Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001705

Physical Location & Seq

Genomic Coordinates Reverse (-)

83495102 .. 83495892

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53689

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTTATTGTTTCAGAGCGCGTCGGACATGGAATTTTTCAGAAATGCCAAAGTGGTACGGTTACGAAGCCACCATGACAAATATCTATCAGCAAATGAAGATGGAGAGACTGTAACACAAGATAAGGATGGAACAGCCACCAATGCTAGATGGACAGTGGAGTTTGTTAACCATGCAGACACTCTGCGTTTCAAAAGCTGTTACGGAAAATACCTAAAGGCGTCAAGCTTGCCATTCAAACCAGGCTTGAGAGGCATTAACAAAGTCCTGCAAACCAAGCCAAGGAGATTGGATTCTTCTCTGGAATGGGAGCCTGTAAGTGATGGATATCAGGTCAGGCTCAGGACGCCCTACGGTCAATTCTTGTGCGCCAATGGGGGCGTTCCACCTTTGAGAAATTCGATCACGCATGACGCCCCTCAAAAAACTGTGAGGCAGGATTGGATTCTATGGGATGTAGATGTCTTAGAGATGCGTTCAGAAGATGATACAACAAATGATGACGCAGAATCTTCACAATCAGAAGAACCCAGATCTCCACCGGGAGACATTAAAATGCCTTTAGGAAAACGGGGCAAAATTCGCAAAGAAGTTAAAGAAAATGTTACTCGCATTTCTGATAAAATATCTTCGATTAAATCGAAAGTAACAGTTAAGGTGAGTCAGAAGAGGCGGCCGCCTAAAGTCCAATATTTTTCCGATAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF569

Protein Analysis

236

Amino Acids

26.99

Weight (kDa)

9.53

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF569	PF04601	10 - 151	1.6e-56	Beta-trefoil domain of unknown function (DUF569)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01311 AT3G01311 AT3G28630 AT3G28630
fragaria_vesca	FvH4_6g49410 FvH4_6g49420
malus_domestica	MD09G1045600.v1.1 MD17G1046300.v1.1
prunus_persica	Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273100_v2.0.a1
pyrus_communis	pycom111g03500
rosa_chinensis	RchiOBHm_Chr2g0169291 RchiOBHm_Chr2g0169301 RchiOBHm_Chr2g0169311
rosa_laevigata	RLG00000021852 RLG00000021853 RLG00000021854
rosa_multiflora	Rmu_co8313715.1_g000001 Rmu_ssc0000399.1_g000006 Rmu_ssc0000399.1_g000007 Rmu_ssc0000399.1_g000010
rosa_roxburghii	Rroxscaffold_2G00082250 Rroxscaffold_2G00082270 Rroxscaffold_2G00082280
rosa_rugosa	Rorug02G0538600 Rorug02G0538700 Rorug02G0538800 Rorug02G0538900 Rorug02G0539000 Rorug02G0539100 Rorug02G0539300 Rorug02G0539300
rosa_samantha	Rh2AG610400 Rh2AG610500 Rh2AG610600 Rh2BG623300 Rh2BG623600 Rh2BG623800 Rh2CG591700 Rh2CG592000 Rh2CG592100 Rh2DG634300 Rh2DG634600 Rh2DG634700
rosa_wichuraiana	Rw2G050620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AciI	CCGC	2 cut(s)	673, 677
AcoI	YGGCCR	1 cut(s)	674
AcsI	RAATTY	3 cut(s)	32, 397, 579
AcyI	GRCGYC	3 cut(s)	221, 347, 414
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	2 cut(s)	193, 238
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	2 cut(s)	198, 228
AluI	AGCT	2 cut(s)	198, 228
Alw26I	GTCTC	2 cut(s)	101, 540
AoxI	GGCC	1 cut(s)	674
ApoI	RAATTY	3 cut(s)	32, 397, 579
AspLEI	GCGC	2 cut(s)	20, 371
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	1 cut(s)	670
BccI	CCATC	4 cut(s)	95, 122, 144, 317
BciT130I	CCWGG	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	2 cut(s)	101, 540
BfaI	CTAG	1 cut(s)	147
BglII	AGATCT	1 cut(s)	533
BisI	GCNGC	2 cut(s)	674, 677
BlsI	GCNGC	2 cut(s)	675, 678
Bme1390I	CCNGG	2 cut(s)	243, 543
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	243, 543
BmsI	GCATC	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	268
BpuMI	CCSGG	1 cut(s)	543
BsaBI	GATNNNNATC	1 cut(s)	327
BsaHI	GRCGYC	3 cut(s)	221, 347, 414
BsaJI	CCNNGG	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	133, 460
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	355
BseX3I	CGGCCG	1 cut(s)	674
Bsh1236I	CGCG	1 cut(s)	20
Bsh1285I	CGRYCG	1 cut(s)	677
BshFI	GGCC	1 cut(s)	676
BsiEI	CGRYCG	1 cut(s)	677
BsiSI	CCGG	1 cut(s)	542
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	2 cut(s)	101, 540
BsnI	GGCC	1 cut(s)	676
Bsp143I	GATC	2 cut(s)	402, 533
BspACI	CCGC	2 cut(s)	673, 677
BspANI	GGCC	1 cut(s)	676
BspCNI	CTCAG	1 cut(s)	354
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	2 cut(s)	402, 533
BssNI	GRCGYC	3 cut(s)	221, 347, 414
BssT1I	CCWWGG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	6 cut(s)	60, 112, 157, 356, 430, 652
Bst6I	CTCTTC	1 cut(s)	662
BstACI	GRCGYC	3 cut(s)	221, 347, 414
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	341, 466
BstF5I	GGATG	2 cut(s)	133, 460
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	2 cut(s)	20, 371
BstKTI	GATC	2 cut(s)	405, 536
BstMAI	GTCTC	2 cut(s)	101, 540
BstMBI	GATC	2 cut(s)	402, 533
BstMCI	CGRYCG	1 cut(s)	677
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 252, 277, 346, 582
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	2 cut(s)	241, 541
BstUI	CGCG	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BstZI	CGGCCG	1 cut(s)	674
BsuRI	GGCC	1 cut(s)	676
BtsCI	GGATG	2 cut(s)	133, 460
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	230
CciNI	GCGGCCGC	1 cut(s)	674
CfoI	GCGC	2 cut(s)	20, 371
CseI	GACGC	5 cut(s)	9, 210, 355, 422, 512
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	4 cut(s)	28, 74, 173, 410
CviJI	RGCY	9 cut(s)	69, 137, 198, 228, 246, 280, 313, 340, 676
CviKI_1	RGCY	9 cut(s)	69, 137, 198, 228, 246, 280, 313, 340, 676
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	341, 466
DpnI	GATC	2 cut(s)	404, 535
DpnII	GATC	2 cut(s)	402, 533
EaeI	YGGCCR	1 cut(s)	674
EagI	CGGCCG	1 cut(s)	674
Eam1104I	CTCTTC	1 cut(s)	662
EarI	CTCTTC	1 cut(s)	662
EclXI	CGGCCG	1 cut(s)	674
Eco130I	CCWWGG	1 cut(s)	281
Eco32I	GATATC	1 cut(s)	329
Eco52I	CGGCCG	1 cut(s)	674
EcoRII	CCWGG	1 cut(s)	241
EcoRV	GATATC	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	4 cut(s)	31, 77, 176, 413
FaiI	YATR	5 cut(s)	29, 75, 174, 411, 451
FatI	CATG	4 cut(s)	27, 73, 172, 409
Fnu4HI	GCNGC	2 cut(s)	674, 677
FokI	GGATG	2 cut(s)	140, 467
Fsp4HI	GCNGC	2 cut(s)	674, 677
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	2 cut(s)	19, 370
GluI	GCNGC	2 cut(s)	674, 677
HaeIII	GGCC	1 cut(s)	676
HapII	CCGG	1 cut(s)	542
HgaI	GACGC	5 cut(s)	9, 210, 355, 422, 512
HhaI	GCGC	2 cut(s)	20, 371
Hin1I	GRCGYC	3 cut(s)	221, 347, 414
Hin1II	CATG	4 cut(s)	31, 77, 176, 413
Hin6I	GCGC	2 cut(s)	18, 369
HinP1I	GCGC	2 cut(s)	18, 369
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	4 cut(s)	293, 445, 509, 661
HpaI	GTTAAC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	1 cut(s)	670
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	8 cut(s)	15, 25, 41, 481, 523, 619, 666, 700
Hpy188III	TCNNGA	2 cut(s)	302, 343
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	25
HpyCH4III	ACNGT	6 cut(s)	60, 112, 157, 356, 430, 652
HpyCH4V	TGCA	2 cut(s)	176, 271
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 252, 277, 346, 582
HpyF3I	CTNAG	2 cut(s)	341, 466
Hsp92I	GRCGYC	3 cut(s)	221, 347, 414
Hsp92II	CATG	4 cut(s)	31, 77, 176, 413
HspAI	GCGC	2 cut(s)	18, 369
KspAI	GTTAAC	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	402, 533
LmnI	GCTCC	1 cut(s)	310
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	5 cut(s)	60, 112, 200, 604, 646
MalI	GATC	2 cut(s)	404, 535
MboI	GATC	2 cut(s)	402, 533
MboII	GAAGA	7 cut(s)	110, 288, 494, 504, 536, 621, 679
MflI	RGATCY	1 cut(s)	533
MluCI	AATT	4 cut(s)	32, 359, 397, 579
MlyI	GAGTC	1 cut(s)	670
MnlI	CCTC	4 cut(s)	245, 426, 429, 663
MseI	TTAA	6 cut(s)	168, 258, 552, 594, 636, 654
MslI	CAYNNNNRTG	1 cut(s)	554
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	2 cut(s)	243, 543
MvaI	CCWGG	1 cut(s)	243
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	5 cut(s)	143, 252, 277, 346, 582
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	2 cut(s)	402, 533
NlaIII	CATG	4 cut(s)	31, 77, 176, 413
NlaIV	GGNNCC	1 cut(s)	312
NotI	GCGGCCGC	1 cut(s)	674
PcsI	WCGNNNNNNNCGW	1 cut(s)	638
PfeI	GAWTC	3 cut(s)	293, 445, 509
PkrI	GCNGC	2 cut(s)	675, 678
PleI	GAGTC	1 cut(s)	669
PpsI	GAGTC	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	554
SaqAI	TTAA	6 cut(s)	168, 258, 552, 594, 636, 654
SatI	GCNGC	2 cut(s)	674, 677
Sau3AI	GATC	2 cut(s)	402, 533
SchI	GAGTC	1 cut(s)	670
ScrFI	CCNGG	2 cut(s)	243, 543
SetI	ASST	6 cut(s)	200, 216, 230, 336, 391, 660
SfaNI	GCATC	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	4 cut(s)	32, 359, 397, 579
SsiI	CCGC	2 cut(s)	673, 677
SspI	AATATT	1 cut(s)	692
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	241, 541
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	6 cut(s)	60, 112, 157, 356, 430, 652
TaqI	TCGA	3 cut(s)	401, 632, 641
TasI	AATT	4 cut(s)	32, 359, 397, 579
TauI	GCSGC	2 cut(s)	676, 679
TfiI	GAWTC	3 cut(s)	293, 445, 509
Tru1I	TTAA	6 cut(s)	168, 258, 552, 594, 636, 654
Tru9I	TTAA	6 cut(s)	168, 258, 552, 594, 636, 654
TscAI	CASTG	1 cut(s)	162
TspDTI	ATGAA	1 cut(s)	111
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	3 cut(s)	32, 397, 579
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.