Rorug02G0539000

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001705
Physical Location & Seq
Forward (+)
66862754 .. 66865654
2901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0539000.1

Sequence Viewer

Length: 666 bp
ATGAAGAACTGCGAGCTTTGTCACCTACCTGCGCGGACCTACTGCGAATCGGACCAGGCGATTCTCTGCTGGGACTGCGATTTCAAGGTTCACGGCGCCAATTTCCTGGTGGCCAGGCACTCCAGGACGCTCCTCTGCCACGCGTGCCACGCGCCGACTGCCTGGAAGGCCTCCGGCGAGAAACTCGGCCATACTTTTTCGGTTTGCGAGCGCTGTGTGGCGAGAAATGAAAGCAGAGACGACGAGGAAGAGAGCCAGGCTGGCAATGATGATGCTACGGATGATGATGACCTCGATGACTCCGATTATGATGATGACGACGGCGATATTGATTTTGATGACGACGGAGATAATCAGGTGGTGCCGTGGGGTTCGACGCCTCCTCCGCCAGCTGCGAGCTCTACCAGCAGCGACGAGGTTAGCAATGACGGTAGATATGGTCGCCGATCAGTAGGCGCGGTTTCGTTGAAGCGAACCAGAGATAATGCTTCCGATCTTCGCTCTCTGGACGATCTCCGCCGTTTAGCCGCTCGACTGAGGGGTGAAACAGCTGGCACCGCCCATTCCGGTCGGTCAGGGACCGACGGCGGAGCCACTTTGGTTGACTGCAGAAGACCTTCAAAAGACCGGAGAGTGGATCCAAACGGGTCGGGTCCGCGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF569

Protein Analysis

221

Amino Acids

24.07

Weight (kDa)

4.73

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 2 - 43 1.7e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 37
AccB1I GGYRCC 3 cut(s) 95, 361, 554
AccBSI CCGCTC 1 cut(s) 530
AccII CGCG 5 cut(s) 34, 143, 152, 458, 658
AciI CCGC 8 cut(s) 34, 386, 458, 517, 528, 558, 588, 656
AclWI GGATC 2 cut(s) 632, 645
AcoI YGGCCR 2 cut(s) 111, 187
AcyI GRCGYC 2 cut(s) 96, 377
AfeI AGCGCT 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 634
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 3 cut(s) 85, 469, 621
AjnI CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
AluBI AGCT 4 cut(s) 16, 392, 399, 551
AluI AGCT 4 cut(s) 16, 392, 399, 551
Alw21I GWGCWC 1 cut(s) 401
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 2 cut(s) 632, 645
Aor51HI AGCGCT 1 cut(s) 212
AoxI GGCC 3 cut(s) 111, 168, 187
ApeKI GCWGC 2 cut(s) 392, 408
Asp700I GAANNNNTTC 1 cut(s) 616
AspLEI GCGC 5 cut(s) 34, 98, 154, 213, 458
AspS9I GGNCC 4 cut(s) 36, 52, 579, 653
AsuHPI GGTGA 2 cut(s) 14, 554
AvaII GGWCC 4 cut(s) 36, 52, 579, 653
BalI TGGCCA 1 cut(s) 113
BamHI GGATCC 1 cut(s) 637
BanI GGYRCC 3 cut(s) 95, 361, 554
BanII GRGCYC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 619
Bbv12I GWGCWC 1 cut(s) 401
BbvI GCAGC 2 cut(s) 379, 420
BceAI ACGGC 5 cut(s) 109, 337, 349, 504, 601
BciT130I CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
BcoDI GTCTC 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 607
BfoI RGCGCY 2 cut(s) 99, 214
BfuAI ACCTGC 1 cut(s) 37
BglI GCCNNNNNGGC 2 cut(s) 167, 261
BisI GCNGC 3 cut(s) 393, 409, 528
BlsI GCNGC 3 cut(s) 394, 410, 529
Bme1390I CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
Bme18I GGWCC 4 cut(s) 36, 52, 579, 653
BmgT120I GGNCC 4 cut(s) 36, 52, 579, 653
BmiI GGNNCC 7 cut(s) 97, 363, 556, 580, 592, 639, 654
BmrFI CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 619
BpmI CTGGAG 1 cut(s) 106
BsaHI GRCGYC 2 cut(s) 96, 377
BsaJI CCNNGG 1 cut(s) 365
BsaWI WCCGGW 2 cut(s) 566, 627
BsaXI ACNNNNNCTCC 2 cut(s) 367, 397
Bsc4I CCNNNNNNNGG 1 cut(s) 634
Bse3DI GCAATG 2 cut(s) 271, 430
BseBI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 634
BseMI GCAATG 2 cut(s) 271, 430
BseMII CTCAG 1 cut(s) 527
BseRI GAGGAG 2 cut(s) 122, 372
BseXI GCAGC 2 cut(s) 379, 420
BseYI CCCAGC 1 cut(s) 69
Bsh1236I CGCG 5 cut(s) 34, 143, 152, 458, 658
Bsh1285I CGRYCG 1 cut(s) 571
BshFI GGCC 3 cut(s) 113, 170, 189
BshNI GGYRCC 3 cut(s) 95, 361, 554
BsiEI CGRYCG 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 401
BsiSI CCGG 3 cut(s) 174, 567, 628
BslFI GGGAC 2 cut(s) 86, 592
BslI CCNNNNNNNGG 1 cut(s) 634
BsmAI GTCTC 1 cut(s) 231
BsmBI CGTCTC 1 cut(s) 231
BsmFI GGGAC 2 cut(s) 86, 592
BsnI GGCC 3 cut(s) 113, 170, 189
Bsp1286I GDGCHC 1 cut(s) 401
Bsp143I GATC 4 cut(s) 446, 493, 511, 637
BspACI CCGC 8 cut(s) 34, 386, 458, 517, 528, 558, 588, 656
BspANI GGCC 3 cut(s) 113, 170, 189
BspCNI CTCAG 1 cut(s) 528
BspFNI CGCG 5 cut(s) 34, 143, 152, 458, 658
BspLI GGNNCC 7 cut(s) 97, 363, 556, 580, 592, 639, 654
BspMAI CTGCAG 1 cut(s) 611
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 2 cut(s) 632, 645
BspT107I GGYRCC 3 cut(s) 95, 361, 554
BsrBI CCGCTC 1 cut(s) 530
BsrDI GCAATG 2 cut(s) 271, 430
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 4 cut(s) 446, 493, 511, 637
BssNI GRCGYC 2 cut(s) 96, 377
Bst2UI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 2 cut(s) 96, 377
BstC8I GCNNGC 7 cut(s) 14, 145, 209, 262, 390, 397, 553
BstDEI CTNAG 1 cut(s) 536
BstDSI CCRYGG 1 cut(s) 365
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 5 cut(s) 34, 143, 152, 458, 658
BstH2I RGCGCY 2 cut(s) 99, 214
BstHHI GCGC 5 cut(s) 34, 98, 154, 213, 458
BstKTI GATC 4 cut(s) 449, 496, 514, 640
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 4 cut(s) 446, 493, 511, 637
BstMCI CGRYCG 1 cut(s) 571
BstMWI GCNNNNNNNGC 9 cut(s) 75, 144, 149, 158, 167, 261, 385, 405, 557
BstNI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
BstSCI CCNGG 6 cut(s) 54, 105, 113, 122, 161, 255
BstSFI CTRYAG 1 cut(s) 607
BstUI CGCG 5 cut(s) 34, 143, 152, 458, 658
BstV1I GCAGC 2 cut(s) 379, 420
BstV2I GAAGAC 1 cut(s) 619
BstX2I RGATCY 1 cut(s) 637
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 1 cut(s) 637
BsuRI GGCC 3 cut(s) 113, 170, 189
BtgI CCRYGG 1 cut(s) 365
BtsCI GGATG 1 cut(s) 286
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 7 cut(s) 14, 145, 209, 262, 390, 397, 553
CfoI GCGC 5 cut(s) 34, 98, 154, 213, 458
Cfr13I GGNCC 4 cut(s) 36, 52, 579, 653
CseI GACGC 2 cut(s) 136, 385
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
DdeI CTNAG 1 cut(s) 536
DinI GGCGCC 1 cut(s) 97
DpnI GATC 4 cut(s) 448, 495, 513, 639
DpnII GATC 4 cut(s) 446, 493, 511, 637
EaeI YGGCCR 2 cut(s) 111, 187
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 3 cut(s) 375, 506, 603
Ecl136II GAGCTC 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 401
Eco47I GGWCC 4 cut(s) 36, 52, 579, 653
Eco47III AGCGCT 1 cut(s) 212
Eco53kI GAGCTC 1 cut(s) 399
EcoICRI GAGCTC 1 cut(s) 399
EcoRII CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
EcoT38I GRGCYC 1 cut(s) 401
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 231
FaiI YATR 4 cut(s) 192, 309, 438, 664
FaqI GGGAC 2 cut(s) 86, 592
Fnu4HI GCNGC 3 cut(s) 393, 409, 528
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 401
Fsp4HI GCNGC 3 cut(s) 393, 409, 528
GlaI GCGC 5 cut(s) 33, 97, 153, 212, 457
GluI GCNGC 3 cut(s) 393, 409, 528
GsaI CCCAGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 106
HaeII RGCGCY 2 cut(s) 99, 214
HaeIII GGCC 3 cut(s) 113, 170, 189
HapII CCGG 3 cut(s) 174, 567, 628
HgaI GACGC 2 cut(s) 136, 385
HhaI GCGC 5 cut(s) 34, 98, 154, 213, 458
Hin1I GRCGYC 2 cut(s) 96, 377
Hin6I GCGC 5 cut(s) 32, 96, 152, 211, 456
HinP1I GCGC 5 cut(s) 32, 96, 152, 211, 456
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 3 cut(s) 47, 61, 299
HpaII CCGG 3 cut(s) 174, 567, 628
HphI GGTGA 2 cut(s) 14, 554
Hpy166II GTNNAC 2 cut(s) 91, 604
Hpy188I TCNGA 3 cut(s) 52, 304, 493
Hpy188III TCNNGA 1 cut(s) 506
Hpy8I GTNNAC 2 cut(s) 91, 604
Hpy99I CGWCG 6 cut(s) 245, 323, 347, 379, 416, 587
HpyAV CCTTC 2 cut(s) 160, 627
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4V TGCA 1 cut(s) 609
HpyF10VI GCNNNNNNNGC 9 cut(s) 75, 144, 149, 158, 167, 261, 385, 405, 557
HpyF3I CTNAG 1 cut(s) 536
Hsp92I GRCGYC 2 cut(s) 96, 377
HspAI GCGC 5 cut(s) 32, 96, 152, 211, 456
KasI GGCGCC 1 cut(s) 95
Kzo9I GATC 4 cut(s) 446, 493, 511, 637
LmnI GCTCC 2 cut(s) 135, 590
Lsp1109I GCAGC 2 cut(s) 379, 420
LweI GCATC 1 cut(s) 262
MaeIII GTNAC 1 cut(s) 20
MalI GATC 4 cut(s) 448, 495, 513, 639
MbiI CCGCTC 1 cut(s) 530
MboI GATC 4 cut(s) 446, 493, 511, 637
MboII GAAGA 4 cut(s) 16, 260, 488, 624
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 1 cut(s) 401
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 1 cut(s) 100
MluI ACGCGT 1 cut(s) 141
MluNI TGGCCA 1 cut(s) 113
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 8 cut(s) 143, 181, 238, 302, 390, 393, 409, 531
Mox20I TGGCCA 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 616
MscI TGGCCA 1 cut(s) 113
Msp20I TGGCCA 1 cut(s) 113
MspA1I CMGCKG 2 cut(s) 392, 551
MspI CCGG 3 cut(s) 174, 567, 628
MspR9I CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
MvaI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
MvnI CGCG 5 cut(s) 34, 143, 152, 458, 658
MwoI GCNNNNNNNGC 9 cut(s) 75, 144, 149, 158, 167, 261, 385, 405, 557
NarI GGCGCC 1 cut(s) 96
NdeII GATC 4 cut(s) 446, 493, 511, 637
NlaIV GGNNCC 7 cut(s) 97, 363, 556, 580, 592, 639, 654
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 20
PceI AGGCCT 1 cut(s) 170
PcsI WCGNNNNNNNCGW 2 cut(s) 56, 300
PdmI GAANNNNTTC 1 cut(s) 616
PfeI GAWTC 2 cut(s) 47, 61
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 3 cut(s) 394, 410, 529
PleI GAGTC 1 cut(s) 293
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 293
Psp124BI GAGCTC 1 cut(s) 401
Psp6I CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
PspN4I GGNNCC 7 cut(s) 97, 363, 556, 580, 592, 639, 654
PspPI GGNCC 4 cut(s) 36, 52, 579, 653
PstI CTGCAG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 637
PvuII CAGCTG 2 cut(s) 392, 551
SacI GAGCTC 1 cut(s) 401
SatI GCNGC 3 cut(s) 393, 409, 528
Sau3AI GATC 4 cut(s) 446, 493, 511, 637
Sau96I GGNCC 4 cut(s) 36, 52, 579, 653
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
SduI GDGCHC 1 cut(s) 401
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 607
SfoI GGCGCC 1 cut(s) 97
SinI GGWCC 4 cut(s) 36, 52, 579, 653
Sse9I AATT 1 cut(s) 100
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 8 cut(s) 34, 386, 458, 517, 528, 558, 588, 656
SspDI GGCGCC 1 cut(s) 95
SstI GAGCTC 1 cut(s) 401
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 6 cut(s) 54, 105, 113, 122, 161, 255
TaaI ACNGT 1 cut(s) 431
TaqI TCGA 3 cut(s) 294, 374, 532
TaqII GACCGA 2 cut(s) 561, 596
TasI AATT 1 cut(s) 100
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 2 cut(s) 47, 61
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 392, 408
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 17, 243
TspGWI ACGGA 2 cut(s) 293, 360
VpaK11BI GGWCC 4 cut(s) 36, 52, 579, 653
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.