FvH4_6g49420

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001705
Physical Location & Seq
Reverse (-)
37025505 .. 37028298
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49420.t1

Sequence Viewer

Length: 1257 bp
ATGGAGTTTTTCAAAAAAGCAAAGGCGGTACGTTTCCGGAGCCACCACGACAAGTACTTATTAGCCGGCGACGATGGAGAGTCTATTTGGCAAGACCGTGATGGATACGTGAGGAACGCAAGATGGGTGGTGGAGATGAACGAGAGCGGAACAGCCATACGTCTAAAGAGCTGTTATGGAAAGTACTTAACGGCGTCAAACATGCCTGGACTTCTGGGAATGAAGAGCAAGAAGGTGGTGCAGACATTGCCGAAGACGTTGGATTCGACGGTTGAGTGGGAGCCTATCAGAGAAGAAGGGTTCAAGGTGAAGCTGAAGATGGCGGGTAGTCATGACGAGTTTTTGAGAGCCAATGGAGGTGTGCCACCATGGCGCAACTCCATCACGCATGATACTGCTCATCGGAAGCTGGCCAAGGAATGGGTGTTGTGGGATTTGGACGTGGTGGAGATTGTTAGGGCAAAGAAAACGATGCCGGATGGCGGTGACTTGGAGCAATGGGAATCTTGTTCGTCCTCATCGGAGAATGATGACATGATATCTTTGCCGACGAAACAAAATTCAGACAGCAAAAACAGCGAAAGCCCGTCAGACATGGAGGTATTCAAGAAAGCCAAAGTGGTACGGTTTCGAAGCCACCATGATAAATATCTAATTGCAGACGAAGATGGAGAGACTGTAACACAAGACAGGGACGGAACATCCACAAATGCTAGATGGACAGTGGAGTTTGTCAACCATGCAGAAACTGTACGTTTCAAAAGTTGTTACGGGAAATACCTAACGGCGTCAAACCAGCCATTCAGACCAGGGAGAGGCTACAAAGTCTTGCAAACGCAGCCAAGGTTGAGACTGGATTCCTCTATGGAATGGGAGCCTGTTAGGGAGGGATTACAGGTCCGGCTTGTGACGCCCTACGGCCAATTCTTGTGCGCAAATGGGGGAGTTCCACCTTGGAGAAATTCGATCACGCATGACGCTCCGGGAAAAATTGTCAGGCAGGATTGGATTCTGTGGGATGTAGATGTGTTAAAGAAGCGTTCAGATGATTTTACAACAACAGATGATGATGATGAAGAATCTTCACAATTAGATGAACCCAAATCTCAAAGGGAGGACATTATAATGCCTATAGGATCAAAAAGGGATAGATTTCGCGAAGAAGTGAGAGCAAATGTTATTCGTTTTTCTGATAAAATGAAGAAAGTCGGACTAAAGGTGAGCCTCAGCCAGAAGTGGCGGTCGACAGATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF569

Protein Analysis

419

Amino Acids

48.1

Weight (kDa)

8.15

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF569 PF04601 1 - 144 2.2e-59 Beta-trefoil domain of unknown function (DUF569)
DUF569 PF04601 199 - 339 6.8e-59 Beta-trefoil domain of unknown function (DUF569)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1124
Acc16I TGCGCA 1 cut(s) 934
AccB7I CCANNNNNTGG 1 cut(s) 420
AccBSI CCGCTC 1 cut(s) 147
AccI GTMKAC 1 cut(s) 1244
AccII CGCG 1 cut(s) 1158
AccIII TCCGGA 1 cut(s) 36
AciI CCGC 5 cut(s) 26, 147, 323, 483, 1240
AclWI GGATC 1 cut(s) 1144
AcoI YGGCCR 2 cut(s) 411, 919
AcsI RAATTY 2 cut(s) 559, 961
AcuI CTGAAG 1 cut(s) 335
AcyI GRCGYC 3 cut(s) 194, 788, 911
AfaI GTAC 5 cut(s) 30, 56, 185, 624, 753
AfiI CCNNNNNNNGG 3 cut(s) 420, 482, 815
AgsI TTSAA 4 cut(s) 13, 304, 607, 760
AjiI CACGTC 1 cut(s) 442
AjnI CCWGG 2 cut(s) 205, 808
AluBI AGCT 3 cut(s) 171, 313, 409
AluI AGCT 3 cut(s) 171, 313, 409
Alw26I GTCTC 2 cut(s) 668, 844
AlwI GGATC 1 cut(s) 1144
AlwNI CAGNNNCTG 1 cut(s) 749
Aor13HI TCCGGA 1 cut(s) 36
AoxI GGCC 2 cut(s) 411, 919
ApeKI GCWGC 1 cut(s) 838
ApoI RAATTY 2 cut(s) 559, 961
ArsI GACNNNNNNTTYG 2 cut(s) 247, 279
AspLEI GCGC 2 cut(s) 375, 935
AspS9I GGNCC 1 cut(s) 898
AsuC2I CCSGG 1 cut(s) 984
AsuHPI GGTGA 3 cut(s) 319, 497, 1231
AsuII TTCGAA 1 cut(s) 631
AvaII GGWCC 1 cut(s) 898
BalI TGGCCA 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 260
BbvCI CCTCAGC 1 cut(s) 1226
BbvI GCAGC 1 cut(s) 850
BccI CCATC 8 cut(s) 68, 95, 117, 313, 389, 473, 662, 711
BceAI ACGGC 3 cut(s) 207, 801, 934
BciT130I CCWGG 2 cut(s) 207, 810
BciVI GTATCC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 984
BcoDI GTCTC 2 cut(s) 668, 844
BfaI CTAG 1 cut(s) 714
BfmI CTRYAG 1 cut(s) 1131
BfuI GTATCC 1 cut(s) 98
BglI GCCNNNNNGGC 1 cut(s) 370
BisI GCNGC 1 cut(s) 839
BlsI GCNGC 1 cut(s) 840
BmcAI AGTACT 2 cut(s) 56, 185
Bme1390I CCNGG 3 cut(s) 207, 810, 984
Bme18I GGWCC 1 cut(s) 898
BmgBI CACGTC 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 898
BmiI GGNNCC 3 cut(s) 41, 282, 876
BmrFI CCNGG 3 cut(s) 207, 810, 984
BmsI GCATC 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 1226
Bpu14I TTCGAA 1 cut(s) 631
BpuMI CCSGG 1 cut(s) 984
BsaAI YACGTR 1 cut(s) 109
BsaBI GATNNNNATC 1 cut(s) 648
BsaHI GRCGYC 3 cut(s) 194, 788, 911
BsaJI CCNNGG 5 cut(s) 368, 414, 809, 842, 953
BsaWI WCCGGW 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 663, 693
Bsc4I CCNNNNNNNGG 3 cut(s) 420, 482, 815
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 858
Bse3DI GCAATG 2 cut(s) 245, 503
Bse8I GATNNNNATC 1 cut(s) 648
BseAI TCCGGA 1 cut(s) 36
BseBI CCWGG 2 cut(s) 207, 810
BseDI CCNNGG 5 cut(s) 368, 414, 809, 842, 953
BseGI GGATG 3 cut(s) 484, 701, 1024
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 3 cut(s) 420, 482, 815
BseMI GCAATG 2 cut(s) 245, 503
BseMII CTCAG 1 cut(s) 1240
BseNI ACTGG 1 cut(s) 858
BseXI GCAGC 1 cut(s) 850
BsgI GTGCAG 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 1158
Bsh1285I CGRYCG 1 cut(s) 1244
BshFI GGCC 2 cut(s) 413, 921
BsiEI CGRYCG 1 cut(s) 1244
BsiSI CCGG 5 cut(s) 37, 66, 476, 901, 983
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 3 cut(s) 420, 482, 815
BsmAI GTCTC 2 cut(s) 668, 844
BsmFI GGGAC 1 cut(s) 707
BsnI GGCC 2 cut(s) 413, 921
Bsp119I TTCGAA 1 cut(s) 631
Bsp13I TCCGGA 1 cut(s) 36
Bsp143I GATC 2 cut(s) 966, 1136
Bsp19I CCATGG 1 cut(s) 368
Bsp68I TCGCGA 1 cut(s) 1158
BspACI CCGC 5 cut(s) 26, 147, 323, 483, 1240
BspANI GGCC 2 cut(s) 413, 921
BspCNI CTCAG 1 cut(s) 1239
BspEI TCCGGA 1 cut(s) 36
BspFNI CGCG 1 cut(s) 1158
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 3 cut(s) 41, 282, 876
BspPI GGATC 1 cut(s) 1144
BspQI GCTCTTC 1 cut(s) 218
BspT104I TTCGAA 1 cut(s) 631
BsrBI CCGCTC 1 cut(s) 147
BsrDI GCAATG 2 cut(s) 245, 503
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 858
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 5 cut(s) 368, 414, 809, 842, 953
BssMI GATC 2 cut(s) 966, 1136
BssNI GRCGYC 3 cut(s) 194, 788, 911
BssT1I CCWWGG 4 cut(s) 368, 414, 842, 953
Bst2UI CCWGG 2 cut(s) 207, 810
Bst4CI ACNGT 6 cut(s) 98, 271, 627, 679, 724, 751
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 3 cut(s) 194, 788, 911
BstAPI GCANNNNNTGC 1 cut(s) 247
BstBAI YACGTR 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 631
BstC8I GCNNGC 2 cut(s) 67, 411
BstDEI CTNAG 1 cut(s) 1226
BstDSI CCRYGG 1 cut(s) 368
BstF5I GGATG 3 cut(s) 484, 701, 1024
BstFNI CGCG 1 cut(s) 1158
BstHHI GCGC 2 cut(s) 375, 935
BstKTI GATC 2 cut(s) 969, 1139
BstMAI GTCTC 2 cut(s) 668, 844
BstMBI GATC 2 cut(s) 966, 1136
BstMCI CGRYCG 1 cut(s) 1244
BstMWI GCNNNNNNNGC 5 cut(s) 247, 370, 576, 838, 910
BstNI CCWGG 2 cut(s) 207, 810
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 3 cut(s) 205, 808, 982
BstSFI CTRYAG 1 cut(s) 1131
BstUI CGCG 1 cut(s) 1158
BstV1I GCAGC 1 cut(s) 850
BstV2I GAAGAC 1 cut(s) 260
BsuI GTATCC 1 cut(s) 98
BsuRI GGCC 2 cut(s) 413, 921
BtgI CCRYGG 1 cut(s) 368
BtrI CACGTC 1 cut(s) 442
BtsCI GGATG 3 cut(s) 484, 701, 1024
BtsIMutI CAGTG 1 cut(s) 729
BtuMI TCGCGA 1 cut(s) 1158
Cac8I GCNNGC 2 cut(s) 67, 411
CaiI CAGNNNCTG 1 cut(s) 749
CciI TCATGA 1 cut(s) 331
CfoI GCGC 2 cut(s) 375, 935
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 898
CseI GACGC 4 cut(s) 183, 777, 919, 986
Csp6I GTAC 5 cut(s) 29, 55, 184, 623, 752
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviAII CATG 9 cut(s) 202, 332, 369, 389, 535, 595, 641, 740, 974
CviQI GTAC 5 cut(s) 29, 55, 184, 623, 752
DdeI CTNAG 1 cut(s) 1226
DpnI GATC 2 cut(s) 968, 1138
DpnII GATC 2 cut(s) 966, 1136
EaeI YGGCCR 2 cut(s) 411, 919
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco130I CCWWGG 4 cut(s) 368, 414, 842, 953
Eco32I GATATC 1 cut(s) 540
Eco47I GGWCC 1 cut(s) 898
Eco57I CTGAAG 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 205, 808
EcoRV GATATC 1 cut(s) 540
EcoT14I CCWWGG 4 cut(s) 368, 414, 842, 953
ErhI CCWWGG 4 cut(s) 368, 414, 842, 953
FaeI CATG 9 cut(s) 205, 335, 372, 392, 538, 598, 644, 743, 977
FaqI GGGAC 1 cut(s) 707
FatI CATG 9 cut(s) 201, 331, 368, 388, 534, 594, 640, 739, 973
FauI CCCGC 1 cut(s) 316
FblI GTMKAC 1 cut(s) 1244
Fnu4HI GCNGC 1 cut(s) 839
FokI GGATG 3 cut(s) 491, 688, 1031
Fsp4HI GCNGC 1 cut(s) 839
FspBI CTAG 1 cut(s) 714
FspI TGCGCA 1 cut(s) 934
GlaI GCGC 2 cut(s) 374, 934
GluI GCNGC 1 cut(s) 839
HaeIII GGCC 2 cut(s) 413, 921
HapII CCGG 5 cut(s) 37, 66, 476, 901, 983
HgaI GACGC 4 cut(s) 183, 777, 919, 986
HhaI GCGC 2 cut(s) 375, 935
Hin1I GRCGYC 3 cut(s) 194, 788, 911
Hin1II CATG 9 cut(s) 205, 335, 372, 392, 538, 598, 644, 743, 977
Hin6I GCGC 2 cut(s) 373, 933
HinP1I GCGC 2 cut(s) 373, 933
HincII GTYRAC 2 cut(s) 736, 1245
HindII GTYRAC 2 cut(s) 736, 1245
HinfI GANTC 6 cut(s) 80, 263, 503, 857, 1009, 1079
HpaII CCGG 5 cut(s) 37, 66, 476, 901, 983
HphI GGTGA 3 cut(s) 319, 497, 1231
Hpy166II GTNNAC 2 cut(s) 736, 1245
Hpy188I TCNGA 9 cut(s) 290, 405, 523, 565, 592, 806, 1045, 1192, 1211
Hpy188III TCNNGA 4 cut(s) 37, 332, 607, 1157
Hpy8I GTNNAC 2 cut(s) 736, 1245
Hpy99I CGWCG 3 cut(s) 74, 271, 553
HpyAV CCTTC 2 cut(s) 226, 290
HpyCH4III ACNGT 6 cut(s) 98, 271, 627, 679, 724, 751
HpyCH4IV ACGT 6 cut(s) 31, 108, 160, 257, 441, 754
HpyCH4V TGCA 4 cut(s) 241, 659, 743, 832
HpyF10VI GCNNNNNNNGC 5 cut(s) 247, 370, 576, 838, 910
HpyF3I CTNAG 1 cut(s) 1226
HpySE526I ACGT 6 cut(s) 31, 108, 160, 257, 441, 754
Hsp92I GRCGYC 3 cut(s) 194, 788, 911
Hsp92II CATG 9 cut(s) 205, 335, 372, 392, 538, 598, 644, 743, 977
HspAI GCGC 2 cut(s) 373, 933
Kpn2I TCCGGA 1 cut(s) 36
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 966, 1136
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 5 cut(s) 39, 280, 493, 874, 985
Lsp1109I GCAGC 1 cut(s) 850
LweI GCATC 1 cut(s) 462
MaeI CTAG 1 cut(s) 714
MaeII ACGT 6 cut(s) 31, 108, 160, 257, 441, 754
MaeIII GTNAC 4 cut(s) 485, 679, 767, 907
MalI GATC 2 cut(s) 968, 1138
MbiI CCGCTC 1 cut(s) 147
MboI GATC 2 cut(s) 966, 1136
MboII GAAGA 9 cut(s) 235, 265, 305, 328, 677, 1074, 1088, 1172, 1213
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 6 cut(s) 559, 654, 923, 961, 990, 1088
MluNI TGGCCA 1 cut(s) 413
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 240, 1189
MnlI CCTC 9 cut(s) 105, 350, 526, 592, 809, 871, 880, 1108, 1235
Mox20I TGGCCA 1 cut(s) 413
MroI TCCGGA 1 cut(s) 36
MroNI GCCGGC 1 cut(s) 65
MscI TGGCCA 1 cut(s) 413
MseI TTAA 2 cut(s) 188, 1031
MslI CAYNNNNRTG 1 cut(s) 1124
Msp20I TGGCCA 1 cut(s) 413
MspI CCGG 5 cut(s) 37, 66, 476, 901, 983
MspR9I CCNGG 3 cut(s) 207, 810, 984
MvaI CCWGG 2 cut(s) 207, 810
MvnI CGCG 1 cut(s) 1158
MwoI GCNNNNNNNGC 5 cut(s) 247, 370, 576, 838, 910
NaeI GCCGGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 984
NcoI CCATGG 1 cut(s) 368
NdeII GATC 2 cut(s) 966, 1136
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 9 cut(s) 205, 335, 372, 392, 538, 598, 644, 743, 977
NlaIV GGNNCC 3 cut(s) 41, 282, 876
NmuCI GTSAC 2 cut(s) 485, 907
NruI TCGCGA 1 cut(s) 1158
NsbI TGCGCA 1 cut(s) 934
NspI RCATGY 1 cut(s) 205
NspV TTCGAA 1 cut(s) 631
PagI TCATGA 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 218
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PdiI GCCGGC 1 cut(s) 67
PfeI GAWTC 5 cut(s) 263, 503, 857, 1009, 1079
PflMI CCANNNNNTGG 1 cut(s) 420
PfoI TCCNGGA 1 cut(s) 982
PkrI GCNGC 1 cut(s) 840
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 109
PsiI TTATAA 1 cut(s) 1124
Psp6I CCWGG 2 cut(s) 205, 808
PspGI CCWGG 2 cut(s) 205, 808
PspN4I GGNNCC 3 cut(s) 41, 282, 876
PspPI GGNCC 1 cut(s) 898
PstNI CAGNNNCTG 1 cut(s) 749
RruI TCGCGA 1 cut(s) 1158
RsaI GTAC 5 cut(s) 30, 56, 185, 624, 753
RsaNI GTAC 5 cut(s) 29, 55, 184, 623, 752
RseI CAYNNNNRTG 1 cut(s) 1124
SalI GTCGAC 1 cut(s) 1243
SapI GCTCTTC 1 cut(s) 218
SaqAI TTAA 2 cut(s) 188, 1031
SatI GCNGC 1 cut(s) 839
Sau3AI GATC 2 cut(s) 966, 1136
Sau96I GGNCC 1 cut(s) 898
ScaI AGTACT 2 cut(s) 56, 185
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 3 cut(s) 207, 810, 984
SfaNI GCATC 1 cut(s) 462
SfcI CTRYAG 1 cut(s) 1131
SfuI TTCGAA 1 cut(s) 631
SinI GGWCC 1 cut(s) 898
SmiMI CAYNNNNRTG 1 cut(s) 1124
Sse9I AATT 6 cut(s) 559, 654, 923, 961, 990, 1088
SsiI CCGC 5 cut(s) 26, 147, 323, 483, 1240
SspMI CTAG 1 cut(s) 714
StyD4I CCNGG 3 cut(s) 205, 808, 982
StyI CCWWGG 4 cut(s) 368, 414, 842, 953
TaaI ACNGT 6 cut(s) 98, 271, 627, 679, 724, 751
TaiI ACGT 6 cut(s) 34, 111, 163, 260, 444, 757
TaqI TCGA 4 cut(s) 266, 631, 965, 1244
TasI AATT 6 cut(s) 559, 654, 923, 961, 990, 1088
TatI WGTACW 2 cut(s) 54, 183
TfiI GAWTC 5 cut(s) 263, 503, 857, 1009, 1079
Tru1I TTAA 2 cut(s) 188, 1031
Tru9I TTAA 2 cut(s) 188, 1031
TscAI CASTG 1 cut(s) 729
TseFI GTSAC 2 cut(s) 485, 907
TseI GCWGC 1 cut(s) 838
Tsp45I GTSAC 2 cut(s) 485, 907
TspDTI ATGAA 5 cut(s) 152, 236, 1089, 1110, 1214
TspGWI ACGGA 1 cut(s) 711
TspRI CASTG 1 cut(s) 729
Van91I CCANNNNNTGG 1 cut(s) 420
VpaK11BI GGWCC 1 cut(s) 898
XapI RAATTY 2 cut(s) 559, 961
XceI RCATGY 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 1244
XspI CTAG 1 cut(s) 714
ZrmI AGTACT 2 cut(s) 56, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.