Prupe.3G273000_v2.0.a1

Domain of unknown function (DUF569)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001705
Physical Location & Seq
Reverse (-)
25288091 .. 25290260
2170 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G273000.4

Sequence Viewer

Length: 939 bp
ATGGAGTTGTTCAAAACAGCCAGAGTGGTACGCTTACGAAGCCACCACGACAAATATCTATTAGCAGACGACGATCATGAGTCGGTATGCCAAGATCGGGATGGAACGGTGAGGAATGCGAGATGGACCGTGGAGTTTGTCAAAAATTCAAACACTTTACGTTTCAAAAGCTGTTATGGCAAGTATTTGACAGCCGCCAACATGCCGTTCAGGCTAGGATTGAGAGGCAAGAAAGTCCTACAAACCCTGCCAAAGAGATTGGATTCTTCTCTAGAATGGGAGCCTATAAGAGAGGGATGTCAGGTCAGGCTCAAGACTCCCTACGGCCAATTCTTGCGGGCAAATGGGGGTGTGCCGCCTTGGAGAAACTCTATCACCCATGATGTGCCTCATAGAACTGCAAGCCAGGACTGGGTTCTGTGGGATATAGATGTTATAGAGTTTCGGCCTGAATCTCCGAAACCTCGGCCTGAATCTCCAGAACGCCAGCCTGAATCTCCAGAACGTAGACCAGTGGCTCTACCCCCGCCCCCTCCACCACCTGAACTGCTTGCAGAACCTACAGAACCAACATCTCCATCCAAGATTGAGCTTAGGTCGCCACGAACTTCCAAAGAAGAGTCAAGTGAGTCATTCAATCATGGTTCTCCGATGAAAGATGCAGGGAGAATGATCCACTATCATGTGGCTAATGATAAAGGAGATGTCAAGGATTCAGCTGAAGAGTTTTCCTTCTCCTTAAAGGGTAGCGAGGTAGAGGGGTTGAAGAAGAAGTTGAAGGAAGAGACCGGGCTAGAGGAAATTGTTGTGTGTTCTCGTAATCCACTGAATGGGAAACTGTATCCCATTCGTTTACATCTTCCTCCAAACAACCATGATATGCATGTTGTTGTGGTTCCCTCTTCATCTGAAGCAGGAAGTGACTTGGGACTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF569

Protein Analysis

313

Amino Acids

35.37

Weight (kDa)

7.19

Isoelectric Point (pI)

66.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 830
AccI GTMKAC 1 cut(s) 508
AciI CCGC 4 cut(s) 195, 337, 356, 527
AclWI GGATC 1 cut(s) 667
AcoI YGGCCR 1 cut(s) 325
AcsI RAATTY 1 cut(s) 145
AcuI CTGAAG 2 cut(s) 741, 930
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 3 cut(s) 97, 412, 830
AgsI TTSAA 6 cut(s) 13, 150, 166, 637, 766, 778
AjnI CCWGG 1 cut(s) 405
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 3 cut(s) 171, 592, 719
AluI AGCT 3 cut(s) 171, 592, 719
Alw26I GTCTC 1 cut(s) 779
AlwI GGATC 1 cut(s) 667
AoxI GGCC 3 cut(s) 325, 446, 467
ApoI RAATTY 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 126
AsuC2I CCSGG 1 cut(s) 790
AsuHPI GGTGA 2 cut(s) 121, 367
AvaII GGWCC 1 cut(s) 126
BccI CCATC 3 cut(s) 95, 117, 586
BceAI ACGGC 2 cut(s) 190, 340
BciT130I CCWGG 1 cut(s) 407
BciVI GTATCC 1 cut(s) 852
BcnI CCSGG 1 cut(s) 790
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 3 cut(s) 215, 272, 794
BfmI CTRYAG 1 cut(s) 561
BfuI GTATCC 1 cut(s) 852
BglI GCCNNNNNGGC 1 cut(s) 211
BisI GCNGC 2 cut(s) 195, 356
BlsI GCNGC 2 cut(s) 196, 357
Bme1390I CCNGG 2 cut(s) 407, 790
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 2 cut(s) 282, 897
BmrFI CCNGG 2 cut(s) 407, 790
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 1 cut(s) 649
BmuI ACTGGG 1 cut(s) 421
BpmI CTGGAG 2 cut(s) 462, 483
Bpu10I CCTNAGC 1 cut(s) 593
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 790
BsaI GGTCTC 1 cut(s) 779
BsaJI CCNNGG 3 cut(s) 129, 359, 464
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 412, 830
Bse1I ACTGG 3 cut(s) 416, 512, 936
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 3 cut(s) 129, 359, 464
BseGI GGATG 3 cut(s) 106, 302, 578
BseLI CCNNNNNNNGG 3 cut(s) 97, 412, 830
BseNI ACTGG 3 cut(s) 416, 512, 936
BshFI GGCC 3 cut(s) 327, 448, 469
BsiSI CCGG 1 cut(s) 789
BslI CCNNNNNNNGG 3 cut(s) 97, 412, 830
BsmAI GTCTC 1 cut(s) 779
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 3 cut(s) 327, 448, 469
Bso31I GGTCTC 1 cut(s) 779
Bsp143I GATC 3 cut(s) 73, 94, 672
BspACI CCGC 4 cut(s) 195, 337, 356, 527
BspANI GGCC 3 cut(s) 327, 448, 469
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 282, 897
BspPI GGATC 1 cut(s) 667
BspTNI GGTCTC 1 cut(s) 779
BsrI ACTGG 3 cut(s) 416, 512, 936
BssECI CCNNGG 3 cut(s) 129, 359, 464
BssMI GATC 3 cut(s) 73, 94, 672
BssT1I CCWWGG 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 3 cut(s) 109, 130, 840
Bst6I CTCTTC 4 cut(s) 612, 717, 777, 907
BstC8I GCNNGC 4 cut(s) 339, 403, 488, 552
BstDEI CTNAG 1 cut(s) 593
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 3 cut(s) 106, 302, 578
BstKTI GATC 3 cut(s) 76, 97, 675
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 3 cut(s) 73, 94, 672
BstMWI GCNNNNNNNGC 4 cut(s) 39, 177, 211, 598
BstNI CCWGG 1 cut(s) 407
BstNSI RCATGY 2 cut(s) 205, 887
BstSCI CCNGG 2 cut(s) 405, 788
BstSFI CTRYAG 1 cut(s) 561
BsuI GTATCC 1 cut(s) 852
BsuRI GGCC 3 cut(s) 327, 448, 469
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 3 cut(s) 106, 302, 578
BtsIMutI CAGTG 2 cut(s) 519, 824
Cac8I GCNNGC 4 cut(s) 339, 403, 488, 552
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 29
CviAII CATG 7 cut(s) 77, 202, 380, 641, 683, 875, 884
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 1 cut(s) 593
DpnI GATC 3 cut(s) 75, 96, 674
DpnII GATC 3 cut(s) 73, 94, 672
EaeI YGGCCR 1 cut(s) 325
Eam1104I CTCTTC 4 cut(s) 612, 717, 777, 907
EarI CTCTTC 4 cut(s) 612, 717, 777, 907
Eco130I CCWWGG 1 cut(s) 359
Eco31I GGTCTC 1 cut(s) 779
Eco47I GGWCC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 741, 930
EcoRII CCWGG 1 cut(s) 405
EcoT14I CCWWGG 1 cut(s) 359
EcoT22I ATGCAT 1 cut(s) 885
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 7 cut(s) 80, 205, 383, 644, 686, 878, 887
FatI CATG 7 cut(s) 76, 201, 379, 640, 682, 874, 883
FauI CCCGC 2 cut(s) 330, 534
FblI GTMKAC 1 cut(s) 508
Fnu4HI GCNGC 2 cut(s) 195, 356
FokI GGATG 3 cut(s) 113, 309, 565
Fsp4HI GCNGC 2 cut(s) 195, 356
FspBI CTAG 3 cut(s) 215, 272, 794
GluI GCNGC 2 cut(s) 195, 356
GsuI CTGGAG 2 cut(s) 462, 483
HaeIII GGCC 3 cut(s) 327, 448, 469
HapII CCGG 1 cut(s) 789
Hin1II CATG 7 cut(s) 80, 205, 383, 644, 686, 878, 887
HinfI GANTC 9 cut(s) 80, 263, 316, 452, 473, 494, 620, 629, 713
HpaII CCGG 1 cut(s) 789
HphI GGTGA 2 cut(s) 121, 367
Hpy166II GTNNAC 2 cut(s) 509, 854
Hpy188I TCNGA 3 cut(s) 459, 651, 910
Hpy188III TCNNGA 6 cut(s) 77, 98, 272, 313, 479, 500
Hpy8I GTNNAC 2 cut(s) 509, 854
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 2 cut(s) 742, 772
HpyCH4III ACNGT 3 cut(s) 109, 130, 840
HpyCH4IV ACGT 2 cut(s) 160, 505
HpyCH4V TGCA 4 cut(s) 401, 554, 662, 883
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 177, 211, 598
HpyF3I CTNAG 1 cut(s) 593
HpySE526I ACGT 2 cut(s) 160, 505
Hsp92II CATG 7 cut(s) 80, 205, 383, 644, 686, 878, 887
Kzo9I GATC 3 cut(s) 73, 94, 672
LmnI GCTCC 1 cut(s) 280
LweI GCATC 1 cut(s) 649
MaeI CTAG 3 cut(s) 215, 272, 794
MaeII ACGT 2 cut(s) 160, 505
MaeIII GTNAC 1 cut(s) 920
MalI GATC 3 cut(s) 75, 96, 674
MboI GATC 3 cut(s) 73, 94, 672
MboII GAAGA 8 cut(s) 258, 629, 734, 778, 781, 794, 851, 894
MluCI AATT 3 cut(s) 145, 329, 801
MlyI GAGTC 4 cut(s) 89, 310, 629, 638
Mph1103I ATGCAT 1 cut(s) 885
MseI TTAA 1 cut(s) 740
MslI CAYNNNNRTG 1 cut(s) 681
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 1 cut(s) 789
MspR9I CCNGG 2 cut(s) 407, 790
Mva1269I GAATGC 1 cut(s) 121
MvaI CCWGG 1 cut(s) 407
MwoI GCNNNNNNNGC 4 cut(s) 39, 177, 211, 598
NciI CCSGG 1 cut(s) 790
NdeII GATC 3 cut(s) 73, 94, 672
NlaIII CATG 7 cut(s) 80, 205, 383, 644, 686, 878, 887
NlaIV GGNNCC 2 cut(s) 282, 897
NmeAIII GCCGAG 1 cut(s) 445
NmuCI GTSAC 1 cut(s) 920
NsiI ATGCAT 1 cut(s) 885
NspI RCATGY 2 cut(s) 205, 887
PagI TCATGA 1 cut(s) 76
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 5 cut(s) 263, 452, 473, 494, 713
PflMI CCANNNNNTGG 1 cut(s) 830
PkrI GCNGC 2 cut(s) 196, 357
PleI GAGTC 4 cut(s) 88, 310, 628, 637
PpsI GAGTC 4 cut(s) 88, 310, 628, 637
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 2 cut(s) 282, 897
PspPI GGNCC 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 681
SaqAI TTAA 1 cut(s) 740
SatI GCNGC 2 cut(s) 195, 356
Sau3AI GATC 3 cut(s) 73, 94, 672
Sau96I GGNCC 1 cut(s) 126
SchI GAGTC 4 cut(s) 89, 310, 629, 638
ScrFI CCNGG 2 cut(s) 407, 790
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 1 cut(s) 561
SinI GGWCC 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 3 cut(s) 145, 329, 801
SsiI CCGC 4 cut(s) 195, 337, 356, 527
SspMI CTAG 3 cut(s) 215, 272, 794
StyD4I CCNGG 2 cut(s) 405, 788
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 3 cut(s) 109, 130, 840
TaiI ACGT 2 cut(s) 163, 508
TasI AATT 3 cut(s) 145, 329, 801
TauI GCSGC 2 cut(s) 197, 358
TfiI GAWTC 5 cut(s) 263, 452, 473, 494, 713
Tru1I TTAA 1 cut(s) 740
Tru9I TTAA 1 cut(s) 740
TscAI CASTG 2 cut(s) 519, 831
TseFI GTSAC 1 cut(s) 920
Tsp45I GTSAC 1 cut(s) 920
TspDTI ATGAA 2 cut(s) 668, 894
TspRI CASTG 2 cut(s) 519, 831
Van91I CCANNNNNTGG 1 cut(s) 830
VpaK11BI GGWCC 1 cut(s) 126
XapI RAATTY 1 cut(s) 145
XbaI TCTAGA 1 cut(s) 271
XceI RCATGY 2 cut(s) 205, 887
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 508
XspI CTAG 3 cut(s) 215, 272, 794
Zsp2I ATGCAT 1 cut(s) 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.