Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001705

Physical Location & Seq

Genomic Coordinates Forward (+)

10728951 .. 10730898

Gene Structure 1948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28630.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGATCTTCAATCCAATCCTTGGAGGTAAAATCGCAGCTGTGGCCATCAAAAGATCCCTGTTTCAGATTTTTGTAATTTTATACAAAAGAACAATAATGGAGATTTTCAAAAAGGCTGAAACCGTGCGTTTACGTAGCTACCACGACAAGTATCTTCTAGCAGAGGAGGATGAAGAATCCGTGAGCCAGGACAGAGACGGGCGGTCTATGAACGCAAGATGGACGGTGGAGGTTGTAGAAAAGGCGGATGTGATTCGTCTCAAGAGCTGCTTTGGCAAGTACCTAACCGCTTCAAACATCCCAATGTTCCTTGGGATGACTGGCAAGAGGGTGACACAAACGCTGCCACGGAGGCTAGACTCATCAACTGAATGGGAACCCGTTAGAGAAGGTGTTCAGGTTAGGCTCAAGACAAGGTATGGACAGTATCTCCGAGCTAATGGGGGTTTACCGCCATGGAGGAATTCGATTACCCATGATATACCTCATAGGTCAACCACACAGGATTGGGTTTTATGGGATATTGACATTCTGGAAAGCAGAAAGAAGAAAGCACCCCCAGTGGCTGAACCGGCTTATACGCCTCTCCCCCCTCCTCCACCACCACCAGAGCTTCTGCAAGTAAGAAAAGATGATCATCAAGAGCCCAATTCACCCAAAGGATTCTCTCTCAGGTCCCCAAGGTTTTCCAAATCCGAGTCTGATGACACTGTCAGCTCACCAGTCAAGGCAGATGGCAGACTAATTTATTATCGGATTGGGGACGAAGATGGGAACGTGGATGAAACAGCAAAGGAAGAGCTTTTCTGCTTCAAGGGAATGGGACTAGAAGAGCTGAAAGAGAAGCTTATAGAAGAGACAGGTCTGAGTGATATATCAATCTGTTCCAAAAACCCTTTAAACGGAAAATTATATCCCCTTCGGTTACATCTTCCTCCCAACAACACAAAGATGCATGTCGTATTGATCCCTTCGCCTTCAAAAGGGGATGCTGCAAGCACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF569

Protein Analysis

335

Amino Acids

37.97

Weight (kDa)

8.9

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF569	PF04601	33 - 173	6.9e-78	Beta-trefoil domain of unknown function (DUF569)
Ubiq_DUF_assoc	PF22932	232 - 308	8.6e-07	DUF569 associated ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01311 AT3G01311 AT3G28630 AT3G28630
fragaria_vesca	FvH4_6g49410 FvH4_6g49420
malus_domestica	MD09G1045600.v1.1 MD17G1046300.v1.1
prunus_persica	Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273100_v2.0.a1
pyrus_communis	pycom111g03500
rosa_chinensis	RchiOBHm_Chr2g0169291 RchiOBHm_Chr2g0169301 RchiOBHm_Chr2g0169311
rosa_laevigata	RLG00000021852 RLG00000021853 RLG00000021854
rosa_multiflora	Rmu_co8313715.1_g000001 Rmu_ssc0000399.1_g000006 Rmu_ssc0000399.1_g000007 Rmu_ssc0000399.1_g000010
rosa_roxburghii	Rroxscaffold_2G00082250 Rroxscaffold_2G00082270 Rroxscaffold_2G00082280
rosa_rugosa	Rorug02G0538600 Rorug02G0538700 Rorug02G0538800 Rorug02G0538900 Rorug02G0539000 Rorug02G0539100 Rorug02G0539300 Rorug02G0539300
rosa_samantha	Rh2AG610400 Rh2AG610500 Rh2AG610600 Rh2BG623300 Rh2BG623600 Rh2BG623800 Rh2CG591700 Rh2CG592000 Rh2CG592100 Rh2DG634300 Rh2DG634600 Rh2DG634700
rosa_wichuraiana	Rw2G050620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	20
AciI	CCGC	4 cut(s)	202, 245, 288, 452
AclWI	GGATC	2 cut(s)	48, 961
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	463
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	20, 902, 983
AgsI	TTSAA	5 cut(s)	10, 109, 294, 814, 981
AhdI	GACNNNNNGTC	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	9 cut(s)	38, 138, 267, 437, 613, 717, 802, 835, 847
AluI	AGCT	9 cut(s)	38, 138, 267, 437, 613, 717, 802, 835, 847
Alw26I	GTCTC	3 cut(s)	189, 263, 851
AlwI	GGATC	2 cut(s)	48, 961
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	4 cut(s)	35, 267, 343, 992
ApoI	RAATTY	1 cut(s)	463
Asp700I	GAANNNNTTC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	675
AsuHPI	GGTGA	3 cut(s)	343, 645, 711
AvaII	GGWCC	1 cut(s)	675
BalI	TGGCCA	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	648
BbvI	GCAGC	4 cut(s)	47, 254, 330, 979
BccI	CCATC	4 cut(s)	53, 213, 728, 764
BciT130I	CCWGG	1 cut(s)	188
BclI	TGATCA	1 cut(s)	634
BcoDI	GTCTC	3 cut(s)	189, 263, 851
BfaI	CTAG	3 cut(s)	158, 356, 827
BglI	GCCNNNNNGGC	1 cut(s)	352
BisI	GCNGC	4 cut(s)	36, 268, 344, 993
BlsI	GCNGC	4 cut(s)	37, 269, 345, 994
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	675
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	675
BmiI	GGNNCC	2 cut(s)	378, 677
BmrFI	CCNGG	1 cut(s)	188
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	2 cut(s)	942, 979
BmuI	ACTGGG	1 cut(s)	554
BpuEI	CTTGAG	2 cut(s)	245, 392
BsaAI	YACGTR	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	5 cut(s)	19, 310, 347, 455, 680
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 902, 983
Bse118I	RCCGGY	1 cut(s)	571
Bse1I	ACTGG	3 cut(s)	325, 560, 722
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	5 cut(s)	19, 310, 347, 455, 680
BseGI	GGATG	6 cut(s)	175, 253, 297, 321, 787, 994
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	3 cut(s)	20, 902, 983
BseMII	CTCAG	2 cut(s)	685, 857
BseNI	ACTGG	3 cut(s)	325, 560, 722
BseRI	GAGGAG	2 cut(s)	179, 585
BseXI	GCAGC	4 cut(s)	47, 254, 330, 979
BshFI	GGCC	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	572
BslFI	GGGAC	3 cut(s)	661, 776, 837
BslI	CCNNNNNNNGG	3 cut(s)	20, 902, 983
BsmAI	GTCTC	3 cut(s)	189, 263, 851
BsmBI	CGTCTC	2 cut(s)	189, 263
BsmFI	GGGAC	3 cut(s)	661, 776, 837
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	4 cut(s)	3, 53, 634, 966
Bsp19I	CCATGG	1 cut(s)	455
BspACI	CCGC	4 cut(s)	202, 245, 288, 452
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	684, 858
BspLI	GGNNCC	2 cut(s)	378, 677
BspPI	GGATC	2 cut(s)	48, 961
BspQI	GCTCTTC	2 cut(s)	792, 825
BsrFI	RCCGGY	1 cut(s)	571
BsrI	ACTGG	3 cut(s)	325, 560, 722
BssAI	RCCGGY	1 cut(s)	571
BssECI	CCNNGG	5 cut(s)	19, 310, 347, 455, 680
BssMI	GATC	4 cut(s)	3, 53, 634, 966
BssT1I	CCWWGG	4 cut(s)	19, 310, 455, 680
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	4 cut(s)	124, 226, 426, 712
Bst6I	CTCTTC	3 cut(s)	792, 825, 849
BstBAI	YACGTR	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	997
BstDEI	CTNAG	2 cut(s)	671, 866
BstDSI	CCRYGG	2 cut(s)	347, 455
BstENI	CCTNNNNNAGG	1 cut(s)	981
BstF5I	GGATG	6 cut(s)	175, 253, 297, 321, 787, 994
BstKTI	GATC	4 cut(s)	6, 56, 637, 969
BstMAI	GTCTC	3 cut(s)	189, 263, 851
BstMBI	GATC	4 cut(s)	3, 53, 634, 966
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 273, 352, 572
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	959
BstSCI	CCNGG	1 cut(s)	186
BstSNI	TACGTA	1 cut(s)	134
BstV1I	GCAGC	4 cut(s)	47, 254, 330, 979
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	44
BtgI	CCRYGG	2 cut(s)	347, 455
BtsCI	GGATG	6 cut(s)	175, 253, 297, 321, 787, 994
BtsIMutI	CAGTG	2 cut(s)	567, 708
Cac8I	GCNNGC	1 cut(s)	997
CaiI	CAGNNNCTG	1 cut(s)	566
Cfr10I	RCCGGY	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	675
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	3 cut(s)	456, 476, 956
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	2 cut(s)	671, 866
DpnI	GATC	4 cut(s)	5, 55, 636, 968
DpnII	GATC	4 cut(s)	3, 53, 634, 966
DraI	TTTAAA	1 cut(s)	900
DriI	GACNNNNNGTC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	3 cut(s)	792, 825, 849
Eam1105I	GACNNNNNGTC	1 cut(s)	202
EarI	CTCTTC	3 cut(s)	792, 825, 849
EciI	GGCGGA	1 cut(s)	260
Eco105I	TACGTA	1 cut(s)	134
Eco130I	CCWWGG	4 cut(s)	19, 310, 455, 680
Eco24I	GRGCYC	1 cut(s)	648
Eco47I	GGWCC	1 cut(s)	675
EcoNI	CCTNNNNNAGG	1 cut(s)	981
EcoO109I	RGGNCCY	1 cut(s)	675
EcoRI	GAATTC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	4 cut(s)	19, 310, 455, 680
EcoT22I	ATGCAT	1 cut(s)	957
EcoT38I	GRGCYC	1 cut(s)	648
ErhI	CCWWGG	4 cut(s)	19, 310, 455, 680
Esp3I	CGTCTC	2 cut(s)	189, 263
FaeI	CATG	3 cut(s)	459, 479, 959
FalI	AAGNNNNNCTT	5 cut(s)	254, 286, 831, 863, 988
FaqI	GGGAC	3 cut(s)	661, 776, 837
FatI	CATG	3 cut(s)	455, 475, 955
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	4 cut(s)	36, 268, 344, 993
FokI	GGATG	6 cut(s)	182, 260, 284, 328, 794, 1001
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	4 cut(s)	36, 268, 344, 993
FspBI	CTAG	3 cut(s)	158, 356, 827
GluI	GCNGC	4 cut(s)	36, 268, 344, 993
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	1 cut(s)	572
Hin1II	CATG	3 cut(s)	459, 479, 959
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HindIII	AAGCTT	1 cut(s)	845
HinfI	GANTC	5 cut(s)	176, 253, 359, 663, 698
HpaII	CCGG	1 cut(s)	572
HphI	GGTGA	3 cut(s)	343, 645, 711
Hpy166II	GTNNAC	3 cut(s)	131, 449, 495
Hpy188I	TCNGA	6 cut(s)	66, 434, 697, 703, 756, 867
Hpy188III	TCNNGA	5 cut(s)	262, 409, 533, 641, 1005
Hpy8I	GTNNAC	3 cut(s)	131, 449, 495
HpyAV	CCTTC	4 cut(s)	383, 929, 981, 987
HpyCH4III	ACNGT	4 cut(s)	124, 226, 426, 712
HpyCH4IV	ACGT	2 cut(s)	133, 777
HpyCH4V	TGCA	3 cut(s)	619, 955, 995
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 273, 352, 572
HpyF3I	CTNAG	2 cut(s)	671, 866
HpySE526I	ACGT	2 cut(s)	133, 777
Hsp92II	CATG	3 cut(s)	459, 479, 959
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	4 cut(s)	3, 53, 634, 966
LguI	GCTCTTC	2 cut(s)	792, 825
Lsp1109I	GCAGC	4 cut(s)	47, 254, 330, 979
LweI	GCATC	2 cut(s)	942, 979
MaeI	CTAG	3 cut(s)	158, 356, 827
MaeII	ACGT	2 cut(s)	133, 777
MaeIII	GTNAC	2 cut(s)	331, 924
MalI	GATC	4 cut(s)	5, 55, 636, 968
MboI	GATC	4 cut(s)	3, 53, 634, 966
MboII	GAAGA	8 cut(s)	146, 185, 559, 779, 809, 842, 866, 923
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	1 cut(s)	648
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	5 cut(s)	75, 463, 649, 744, 908
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	353, 707
Mox20I	TGGCCA	1 cut(s)	44
Mph1103I	ATGCAT	1 cut(s)	957
MroXI	GAANNNNTTC	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	1 cut(s)	899
MslI	CAYNNNNRTG	2 cut(s)	302, 950
Msp20I	TGGCCA	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	1 cut(s)	572
MspR9I	CCNGG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	4 cut(s)	41, 273, 352, 572
NcoI	CCATGG	1 cut(s)	455
NdeII	GATC	4 cut(s)	3, 53, 634, 966
NlaIII	CATG	3 cut(s)	459, 479, 959
NlaIV	GGNNCC	2 cut(s)	378, 677
NmuCI	GTSAC	1 cut(s)	331
NsiI	ATGCAT	1 cut(s)	957
NspI	RCATGY	1 cut(s)	959
PciSI	GCTCTTC	2 cut(s)	792, 825
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	3 cut(s)	176, 253, 663
PflFI	GACNNNGTC	1 cut(s)	710
PflMI	CCANNNNNTGG	1 cut(s)	20
PkrI	GCNGC	4 cut(s)	37, 269, 345, 994
PleI	GAGTC	2 cut(s)	353, 706
PpsI	GAGTC	2 cut(s)	353, 706
Ppu21I	YACGTR	1 cut(s)	134
PpuMI	RGGWCCY	1 cut(s)	675
Psp5II	RGGWCCY	1 cut(s)	675
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	378, 677
PspPI	GGNCC	1 cut(s)	675
PspPPI	RGGWCCY	1 cut(s)	675
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	53
PsyI	GACNNNGTC	1 cut(s)	710
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	302, 950
SapI	GCTCTTC	2 cut(s)	792, 825
SaqAI	TTAA	1 cut(s)	899
SatI	GCNGC	4 cut(s)	36, 268, 344, 993
Sau3AI	GATC	4 cut(s)	3, 53, 634, 966
Sau96I	GGNCC	1 cut(s)	675
SchI	GAGTC	2 cut(s)	353, 707
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	648
SfaNI	GCATC	2 cut(s)	942, 979
SinI	GGWCC	1 cut(s)	675
SmiMI	CAYNNNNRTG	2 cut(s)	302, 950
SmlI	CTYRAG	2 cut(s)	260, 407
SmoI	CTYRAG	2 cut(s)	260, 407
SnaBI	TACGTA	1 cut(s)	134
Sse9I	AATT	5 cut(s)	75, 463, 649, 744, 908
SsiI	CCGC	4 cut(s)	202, 245, 288, 452
SspMI	CTAG	3 cut(s)	158, 356, 827
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	4 cut(s)	19, 310, 455, 680
TaaI	ACNGT	4 cut(s)	124, 226, 426, 712
TaiI	ACGT	2 cut(s)	136, 780
TaqI	TCGA	1 cut(s)	467
TasI	AATT	5 cut(s)	75, 463, 649, 744, 908
TfiI	GAWTC	3 cut(s)	176, 253, 663
Tru1I	TTAA	1 cut(s)	899
Tru9I	TTAA	1 cut(s)	899
TscAI	CASTG	2 cut(s)	567, 715
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	4 cut(s)	35, 267, 343, 992
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	3 cut(s)	186, 224, 798
TspGWI	ACGGA	3 cut(s)	169, 364, 918
TspRI	CASTG	2 cut(s)	567, 715
Tth111I	GACNNNGTC	1 cut(s)	710
Van91I	CCANNNNNTGG	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	675
XagI	CCTNNNNNAGG	1 cut(s)	981
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	1 cut(s)	959
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	3 cut(s)	158, 356, 827
Zsp2I	ATGCAT	1 cut(s)	957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.