 29, 353
CviAII CATG 9 cut(s) 47, 123, 202, 380, 689, 728, 755, 923, 932
CviQI GTAC 2 cut(s) 29, 353
DdeI CTNAG 2 cut(s) 630, 641
DpnI GATC 5 cut(s) 75, 96, 397, 687, 719
DpnII GATC 5 cut(s) 73, 94, 395, 685, 717
EaeI YGGCCR 1 cut(s) 880
Eam1104I CTCTTC 1 cut(s) 825
EarI CTCTTC 1 cut(s) 825
Ecl136II GAGCTC 1 cut(s) 621
Eco130I CCWWGG 2 cut(s) 359, 698
Eco24I GRGCYC 2 cut(s) 623, 843
Eco31I GGTCTC 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 621
Eco88I CYCGRG 1 cut(s) 842
EcoICRI GAGCTC 1 cut(s) 621
EcoT14I CCWWGG 2 cut(s) 359, 698
EcoT22I ATGCAT 1 cut(s) 933
EcoT38I GRGCYC 2 cut(s) 623, 843
ErhI CCWWGG 2 cut(s) 359, 698
FaeI CATG 9 cut(s) 50, 126, 205, 383, 692, 731, 758, 926, 935
FaqI GGGAC 2 cut(s) 371, 514
FatI CATG 9 cut(s) 46, 122, 201, 379, 688, 727, 754, 922, 931
FbaI TGATCA 2 cut(s) 73, 685
Fnu4HI GCNGC 3 cut(s) 477, 480, 540
FokI GGATG 2 cut(s) 83, 450
FriOI GRGCYC 2 cut(s) 623, 843
Fsp4HI GCNGC 3 cut(s) 477, 480, 540
FspBI CTAG 2 cut(s) 21, 215
GlaI GCGC 1 cut(s) 543
GluI GCNGC 3 cut(s) 477, 480, 540
GsuI CTGGAG 1 cut(s) 441
HaeII RGCGCY 1 cut(s) 545
HaeIII GGCC 1 cut(s) 882
HapII CCGG 1 cut(s) 301
HhaI GCGC 1 cut(s) 544
Hin1II CATG 9 cut(s) 50, 126, 205, 383, 692, 731, 758, 926, 935
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HinfI GANTC 5 cut(s) 258, 263, 452, 614, 668
HpaII CCGG 1 cut(s) 301
HphI GGTGA 3 cut(s) 367, 501, 579
Hpy166II GTNNAC 2 cut(s) 353, 863
Hpy188I TCNGA 2 cut(s) 613, 627
Hpy188III TCNNGA 4 cut(s) 77, 98, 313, 458
Hpy8I GTNNAC 2 cut(s) 353, 863
HpyAV CCTTC 2 cut(s) 820, 953
HpyCH4III ACNGT 3 cut(s) 85, 130, 528
HpyCH4IV ACGT 2 cut(s) 160, 448
HpyCH4V TGCA 7 cut(s) 341, 401, 497, 518, 539, 560, 931
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 2 cut(s) 630, 641
HpySE526I ACGT 2 cut(s) 160, 448
Hsp92II CATG 9 cut(s) 50, 126, 205, 383, 692, 731, 758, 926, 935
HspAI GCGC 1 cut(s) 542
Ksp22I TGATCA 2 cut(s) 73, 685
Kzo9I GATC 5 cut(s) 73, 94, 395, 685, 717
LmnI GCTCC 2 cut(s) 280, 439
Lsp1109I GCAGC 2 cut(s) 463, 551
MaeI CTAG 2 cut(s) 21, 215
MaeII ACGT 2 cut(s) 160, 448
MalI GATC 5 cut(s) 75, 96, 397, 687, 719
MboI GATC 5 cut(s) 73, 94, 395, 685, 717
MboII GAAGA 6 cut(s) 258, 712, 723, 826, 842, 899
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 3 cut(s) 505, 623, 843
MlsI TGGCCA 1 cut(s) 882
MluCI AATT 4 cut(s) 329, 593, 681, 848
MluNI TGGCCA 1 cut(s) 882
MlyI GAGTC 2 cut(s) 252, 677
MmeI TCCRAC 1 cut(s) 650
Mox20I TGGCCA 1 cut(s) 882
Mph1103I ATGCAT 1 cut(s) 933
MscI TGGCCA 1 cut(s) 882
MseI TTAA 3 cut(s) 188, 306, 444
MslI CAYNNNNRTG 1 cut(s) 759
Msp20I TGGCCA 1 cut(s) 882
MspI CCGG 1 cut(s) 301
MunI CAATTG 1 cut(s) 681
Mva1269I GAATGC 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 5 cut(s) 73, 94, 395, 685, 717
NlaIII CATG 9 cut(s) 50, 126, 205, 383, 692, 731, 758, 926, 935
NlaIV GGNNCC 2 cut(s) 282, 945
NsiI ATGCAT 1 cut(s) 933
NspI RCATGY 2 cut(s) 205, 935
PaeR7I CTCGAG 1 cut(s) 842
PcsI WCGNNNNNNNCGW 1 cut(s) 623
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 3 cut(s) 263, 452, 614
PflMI CCANNNNNTGG 1 cut(s) 878
PkrI GCNGC 3 cut(s) 478, 481, 541
PleI GAGTC 2 cut(s) 252, 676
PpsI GAGTC 2 cut(s) 252, 676
Psp124BI GAGCTC 1 cut(s) 623
PspN4I GGNNCC 2 cut(s) 282, 945
PspXI VCTCGAGB 1 cut(s) 842
PstI CTGCAG 2 cut(s) 541, 562
PsuI RGATCY 1 cut(s) 395
RsaI GTAC 2 cut(s) 30, 354
RsaNI GTAC 2 cut(s) 29, 353
RseI CAYNNNNRTG 1 cut(s) 759
SacI GAGCTC 1 cut(s) 623
SaqAI TTAA 3 cut(s) 188, 306, 444
SatI GCNGC 3 cut(s) 477, 480, 540
Sau3AI GATC 5 cut(s) 73, 94, 395, 685, 717
SchI GAGTC 2 cut(s) 252, 677
SduI GDGCHC 3 cut(s) 505, 623, 843
SfcI CTRYAG 3 cut(s) 537, 558, 600
Sfr274I CTCGAG 1 cut(s) 842
SlaI CTCGAG 1 cut(s) 842
SmiMI CAYNNNNRTG 1 cut(s) 759
SmlI CTYRAG 2 cut(s) 311, 842
SmoI CTYRAG 2 cut(s) 311, 842
Sse9I AATT 4 cut(s) 329, 593, 681, 848
SsiI CCGC 2 cut(s) 348, 479
SspMI CTAG 2 cut(s) 21, 215
SstI GAGCTC 1 cut(s) 623
StyI CCWWGG 2 cut(s) 359, 698
TaaI ACNGT 3 cut(s) 85, 130, 528
TaiI ACGT 2 cut(s) 163, 451
TaqI TCGA 3 cut(s) 261, 617, 843
TasI AATT 4 cut(s) 329, 593, 681, 848
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 3 cut(s) 263, 452, 614
Tru1I TTAA 3 cut(s) 188, 306, 444
Tru9I TTAA 3 cut(s) 188, 306, 444
TscAI CASTG 3 cut(s) 135, 567, 879
TseI GCWGC 2 cut(s) 476, 539
TspDTI ATGAA 2 cut(s) 63, 774
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 3 cut(s) 135, 567, 879
Van91I CCANNNNNTGG 1 cut(s) 878
XapI RAATTY 1 cut(s) 848
XceI RCATGY 2 cut(s) 205, 935
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XhoI CTCGAG 1 cut(s) 842
XspI CTAG 2 cut(s) 21, 215
Zsp2I ATGCAT 1 cut(s) 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.