Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001705

Physical Location & Seq

Genomic Coordinates Reverse (-)

78815387 .. 78816736

Gene Structure 1350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021853

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAATTTTTCAGAAATGCCAAAGTGGTACGGTTACGAAGCCACCATGACAAATATCTATCAGCAAATGAAGATGGAGAGACTGTAACACAAGATAAGGATGGAACAGCCACCAATGCTAGATGGACAGTGGAGTTTGTTAACCATGCAGACACTCTGCGTTTCAAAAGCTGTTACGGACAATACCTAAAGGCGTCAAGCTTGCCATTCAAACCAGGCTTGAGAGGCATTAACAAAGTCCTGCAAACCAAGCCAAGGAGATTGGATTCTTCTCTGGAATGGGAGCCTGTAAGTGATGGATATCAGGTCAGGCTCAGGACGCCCTACGGTCAATTCTTGTGCGCCAATGGGGGCGTTCCACCTTTGAGAAATTCGATCACGCATGACGCCCCTCAAAAAACTGTGAGGCAGGATTGGATTCTATGGGATGTAGATGTCTTAGAGATGCGTTCAGAAGATGATACAACAAATGATGATGCAGAATCTTCACAATCAGAAGAACCCAGATCTCCACCGGGAGACATTAAAATGCCTTTAGGAAAACGGGACAAAATTCGCAAAGAAGTTAAAGAAAATGTTACTCGCATTTCTGATAAAATATCTTCGATTAAATCGAAAGTAACAGTTAAGCCAGCCTTTCATTGCTGTGAGCAAGAATCTTGGTCATATGGATATCCTTATGGCAGAGGCTCTCCACTTTCACTTCCTAGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF569

Protein Analysis

239

Amino Acids

27.08

Weight (kDa)

8.57

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF569	PF04601	1 - 142	3.3e-56	Beta-trefoil domain of unknown function (DUF569)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01311 AT3G01311 AT3G28630 AT3G28630
fragaria_vesca	FvH4_6g49410 FvH4_6g49420
malus_domestica	MD09G1045600.v1.1 MD17G1046300.v1.1
prunus_persica	Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273100_v2.0.a1
pyrus_communis	pycom111g03500
rosa_chinensis	RchiOBHm_Chr2g0169291 RchiOBHm_Chr2g0169301 RchiOBHm_Chr2g0169311
rosa_laevigata	RLG00000021852 RLG00000021853 RLG00000021854
rosa_multiflora	Rmu_co8313715.1_g000001 Rmu_ssc0000399.1_g000006 Rmu_ssc0000399.1_g000007 Rmu_ssc0000399.1_g000010
rosa_roxburghii	Rroxscaffold_2G00082250 Rroxscaffold_2G00082270 Rroxscaffold_2G00082280
rosa_rugosa	Rorug02G0538600 Rorug02G0538700 Rorug02G0538800 Rorug02G0538900 Rorug02G0539000 Rorug02G0539100 Rorug02G0539300 Rorug02G0539300
rosa_samantha	Rh2AG610400 Rh2AG610500 Rh2AG610600 Rh2BG623300 Rh2BG623600 Rh2BG623800 Rh2CG591700 Rh2CG592000 Rh2CG592100 Rh2DG634300 Rh2DG634600 Rh2DG634700
rosa_wichuraiana	Rw2G050620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	5, 370, 552
AcyI	GRCGYC	3 cut(s)	194, 320, 387
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	166, 211
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	2 cut(s)	171, 201
AluI	AGCT	2 cut(s)	171, 201
Alw26I	GTCTC	2 cut(s)	74, 513
ApoI	RAATTY	3 cut(s)	5, 370, 552
AspLEI	GCGC	1 cut(s)	344
AsuC2I	CCSGG	1 cut(s)	516
BccI	CCATC	4 cut(s)	68, 95, 117, 290
BciT130I	CCWGG	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	516
BcoDI	GTCTC	2 cut(s)	74, 513
BfaI	CTAG	2 cut(s)	120, 708
BglII	AGATCT	1 cut(s)	506
Bme1390I	CCNGG	2 cut(s)	216, 516
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	2 cut(s)	216, 516
BmsI	GCATC	2 cut(s)	435, 466
Bpu10I	CCTNAGC	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	516
BsaBI	GATNNNNATC	1 cut(s)	300
BsaHI	GRCGYC	3 cut(s)	194, 320, 387
BsaJI	CCNNGG	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	640
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	2 cut(s)	106, 433
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	515
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	74, 513
BsmFI	GGGAC	1 cut(s)	560
Bsp143I	GATC	2 cut(s)	375, 506
BspCNI	CTCAG	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	640
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	2 cut(s)	375, 506
BssNI	GRCGYC	3 cut(s)	194, 320, 387
BssT1I	CCWWGG	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	6 cut(s)	33, 85, 130, 329, 403, 625
BstACI	GRCGYC	3 cut(s)	194, 320, 387
BstC8I	GCNNGC	2 cut(s)	203, 633
BstDEI	CTNAG	2 cut(s)	314, 439
BstF5I	GGATG	2 cut(s)	106, 433
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	2 cut(s)	378, 509
BstMAI	GTCTC	2 cut(s)	74, 513
BstMBI	GATC	2 cut(s)	375, 506
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 225, 250, 319
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	214, 514
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BtsCI	GGATG	2 cut(s)	106, 433
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	203, 633
CfoI	GCGC	1 cut(s)	344
CseI	GACGC	3 cut(s)	183, 328, 395
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	3 cut(s)	47, 146, 383
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	314, 439
DpnI	GATC	2 cut(s)	377, 508
DpnII	GATC	2 cut(s)	375, 506
Eco130I	CCWWGG	1 cut(s)	254
Eco32I	GATATC	2 cut(s)	302, 674
EcoRII	CCWGG	1 cut(s)	214
EcoRV	GATATC	2 cut(s)	302, 674
EcoT14I	CCWWGG	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	3 cut(s)	50, 149, 386
FaiI	YATR	7 cut(s)	48, 147, 384, 424, 667, 669, 681
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	3 cut(s)	46, 145, 382
FauNDI	CATATG	1 cut(s)	667
FokI	GGATG	2 cut(s)	113, 440
FspBI	CTAG	2 cut(s)	120, 708
GlaI	GCGC	1 cut(s)	343
HapII	CCGG	1 cut(s)	515
HgaI	GACGC	3 cut(s)	183, 328, 395
HhaI	GCGC	1 cut(s)	344
Hin1I	GRCGYC	3 cut(s)	194, 320, 387
Hin1II	CATG	3 cut(s)	50, 149, 386
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	4 cut(s)	266, 418, 482, 656
HpaI	GTTAAC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	515
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	4 cut(s)	14, 454, 496, 592
Hpy188III	TCNNGA	2 cut(s)	275, 316
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4III	ACNGT	6 cut(s)	33, 85, 130, 329, 403, 625
HpyCH4V	TGCA	3 cut(s)	149, 244, 479
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 225, 250, 319
HpyF3I	CTNAG	2 cut(s)	314, 439
Hsp92I	GRCGYC	3 cut(s)	194, 320, 387
Hsp92II	CATG	3 cut(s)	50, 149, 386
HspAI	GCGC	1 cut(s)	342
KspAI	GTTAAC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	375, 506
LmnI	GCTCC	1 cut(s)	283
LweI	GCATC	2 cut(s)	435, 466
MaeI	CTAG	2 cut(s)	120, 708
MaeIII	GTNAC	5 cut(s)	33, 85, 173, 577, 619
MalI	GATC	2 cut(s)	377, 508
MboI	GATC	2 cut(s)	375, 506
MboII	GAAGA	6 cut(s)	83, 261, 467, 477, 509, 594
MflI	RGATCY	1 cut(s)	506
MluCI	AATT	4 cut(s)	5, 332, 370, 552
MnlI	CCTC	4 cut(s)	218, 399, 402, 680
MseI	TTAA	6 cut(s)	141, 231, 525, 567, 609, 627
MslI	CAYNNNNRTG	2 cut(s)	527, 645
MspI	CCGG	1 cut(s)	515
MspR9I	CCNGG	2 cut(s)	216, 516
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	4 cut(s)	116, 225, 250, 319
NciI	CCSGG	1 cut(s)	516
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	2 cut(s)	375, 506
NlaIII	CATG	3 cut(s)	50, 149, 386
NlaIV	GGNNCC	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	611
PfeI	GAWTC	4 cut(s)	266, 418, 482, 656
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	506
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	2 cut(s)	527, 645
SaqAI	TTAA	6 cut(s)	141, 231, 525, 567, 609, 627
Sau3AI	GATC	2 cut(s)	375, 506
ScrFI	CCNGG	2 cut(s)	216, 516
SetI	ASST	5 cut(s)	173, 189, 203, 309, 364
SfaNI	GCATC	2 cut(s)	435, 466
SmiMI	CAYNNNNRTG	2 cut(s)	527, 645
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	4 cut(s)	5, 332, 370, 552
SspMI	CTAG	2 cut(s)	120, 708
StyD4I	CCNGG	2 cut(s)	214, 514
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	6 cut(s)	33, 85, 130, 329, 403, 625
TaqI	TCGA	3 cut(s)	374, 605, 614
TasI	AATT	4 cut(s)	5, 332, 370, 552
TfiI	GAWTC	4 cut(s)	266, 418, 482, 656
Tru1I	TTAA	6 cut(s)	141, 231, 525, 567, 609, 627
Tru9I	TTAA	6 cut(s)	141, 231, 525, 567, 609, 627
TscAI	CASTG	1 cut(s)	135
TspDTI	ATGAA	2 cut(s)	84, 629
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	135
XapI	RAATTY	3 cut(s)	5, 370, 552
XspI	CTAG	2 cut(s)	120, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.