Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001705

Physical Location & Seq

Genomic Coordinates Reverse (-)

102679 .. 104495

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01311.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGAGATATTTAGAAAGGCAACGATTGTACGTCTCCGTAGCCACAACGACAAATACCTAAGTGCCGATGAAGATCAAGAATCCGTTCATCAAGATCGTCGCGGCACAACAAAAAACACTAGATGGACGGTTGAGATCGTACCTGGATCCAATGTGATCCGTCTTCAAAGCTGTTACGGCAAATACCTTACCGCCACTAATATTCATTTCCTCCTTGGAGCCACCGGCGAAAAGGTACTTCAAACTCTACCCGAAAAGTTGGATTCATCTGCGGAGTGGGAGCCGCTATCAGACGATGGTGTACACGTACGGTTCAAGAGTCGCTACGGACAATATCTGAGGGCAAACAAAGGTGTACCACCGTGGAGAAACTCTATCACACACGATATTCCTAGTCGTACGGTCACACAAGATTGGGTCATGTGGACTGTTGACGTTCTTCAGATTCGAGTTATCAAAGATGATGCAGAGTCTACCCACAGTTCTTCCACTTTTTCACGGATTGAGTCAGATGATTCGTTTATTGTGAGTTTACCACTCAAGTCCGAAGGAAGGCTAATATATTACGAGACCGGAGATGATAGTGGGAACATAAATAAGGAAATAGGAGAAAAATCATTGATATTCCATGGAAGCGAGTTGATAGAACTAAAGAAGAAGCTTGAGGAAGAAACAGAGATGGAAGATGTTATGATTTGGTGTAGAAATCCTTTGAACGAAAAGCTTTGTCCTCTTCAATTGCATCTTCCTCCTAACAACGCAACTATGCACATCATCGTCTTTCCTTCTTCTTGCGGTACTAAACTTACCTCCTTCTTCATTGTTACCATTATCTATAATCAAAATATTGTTTATGCATTCCTAATTTTTTTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF569

Protein Analysis

292

Amino Acids

33.54

Weight (kDa)

5.88

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF569	PF04601	1 - 142	2.6e-64	Beta-trefoil domain of unknown function (DUF569)
Ubiq_DUF_assoc	PF22932	184 - 261	5.5e-07	DUF569 associated ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01311 AT3G01311 AT3G28630 AT3G28630
fragaria_vesca	FvH4_6g49410 FvH4_6g49420
malus_domestica	MD09G1045600.v1.1 MD17G1046300.v1.1
prunus_persica	Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273100_v2.0.a1
pyrus_communis	pycom111g03500
rosa_chinensis	RchiOBHm_Chr2g0169291 RchiOBHm_Chr2g0169301 RchiOBHm_Chr2g0169311
rosa_laevigata	RLG00000021852 RLG00000021853 RLG00000021854
rosa_multiflora	Rmu_co8313715.1_g000001 Rmu_ssc0000399.1_g000006 Rmu_ssc0000399.1_g000007 Rmu_ssc0000399.1_g000010
rosa_roxburghii	Rroxscaffold_2G00082250 Rroxscaffold_2G00082270 Rroxscaffold_2G00082280
rosa_rugosa	Rorug02G0538600 Rorug02G0538700 Rorug02G0538800 Rorug02G0538900 Rorug02G0539000 Rorug02G0539100 Rorug02G0539300 Rorug02G0539300
rosa_samantha	Rh2AG610400 Rh2AG610500 Rh2AG610600 Rh2BG623300 Rh2BG623600 Rh2BG623800 Rh2CG591700 Rh2CG592000 Rh2CG592100 Rh2DG634300 Rh2DG634600 Rh2DG634700
rosa_wichuraiana	Rw2G050620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	473
AccII	CGCG	1 cut(s)	102
AciI	CCGC	5 cut(s)	102, 192, 272, 284, 795
AclWI	GGATC	3 cut(s)	141, 151, 154
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	8 cut(s)	30, 141, 237, 303, 309, 357, 400, 799
AfiI	CCNNNNNNNGG	1 cut(s)	552
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	6 cut(s)	167, 242, 316, 715, 737, 874
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	3 cut(s)	171, 661, 724
AluI	AGCT	3 cut(s)	171, 661, 724
Alw26I	GTCTC	2 cut(s)	38, 563
AlwI	GGATC	3 cut(s)	141, 151, 154
Asp700I	GAANNNNTTC	1 cut(s)	84
BamHI	GGATCC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	155
BccI	CCATC	3 cut(s)	117, 290, 673
BceAI	ACGGC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	38, 563
BfaI	CTAG	2 cut(s)	120, 393
BisI	GCNGC	2 cut(s)	103, 284
BlsI	GCNGC	2 cut(s)	104, 285
Bme1390I	CCNGG	1 cut(s)	144
BmiI	GGNNCC	3 cut(s)	148, 220, 282
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	2 cut(s)	454, 751
BpiI	GAAGAC	1 cut(s)	155
BpuEI	CTTGAG	2 cut(s)	524, 683
BsaAI	YACGTR	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	3 cut(s)	214, 362, 628
BsaWI	WCCGGW	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	1 cut(s)	552
Bse118I	RCCGGY	1 cut(s)	224
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	3 cut(s)	214, 362, 628
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	552
BseMII	CTCAG	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	225, 573
BsiWI	CGTACG	2 cut(s)	307, 398
BslI	CCNNNNNNNGG	1 cut(s)	552
BsmAI	GTCTC	2 cut(s)	38, 563
BsmBI	CGTCTC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	857
Bso31I	GGTCTC	1 cut(s)	563
Bsp1407I	TGTACA	1 cut(s)	301
Bsp143I	GATC	5 cut(s)	73, 94, 135, 146, 156
Bsp19I	CCATGG	1 cut(s)	628
BspACI	CCGC	5 cut(s)	102, 192, 272, 284, 795
BspCNI	CTCAG	1 cut(s)	330
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	148, 220, 282
BspPI	GGATC	3 cut(s)	141, 151, 154
BspTNI	GGTCTC	1 cut(s)	563
BsrFI	RCCGGY	1 cut(s)	224
BsrGI	TGTACA	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	3 cut(s)	214, 362, 628
BssMI	GATC	5 cut(s)	73, 94, 135, 146, 156
BssT1I	CCWWGG	2 cut(s)	214, 628
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	6 cut(s)	130, 312, 363, 403, 430, 482
Bst6I	CTCTTC	1 cut(s)	738
BstAUI	TGTACA	1 cut(s)	301
BstBAI	YACGTR	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	59, 338
BstDSI	CCRYGG	2 cut(s)	362, 628
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	5 cut(s)	76, 97, 138, 149, 159
BstMAI	GTCTC	2 cut(s)	38, 563
BstMBI	GATC	5 cut(s)	73, 94, 135, 146, 156
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BtgI	CCRYGG	2 cut(s)	362, 628
Cfr10I	RCCGGY	1 cut(s)	224
Csp6I	GTAC	8 cut(s)	29, 140, 236, 302, 308, 356, 399, 798
CviAII	CATG	2 cut(s)	421, 629
CviJI	RGCY	7 cut(s)	42, 171, 221, 283, 556, 661, 724
CviKI_1	RGCY	7 cut(s)	42, 171, 221, 283, 556, 661, 724
CviQI	GTAC	8 cut(s)	29, 140, 236, 302, 308, 356, 399, 798
DdeI	CTNAG	2 cut(s)	59, 338
DpnI	GATC	5 cut(s)	75, 96, 137, 148, 158
DpnII	GATC	5 cut(s)	73, 94, 135, 146, 156
Eam1104I	CTCTTC	1 cut(s)	738
EarI	CTCTTC	1 cut(s)	738
Eco130I	CCWWGG	2 cut(s)	214, 628
Eco31I	GGTCTC	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	2 cut(s)	214, 628
EcoT22I	ATGCAT	1 cut(s)	859
ErhI	CCWWGG	2 cut(s)	214, 628
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	2 cut(s)	424, 632
FaiI	YATR	8 cut(s)	422, 562, 593, 630, 692, 767, 837, 855
FatI	CATG	2 cut(s)	420, 628
FblI	GTMKAC	1 cut(s)	473
Fnu4HI	GCNGC	2 cut(s)	103, 284
Fsp4HI	GCNGC	2 cut(s)	103, 284
FspBI	CTAG	2 cut(s)	120, 393
GluI	GCNGC	2 cut(s)	103, 284
HapII	CCGG	2 cut(s)	225, 573
Hin1II	CATG	2 cut(s)	424, 632
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	2 cut(s)	659, 722
HinfI	GANTC	7 cut(s)	80, 263, 319, 445, 470, 506, 515
HpaII	CCGG	2 cut(s)	225, 573
Hpy166II	GTNNAC	7 cut(s)	302, 304, 356, 426, 433, 474, 533
Hpy188I	TCNGA	5 cut(s)	292, 339, 444, 511, 547
Hpy188III	TCNNGA	3 cut(s)	77, 92, 316
Hpy8I	GTNNAC	7 cut(s)	302, 304, 356, 426, 433, 474, 533
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	4 cut(s)	542, 546, 795, 823
HpyCH4III	ACNGT	6 cut(s)	130, 312, 363, 403, 430, 482
HpyCH4IV	ACGT	3 cut(s)	31, 306, 435
HpyCH4V	TGCA	4 cut(s)	467, 742, 769, 857
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	2 cut(s)	59, 338
HpySE526I	ACGT	3 cut(s)	31, 306, 435
Hsp92II	CATG	2 cut(s)	424, 632
Kzo9I	GATC	5 cut(s)	73, 94, 135, 146, 156
LmnI	GCTCC	2 cut(s)	218, 280
LpnPI	CCDG	4 cut(s)	129, 156, 238, 586
LweI	GCATC	2 cut(s)	454, 751
MaeI	CTAG	2 cut(s)	120, 393
MaeII	ACGT	3 cut(s)	31, 306, 435
MaeIII	GTNAC	3 cut(s)	173, 403, 823
MalI	GATC	5 cut(s)	75, 96, 137, 148, 158
MboI	GATC	5 cut(s)	73, 94, 135, 146, 156
MfeI	CAATTG	2 cut(s)	737, 874
MflI	RGATCY	1 cut(s)	146
MluCI	AATT	3 cut(s)	737, 864, 874
MlyI	GAGTC	3 cut(s)	328, 479, 515
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	221, 333, 658, 741, 759, 820
Mph1103I	ATGCAT	1 cut(s)	859
MroXI	GAANNNNTTC	1 cut(s)	84
MspI	CCGG	2 cut(s)	225, 573
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	2 cut(s)	737, 874
Mva1269I	GAATGC	1 cut(s)	857
MvaI	CCWGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	177
NcoI	CCATGG	1 cut(s)	628
NdeII	GATC	5 cut(s)	73, 94, 135, 146, 156
NlaIII	CATG	2 cut(s)	424, 632
NlaIV	GGNNCC	3 cut(s)	148, 220, 282
NmuCI	GTSAC	1 cut(s)	403
NsiI	ATGCAT	1 cut(s)	859
PctI	GAATGC	1 cut(s)	857
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	4 cut(s)	80, 263, 445, 515
Pfl23II	CGTACG	2 cut(s)	307, 398
PkrI	GCNGC	2 cut(s)	104, 285
PleI	GAGTC	3 cut(s)	327, 478, 514
PpsI	GAGTC	3 cut(s)	327, 478, 514
Ppu21I	YACGTR	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspLI	CGTACG	2 cut(s)	307, 398
PspN4I	GGNNCC	3 cut(s)	148, 220, 282
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	8 cut(s)	30, 141, 237, 303, 309, 357, 400, 799
RsaNI	GTAC	8 cut(s)	29, 140, 236, 302, 308, 356, 399, 798
SatI	GCNGC	2 cut(s)	103, 284
Sau3AI	GATC	5 cut(s)	73, 94, 135, 146, 156
SchI	GAGTC	3 cut(s)	328, 479, 515
ScrFI	CCNGG	1 cut(s)	144
SfaNI	GCATC	2 cut(s)	454, 751
SgrAI	CRCCGGYG	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	539, 662
SmoI	CTYRAG	2 cut(s)	539, 662
Sse9I	AATT	3 cut(s)	737, 864, 874
SsiI	CCGC	5 cut(s)	102, 192, 272, 284, 795
SspI	AATATT	2 cut(s)	202, 847
SspMI	CTAG	2 cut(s)	120, 393
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	2 cut(s)	214, 628
TaaI	ACNGT	6 cut(s)	130, 312, 363, 403, 430, 482
TaiI	ACGT	3 cut(s)	34, 309, 438
TaqI	TCGA	1 cut(s)	448
TasI	AATT	3 cut(s)	737, 864, 874
TatI	WGTACW	1 cut(s)	301
TauI	GCSGC	2 cut(s)	105, 286
TfiI	GAWTC	4 cut(s)	80, 263, 445, 515
TseFI	GTSAC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	5 cut(s)	77, 84, 194, 255, 808
TspGWI	ACGGA	5 cut(s)	26, 73, 149, 342, 514
XmiI	GTMKAC	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	2 cut(s)	120, 393
Zsp2I	ATGCAT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.