Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001705

Physical Location & Seq

Genomic Coordinates Reverse (-)

78813282 .. 78814376

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021852

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAGTTTTTCAAAAGAGCTAGAGTGGTACGATTGCGAAGCCACCATGAAAAATATCTATTAGCAGAGGATGATCAAGAGACTGTGTGCCAAGATCGTGATGGAACGGCGAGGAATGCTACATGGACAGTGGAGATTGTCCAAAGTGGAACAGCTTTACGTTTGAAAAGCTGTTATGGGAAATACTTAACAGCTTCTAACATGCCATTCCGTCTAGGATTGAGAGGCAAGAAAGTCCTACAAACCCTGCCAAAGAGACTCGATTCTTCTTTGGAATGGGAGCCTGTAAGGGAAGGATACCGGATTAAGCTCAAGACACCCTATGGTCAATTCTTGCGTGCAAATGGCGGTGTACCACCTTGGAGAAACTCCATCACCCATGATGTTCCTCATAGATCTGCAAGACAGGATTGGGTTTTGTGGGATATAGATGTTGTGGAGCTTAAACGTGATTCTCCAGAACATCCATCAATGGCTGCGGCACAGCCCACCCCTGCAAGGGCACAATCCCCTCCTGCAAGGGCACAATCACCTCCTGGAAAGCCACAGTCCCCTCCTGCAGCGCCACAATCCCCTCCTGCAGTGGCACAATCCCCTACTTCTCCACCACCTGAATTACCTATAGAGATTTCAGAATCGAGCTCTCCGACTAAGATTGAGCTTAGGTCCCCCCAACTTCTCCAAAAAGAGTCAAGGAAGTCAATTGATCATGGTTCGCCAAGGAACAATGGAAGAATGATCTTCTATCATGTAGCAGATGACAAAGGAGAAGCCCATGACGGTGGAACAGAAAGTGTTTCCTTTTCATTCAAAGGTAGTGAGGTAGAGGCGTTGAAGAAAAGGTTGAAGGAAGAGACAGGGCTCGAGGAATTTGAAGTATGTTCACGCAATCCACTGAATGGCCAACTTTACCCACTTCGCTTACATCTTCCTCCAAACAACCATGATATGCATATTGTGGTGGTTCCCTTCTTGACCGAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF569

Protein Analysis

329

Amino Acids

36.79

Weight (kDa)

9.02

Isoelectric Point (pI)

76.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF569	PF04601	1 - 141	1.1e-67	Beta-trefoil domain of unknown function (DUF569)
Ubiq_DUF_assoc	PF22932	244 - 322	3.3e-10	DUF569 associated ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01311 AT3G01311 AT3G28630 AT3G28630
fragaria_vesca	FvH4_6g49410 FvH4_6g49420
malus_domestica	MD09G1045600.v1.1 MD17G1046300.v1.1
prunus_persica	Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273100_v2.0.a1
pyrus_communis	pycom111g03500
rosa_chinensis	RchiOBHm_Chr2g0169291 RchiOBHm_Chr2g0169301 RchiOBHm_Chr2g0169311
rosa_laevigata	RLG00000021852 RLG00000021853 RLG00000021854
rosa_multiflora	Rmu_co8313715.1_g000001 Rmu_ssc0000399.1_g000006 Rmu_ssc0000399.1_g000007 Rmu_ssc0000399.1_g000010
rosa_roxburghii	Rroxscaffold_2G00082250 Rroxscaffold_2G00082270 Rroxscaffold_2G00082280
rosa_rugosa	Rorug02G0538600 Rorug02G0538700 Rorug02G0538800 Rorug02G0538900 Rorug02G0539000 Rorug02G0539100 Rorug02G0539300 Rorug02G0539300
rosa_samantha	Rh2AG610400 Rh2AG610500 Rh2AG610600 Rh2BG623300 Rh2BG623600 Rh2BG623800 Rh2CG591700 Rh2CG592000 Rh2CG592100 Rh2DG634300 Rh2DG634600 Rh2DG634700
rosa_wichuraiana	Rw2G050620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	899
AciI	CCGC	2 cut(s)	348, 479
AcoI	YGGCCR	1 cut(s)	901
AcsI	RAATTY	1 cut(s)	869
AfaI	GTAC	2 cut(s)	30, 354
AfiI	CCNNNNNNNGG	3 cut(s)	498, 499, 899
AgsI	TTSAA	6 cut(s)	13, 166, 811, 835, 847, 875
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	8 cut(s)	20, 155, 171, 194, 310, 442, 642, 661
AluI	AGCT	8 cut(s)	20, 155, 171, 194, 310, 442, 642, 661
Alw21I	GWGCWC	1 cut(s)	644
Alw26I	GTCTC	3 cut(s)	74, 250, 848
Ama87I	CYCGRG	1 cut(s)	863
AoxI	GGCC	1 cut(s)	901
ApeKI	GCWGC	2 cut(s)	476, 560
ApoI	RAATTY	1 cut(s)	869
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	666
AsuHPI	GGTGA	2 cut(s)	367, 522
AvaI	CYCGRG	1 cut(s)	863
AvaII	GGWCC	1 cut(s)	666
BaeGI	GKGCMC	2 cut(s)	505, 526
BalI	TGGCCA	1 cut(s)	903
BanII	GRGCYC	2 cut(s)	644, 864
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	2 cut(s)	463, 572
BccI	CCATC	3 cut(s)	95, 380, 475
BceAI	ACGGC	1 cut(s)	123
BciT130I	CCWGG	1 cut(s)	537
BciVI	GTATCC	1 cut(s)	290
BclI	TGATCA	2 cut(s)	73, 706
BcoDI	GTCTC	3 cut(s)	74, 250, 848
BfaI	CTAG	2 cut(s)	21, 215
BfmI	CTRYAG	3 cut(s)	558, 579, 621
BfoI	RGCGCY	1 cut(s)	566
BfuI	GTATCC	1 cut(s)	290
BglII	AGATCT	1 cut(s)	395
BisI	GCNGC	3 cut(s)	477, 480, 561
BlsI	GCNGC	3 cut(s)	478, 481, 562
Bme1390I	CCNGG	1 cut(s)	537
Bme18I	GGWCC	1 cut(s)	666
BmeT110I	CYCGRG	1 cut(s)	863
BmgT120I	GGNCC	1 cut(s)	666
BmiI	GGNNCC	3 cut(s)	282, 668, 966
BmrFI	CCNGG	1 cut(s)	537
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	662
BpuEI	CTTGAG	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	359, 719
BsaWI	WCCGGW	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	3 cut(s)	498, 499, 899
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	359, 719
BseGI	GGATG	2 cut(s)	76, 463
BseLI	CCNNNNNNNGG	3 cut(s)	498, 499, 899
BseSI	GKGCMC	2 cut(s)	505, 526
BseXI	GCAGC	2 cut(s)	463, 572
BshFI	GGCC	1 cut(s)	903
BsiHKAI	GWGCWC	1 cut(s)	644
BsiHKCI	CYCGRG	1 cut(s)	863
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	2 cut(s)	535, 652
BslI	CCNNNNNNNGG	3 cut(s)	498, 499, 899
BsmAI	GTCTC	3 cut(s)	74, 250, 848
BsmFI	GGGAC	2 cut(s)	535, 652
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	903
BsoBI	CYCGRG	1 cut(s)	863
Bsp1286I	GDGCHC	4 cut(s)	505, 526, 644, 864
Bsp143I	GATC	5 cut(s)	73, 94, 395, 706, 738
BspACI	CCGC	2 cut(s)	348, 479
BspANI	GGCC	1 cut(s)	903
BspLI	GGNNCC	3 cut(s)	282, 668, 966
BspMAI	CTGCAG	2 cut(s)	562, 583
BssECI	CCNNGG	2 cut(s)	359, 719
BssMI	GATC	5 cut(s)	73, 94, 395, 706, 738
BssT1I	CCWWGG	2 cut(s)	359, 719
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	4 cut(s)	85, 130, 549, 782
Bst6I	CTCTTC	1 cut(s)	846
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	651, 662
BstF5I	GGATG	2 cut(s)	76, 463
BstH2I	RGCGCY	1 cut(s)	566
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	5 cut(s)	76, 97, 398, 709, 741
BstMAI	GTCTC	3 cut(s)	74, 250, 848
BstMBI	GATC	5 cut(s)	73, 94, 395, 706, 738
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	537
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	535
BstSFI	CTRYAG	3 cut(s)	558, 579, 621
BstSLI	GKGCMC	2 cut(s)	505, 526
BstV1I	GCAGC	2 cut(s)	463, 572
BstX2I	RGATCY	1 cut(s)	395
BstXI	CCANNNNNNTGG	1 cut(s)	782
BstYI	RGATCY	1 cut(s)	395
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	903
BtsCI	GGATG	2 cut(s)	76, 463
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	3 cut(s)	135, 588, 893
Cac8I	GCNNGC	1 cut(s)	339
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	666
Csp6I	GTAC	2 cut(s)	29, 353
CviAII	CATG	8 cut(s)	47, 123, 202, 380, 710, 749, 776, 944
CviQI	GTAC	2 cut(s)	29, 353
DdeI	CTNAG	2 cut(s)	651, 662
DpnI	GATC	5 cut(s)	75, 96, 397, 708, 740
DpnII	GATC	5 cut(s)	73, 94, 395, 706, 738
EaeI	YGGCCR	1 cut(s)	901
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
Ecl136II	GAGCTC	1 cut(s)	642
Eco130I	CCWWGG	2 cut(s)	359, 719
Eco24I	GRGCYC	2 cut(s)	644, 864
Eco47I	GGWCC	1 cut(s)	666
Eco53kI	GAGCTC	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	863
EcoICRI	GAGCTC	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	666
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	2 cut(s)	359, 719
EcoT22I	ATGCAT	1 cut(s)	954
EcoT38I	GRGCYC	2 cut(s)	644, 864
ErhI	CCWWGG	2 cut(s)	359, 719
FaeI	CATG	8 cut(s)	50, 126, 205, 383, 713, 752, 779, 947
FaqI	GGGAC	2 cut(s)	535, 652
FatI	CATG	8 cut(s)	46, 122, 201, 379, 709, 748, 775, 943
FbaI	TGATCA	2 cut(s)	73, 706
Fnu4HI	GCNGC	3 cut(s)	477, 480, 561
FokI	GGATG	2 cut(s)	83, 450
FriOI	GRGCYC	2 cut(s)	644, 864
Fsp4HI	GCNGC	3 cut(s)	477, 480, 561
FspBI	CTAG	2 cut(s)	21, 215
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	3 cut(s)	477, 480, 561
GsuI	CTGGAG	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	566
HaeIII	GGCC	1 cut(s)	903
HapII	CCGG	1 cut(s)	301
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	8 cut(s)	50, 126, 205, 383, 713, 752, 779, 947
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HinfI	GANTC	5 cut(s)	258, 263, 452, 635, 689
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	2 cut(s)	367, 522
Hpy166II	GTNNAC	2 cut(s)	353, 884
Hpy188I	TCNGA	2 cut(s)	634, 648
Hpy188III	TCNNGA	5 cut(s)	77, 98, 313, 458, 973
Hpy8I	GTNNAC	2 cut(s)	353, 884
HpyAV	CCTTC	4 cut(s)	287, 841, 974, 979
HpyCH4III	ACNGT	4 cut(s)	85, 130, 549, 782
HpyCH4IV	ACGT	2 cut(s)	160, 448
HpyCH4V	TGCA	7 cut(s)	341, 401, 497, 518, 560, 581, 952
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	651, 662
HpySE526I	ACGT	2 cut(s)	160, 448
Hsp92II	CATG	8 cut(s)	50, 126, 205, 383, 713, 752, 779, 947
HspAI	GCGC	1 cut(s)	563
Ksp22I	TGATCA	2 cut(s)	73, 706
Kzo9I	GATC	5 cut(s)	73, 94, 395, 706, 738
LmnI	GCTCC	2 cut(s)	280, 439
Lsp1109I	GCAGC	2 cut(s)	463, 572
MaeI	CTAG	2 cut(s)	21, 215
MaeII	ACGT	2 cut(s)	160, 448
MalI	GATC	5 cut(s)	75, 96, 397, 708, 740
MboI	GATC	5 cut(s)	73, 94, 395, 706, 738
MboII	GAAGA	6 cut(s)	258, 733, 744, 847, 863, 920
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	4 cut(s)	505, 526, 644, 864
MlsI	TGGCCA	1 cut(s)	903
MluCI	AATT	4 cut(s)	329, 614, 702, 869
MluNI	TGGCCA	1 cut(s)	903
MlyI	GAGTC	2 cut(s)	252, 698
MmeI	TCCRAC	1 cut(s)	671
Mox20I	TGGCCA	1 cut(s)	903
Mph1103I	ATGCAT	1 cut(s)	954
MscI	TGGCCA	1 cut(s)	903
MseI	TTAA	3 cut(s)	188, 306, 444
MslI	CAYNNNNRTG	1 cut(s)	780
Msp20I	TGGCCA	1 cut(s)	903
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	537
MunI	CAATTG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	5 cut(s)	73, 94, 395, 706, 738
NlaIII	CATG	8 cut(s)	50, 126, 205, 383, 713, 752, 779, 947
NlaIV	GGNNCC	3 cut(s)	282, 668, 966
NsiI	ATGCAT	1 cut(s)	954
NspI	RCATGY	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	863
PcsI	WCGNNNNNNNCGW	1 cut(s)	644
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	3 cut(s)	263, 452, 635
PflMI	CCANNNNNTGG	1 cut(s)	899
PfoI	TCCNGGA	1 cut(s)	535
PkrI	GCNGC	3 cut(s)	478, 481, 562
PleI	GAGTC	2 cut(s)	252, 697
PpsI	GAGTC	2 cut(s)	252, 697
PpuMI	RGGWCCY	1 cut(s)	666
Psp124BI	GAGCTC	1 cut(s)	644
Psp5II	RGGWCCY	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	3 cut(s)	282, 668, 966
PspPI	GGNCC	1 cut(s)	666
PspPPI	RGGWCCY	1 cut(s)	666
PspXI	VCTCGAGB	1 cut(s)	863
PstI	CTGCAG	2 cut(s)	562, 583
PsuI	RGATCY	1 cut(s)	395
RsaI	GTAC	2 cut(s)	30, 354
RsaNI	GTAC	2 cut(s)	29, 353
RseI	CAYNNNNRTG	1 cut(s)	780
SacI	GAGCTC	1 cut(s)	644
SaqAI	TTAA	3 cut(s)	188, 306, 444
SatI	GCNGC	3 cut(s)	477, 480, 561
Sau3AI	GATC	5 cut(s)	73, 94, 395, 706, 738
Sau96I	GGNCC	1 cut(s)	666
SchI	GAGTC	2 cut(s)	252, 698
ScrFI	CCNGG	1 cut(s)	537
SduI	GDGCHC	4 cut(s)	505, 526, 644, 864
SfcI	CTRYAG	3 cut(s)	558, 579, 621
Sfr274I	CTCGAG	1 cut(s)	863
SinI	GGWCC	1 cut(s)	666
SlaI	CTCGAG	1 cut(s)	863
SmiMI	CAYNNNNRTG	1 cut(s)	780
SmlI	CTYRAG	2 cut(s)	311, 863
SmoI	CTYRAG	2 cut(s)	311, 863
Sse9I	AATT	4 cut(s)	329, 614, 702, 869
SsiI	CCGC	2 cut(s)	348, 479
SspMI	CTAG	2 cut(s)	21, 215
SstI	GAGCTC	1 cut(s)	644
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	2 cut(s)	359, 719
TaaI	ACNGT	4 cut(s)	85, 130, 549, 782
TaiI	ACGT	2 cut(s)	163, 451
TaqI	TCGA	3 cut(s)	261, 638, 864
TasI	AATT	4 cut(s)	329, 614, 702, 869
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	3 cut(s)	263, 452, 635
Tru1I	TTAA	3 cut(s)	188, 306, 444
Tru9I	TTAA	3 cut(s)	188, 306, 444
TscAI	CASTG	3 cut(s)	135, 588, 900
TseI	GCWGC	2 cut(s)	476, 560
TspDTI	ATGAA	2 cut(s)	63, 795
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	3 cut(s)	135, 588, 900
Van91I	CCANNNNNTGG	1 cut(s)	899
VpaK11BI	GGWCC	1 cut(s)	666
XapI	RAATTY	1 cut(s)	869
XceI	RCATGY	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XhoI	CTCGAG	1 cut(s)	863
XspI	CTAG	2 cut(s)	21, 215
Zsp2I	ATGCAT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.