Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001705

Physical Location & Seq

Genomic Coordinates Reverse (-)

83498184 .. 83498988

Gene Structure 805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53690

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTTTTGTCGCCAAAACCACCACAACAAGTACCTATTAGCCGGCGACGACGAAGAGTCCGTTTGGCAAGAGCGTGAGGGACACGTGAGGAACGCAAGATGGAAGGTGGAGATCAACGAGAGCGGAACAGCCATACGTCTGAAGAGCTGTTATGGAAAGTACTTAACGGCGTCAAACACGCCAGGACGACTGGGAATGAAGAGCAAGAAAGTGGTGCAGACGTTGCCAGAGACGTTGGATTCGACCGTTGAGTGGGAGCCAATCAGAGAAGGGTTCAAGGTGAGGCTGAAGATGGCAGGCCATGGCCAGTTTTTGAGAGCCAATGGGGGTGTGCCACCGTGGCGCAACTCCATCACGCATGATACTGCTCACCGGAGCGGGGCAAAGGTATGGGGGTTGTGGGATGTGGACGTGGTGGAGATAGCCATGGATCAACTTCCGGCCCCACCGAAGAAAACAAAGCCGGATGGTGATGAAACGAATGATGGTGATTCGCAACAACCGGACGCTCCGTCGGAGATTGACGTGACATGGTCGCCCCCGAAACAAAATTCAGATAGTAAAGAGAGAAAAATAGGCCGTGGAGTTGTTAGAACCAATGATCTATACTCTTGCTTTTCCATGTGTACTTGTCCAACAGTTTATGATGAGAAAGGATCAAAACAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF569

Protein Analysis

223

Amino Acids

25.09

Weight (kDa)

7.65

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF569	PF04601	5 - 134	4.8e-52	Beta-trefoil domain of unknown function (DUF569)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01311 AT3G01311 AT3G28630 AT3G28630
fragaria_vesca	FvH4_6g49410 FvH4_6g49420
malus_domestica	MD09G1045600.v1.1 MD17G1046300.v1.1
prunus_persica	Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273100_v2.0.a1
pyrus_communis	pycom111g03500
rosa_chinensis	RchiOBHm_Chr2g0169291 RchiOBHm_Chr2g0169301 RchiOBHm_Chr2g0169311
rosa_laevigata	RLG00000021852 RLG00000021853 RLG00000021854
rosa_multiflora	Rmu_co8313715.1_g000001 Rmu_ssc0000399.1_g000006 Rmu_ssc0000399.1_g000007 Rmu_ssc0000399.1_g000010
rosa_roxburghii	Rroxscaffold_2G00082250 Rroxscaffold_2G00082270 Rroxscaffold_2G00082280
rosa_rugosa	Rorug02G0538600 Rorug02G0538700 Rorug02G0538800 Rorug02G0538900 Rorug02G0539000 Rorug02G0539100 Rorug02G0539300 Rorug02G0539300
rosa_samantha	Rh2AG610400 Rh2AG610500 Rh2AG610600 Rh2BG623300 Rh2BG623600 Rh2BG623800 Rh2CG591700 Rh2CG592000 Rh2CG592100 Rh2DG634300 Rh2DG634600 Rh2DG634700
rosa_wichuraiana	Rw2G050620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	123, 378
AciI	CCGC	2 cut(s)	123, 378
AclWI	GGATC	2 cut(s)	438, 664
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	550
AcuI	CTGAAG	2 cut(s)	161, 308
AcvI	CACGTG	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	170
AfaI	GTAC	3 cut(s)	32, 161, 628
AfiI	CCNNNNNNNGG	2 cut(s)	252, 379
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	277
AhdI	GACNNNNNGTC	2 cut(s)	55, 511
AjiI	CACGTC	2 cut(s)	412, 526
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	2 cut(s)	438, 664
AoxI	GGCC	4 cut(s)	298, 304, 441, 577
ApoI	RAATTY	1 cut(s)	550
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	442
AsuHPI	GGTGA	4 cut(s)	292, 362, 482, 500
BalI	TGGCCA	1 cut(s)	306
BbrPI	CACGTG	1 cut(s)	85
BccI	CCATC	5 cut(s)	93, 286, 359, 461, 479
BceAI	ACGGC	2 cut(s)	183, 564
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	224
BglI	GCCNNNNNGGC	1 cut(s)	340
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	183
BmeRI	GACNNNNNGTC	2 cut(s)	55, 511
BmgBI	CACGTC	2 cut(s)	412, 526
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	2 cut(s)	258, 444
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	200
BsaAI	YACGTR	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	4 cut(s)	301, 338, 426, 580
BsaWI	WCCGGW	2 cut(s)	372, 502
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 379
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	195, 307
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	4 cut(s)	301, 338, 426, 580
BseGI	GGATG	2 cut(s)	409, 472
BseLI	CCNNNNNNNGG	2 cut(s)	252, 379
BseNI	ACTGG	2 cut(s)	195, 307
BsgI	GTGCAG	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	4 cut(s)	300, 306, 443, 579
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	5 cut(s)	42, 373, 440, 464, 503
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	252, 379
BsmAI	GTCTC	1 cut(s)	224
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	4 cut(s)	300, 306, 443, 579
Bsp143I	GATC	4 cut(s)	111, 430, 601, 656
Bsp19I	CCATGG	2 cut(s)	301, 426
BspACI	CCGC	2 cut(s)	123, 378
BspANI	GGCC	4 cut(s)	300, 306, 443, 579
BspLI	GGNNCC	2 cut(s)	258, 444
BspPI	GGATC	2 cut(s)	438, 664
BspQI	GCTCTTC	2 cut(s)	137, 194
BsrBI	CCGCTC	2 cut(s)	123, 378
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	195, 307
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	4 cut(s)	301, 338, 426, 580
BssMI	GATC	4 cut(s)	111, 430, 601, 656
BssNI	GRCGYC	1 cut(s)	170
BssT1I	CCWWGG	2 cut(s)	301, 426
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	3 cut(s)	247, 339, 640
Bst6I	CTCTTC	3 cut(s)	48, 137, 194
BstACI	GRCGYC	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	223
BstBAI	YACGTR	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	43, 298
BstDSI	CCRYGG	4 cut(s)	301, 338, 426, 580
BstF5I	GGATG	2 cut(s)	409, 472
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	4 cut(s)	114, 433, 604, 659
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	4 cut(s)	111, 430, 601, 656
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 340
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BsuRI	GGCC	4 cut(s)	300, 306, 443, 579
BtgI	CCRYGG	4 cut(s)	301, 338, 426, 580
BtrI	CACGTC	2 cut(s)	412, 526
BtsCI	GGATG	2 cut(s)	409, 472
Cac8I	GCNNGC	2 cut(s)	43, 298
CfoI	GCGC	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	442
CseI	GACGC	2 cut(s)	159, 515
Csp6I	GTAC	3 cut(s)	31, 160, 627
CviAII	CATG	5 cut(s)	302, 359, 427, 531, 622
CviQI	GTAC	3 cut(s)	31, 160, 627
DpnI	GATC	4 cut(s)	113, 432, 603, 658
DpnII	GATC	4 cut(s)	111, 430, 601, 656
DriI	GACNNNNNGTC	2 cut(s)	55, 511
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	3 cut(s)	48, 137, 194
Eam1105I	GACNNNNNGTC	2 cut(s)	55, 511
EarI	CTCTTC	3 cut(s)	48, 137, 194
Eco130I	CCWWGG	2 cut(s)	301, 426
Eco57I	CTGAAG	2 cut(s)	161, 308
Eco72I	CACGTG	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	301, 426
ErhI	CCWWGG	2 cut(s)	301, 426
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	5 cut(s)	305, 362, 430, 534, 625
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	5 cut(s)	301, 358, 426, 530, 621
FauI	CCCGC	1 cut(s)	371
FokI	GGATG	2 cut(s)	416, 479
GlaI	GCGC	1 cut(s)	344
HaeIII	GGCC	4 cut(s)	300, 306, 443, 579
HapII	CCGG	5 cut(s)	42, 373, 440, 464, 503
HgaI	GACGC	2 cut(s)	159, 515
HhaI	GCGC	1 cut(s)	345
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	305, 362, 430, 534, 625
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	3 cut(s)	56, 239, 491
HpaII	CCGG	5 cut(s)	42, 373, 440, 464, 503
HphI	GGTGA	4 cut(s)	292, 362, 482, 500
Hpy166II	GTNNAC	2 cut(s)	409, 627
Hpy188I	TCNGA	4 cut(s)	141, 266, 517, 556
Hpy8I	GTNNAC	2 cut(s)	409, 627
Hpy99I	CGWCG	3 cut(s)	50, 53, 517
HpyAV	CCTTC	2 cut(s)	97, 263
HpyCH4III	ACNGT	3 cut(s)	247, 339, 640
HpyCH4IV	ACGT	6 cut(s)	84, 136, 221, 233, 411, 525
HpyCH4V	TGCA	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 340
HpySE526I	ACGT	6 cut(s)	84, 136, 221, 233, 411, 525
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	5 cut(s)	305, 362, 430, 534, 625
HspAI	GCGC	1 cut(s)	343
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	4 cut(s)	111, 430, 601, 656
LguI	GCTCTTC	2 cut(s)	137, 194
LmnI	GCTCC	3 cut(s)	256, 375, 514
MaeII	ACGT	6 cut(s)	84, 136, 221, 233, 411, 525
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	4 cut(s)	113, 432, 603, 658
MbiI	CCGCTC	2 cut(s)	123, 378
MboI	GATC	4 cut(s)	111, 430, 601, 656
MboII	GAAGA	5 cut(s)	65, 154, 211, 301, 463
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	1 cut(s)	550
MluNI	TGGCCA	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	3 cut(s)	216, 495, 659
MnlI	CCTC	3 cut(s)	70, 81, 276
Mox20I	TGGCCA	1 cut(s)	306
MroNI	GCCGGC	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	2 cut(s)	164, 670
Msp20I	TGGCCA	1 cut(s)	306
MspI	CCGG	5 cut(s)	42, 373, 440, 464, 503
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	223, 340
NaeI	GCCGGC	1 cut(s)	43
NcoI	CCATGG	2 cut(s)	301, 426
NdeII	GATC	4 cut(s)	111, 430, 601, 656
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	5 cut(s)	305, 362, 430, 534, 625
NlaIV	GGNNCC	2 cut(s)	258, 444
NmuCI	GTSAC	1 cut(s)	526
PciSI	GCTCTTC	2 cut(s)	137, 194
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 239
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	239, 491
PflFI	GACNNNGTC	1 cut(s)	532
PleI	GAGTC	1 cut(s)	64
PmaCI	CACGTG	1 cut(s)	85
PmlI	CACGTG	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	181
PspCI	CACGTG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	258, 444
PspPI	GGNCC	1 cut(s)	442
PsyI	GACNNNGTC	1 cut(s)	532
RsaI	GTAC	3 cut(s)	32, 161, 628
RsaNI	GTAC	3 cut(s)	31, 160, 627
SapI	GCTCTTC	2 cut(s)	137, 194
SaqAI	TTAA	2 cut(s)	164, 670
Sau3AI	GATC	4 cut(s)	111, 430, 601, 656
Sau96I	GGNCC	1 cut(s)	442
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	183
Sse9I	AATT	1 cut(s)	550
SsiI	CCGC	2 cut(s)	123, 378
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	2 cut(s)	301, 426
TaaI	ACNGT	3 cut(s)	247, 339, 640
TaiI	ACGT	6 cut(s)	87, 139, 224, 236, 414, 528
TaqI	TCGA	1 cut(s)	242
TasI	AATT	1 cut(s)	550
TatI	WGTACW	2 cut(s)	159, 626
TfiI	GAWTC	2 cut(s)	239, 491
Tru1I	TTAA	2 cut(s)	164, 670
Tru9I	TTAA	2 cut(s)	164, 670
TseFI	GTSAC	1 cut(s)	526
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	2 cut(s)	212, 489
TspGWI	ACGGA	2 cut(s)	49, 501
Tth111I	GACNNNGTC	1 cut(s)	532
XapI	RAATTY	1 cut(s)	550
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.