Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8313715.1

Orthogroup ID

OG0001705

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 611

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8313715.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 610 bp

atggagtttttcaaaaaagccaaggtcgtacgtttccggagccaccacaacaagtacctattagccggcgacgacgaagagtccgtttggcaagagcgtgagggacacgtgaggaacgcaagatggaaggtggagatcaacgagagcggaacagccatacgtctgaagagctgttatggaaagtacttaacggcgtcaaacacgccaggacgactgggaatgaagagcaagaaagtggtgcagacgttgccagagacgttggattcgaccgttgagtgggagccaatcagagaagggttcaaggtgaggctgaagatggcaggccatggccagtttttgagagccaatgggggtgtgccaccgtggcgcaactccatcacgcatgatactgctcaccggagcggggcaaaggtatgggggttgtgggatgtggacgtggtggagatagccatggatcaacttccggccccaccgaagaaaacaaagccggatggtgatgaaacgaatgatggtgattcgcaacaaccggacgctccgtcggagattgacatgacatggtcgcccccgaaacaaaattcagatagtaaagagagaaaaataggccgtggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF569

Protein Analysis

203

Amino Acids

22.95

Weight (kDa)

9.1

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01311 AT3G01311 AT3G28630 AT3G28630
fragaria_vesca	FvH4_6g49410 FvH4_6g49420
malus_domestica	MD09G1045600.v1.1 MD17G1046300.v1.1
prunus_persica	Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273100_v2.0.a1
pyrus_communis	pycom111g03500
rosa_chinensis	RchiOBHm_Chr2g0169291 RchiOBHm_Chr2g0169301 RchiOBHm_Chr2g0169311
rosa_laevigata	RLG00000021852 RLG00000021853 RLG00000021854
rosa_multiflora	Rmu_co8313715.1_g000001 Rmu_ssc0000399.1_g000006 Rmu_ssc0000399.1_g000007 Rmu_ssc0000399.1_g000010
rosa_roxburghii	Rroxscaffold_2G00082250 Rroxscaffold_2G00082270 Rroxscaffold_2G00082280
rosa_rugosa	Rorug02G0538600 Rorug02G0538700 Rorug02G0538800 Rorug02G0538900 Rorug02G0539000 Rorug02G0539100 Rorug02G0539300 Rorug02G0539300
rosa_samantha	Rh2AG610400 Rh2AG610500 Rh2AG610600 Rh2BG623300 Rh2BG623600 Rh2BG623800 Rh2CG591700 Rh2CG592000 Rh2CG592100 Rh2DG634300 Rh2DG634600 Rh2DG634700
rosa_wichuraiana	Rw2G050620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	147, 402
AccIII	TCCGGA	1 cut(s)	36
AciI	CCGC	2 cut(s)	147, 402
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	574
AcuI	CTGAAG	2 cut(s)	185, 332
AcvI	CACGTG	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	3 cut(s)	30, 56, 185
AfiI	CCNNNNNNNGG	2 cut(s)	276, 403
AflIII	ACRYGT	1 cut(s)	106
AgsI	TTSAA	2 cut(s)	13, 301
AhdI	GACNNNNNGTC	2 cut(s)	79, 535
AjiI	CACGTC	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	1 cut(s)	171
AluI	AGCT	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	462
Aor13HI	TCCGGA	1 cut(s)	36
AoxI	GGCC	4 cut(s)	322, 328, 465, 601
ApoI	RAATTY	1 cut(s)	574
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	4 cut(s)	316, 386, 506, 524
BalI	TGGCCA	1 cut(s)	330
BbrPI	CACGTG	1 cut(s)	109
BccI	CCATC	5 cut(s)	117, 310, 383, 485, 503
BceAI	ACGGC	2 cut(s)	207, 588
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	248
BglI	GCCNNNNNGGC	1 cut(s)	364
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	207
BmeRI	GACNNNNNGTC	2 cut(s)	79, 535
BmgBI	CACGTC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	3 cut(s)	41, 282, 468
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	224
BmuI	ACTGGG	1 cut(s)	224
BsaAI	YACGTR	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	5 cut(s)	21, 325, 362, 450, 604
BsaWI	WCCGGW	3 cut(s)	36, 396, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 403
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	219, 331
BseAI	TCCGGA	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	5 cut(s)	21, 325, 362, 450, 604
BseGI	GGATG	2 cut(s)	433, 496
BseLI	CCNNNNNNNGG	2 cut(s)	276, 403
BseNI	ACTGG	2 cut(s)	219, 331
BsgI	GTGCAG	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	4 cut(s)	324, 330, 467, 603
BsiEI	CGRYCG	1 cut(s)	270
BsiSI	CCGG	6 cut(s)	37, 66, 397, 464, 488, 527
BsiWI	CGTACG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	276, 403
BsmAI	GTCTC	1 cut(s)	248
BsmBI	CGTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	4 cut(s)	324, 330, 467, 603
Bsp13I	TCCGGA	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	135, 454
Bsp19I	CCATGG	2 cut(s)	325, 450
BspACI	CCGC	2 cut(s)	147, 402
BspANI	GGCC	4 cut(s)	324, 330, 467, 603
BspEI	TCCGGA	1 cut(s)	36
BspLI	GGNNCC	3 cut(s)	41, 282, 468
BspPI	GGATC	1 cut(s)	462
BspQI	GCTCTTC	2 cut(s)	161, 218
BsrBI	CCGCTC	2 cut(s)	147, 402
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	219, 331
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	5 cut(s)	21, 325, 362, 450, 604
BssMI	GATC	2 cut(s)	135, 454
BssNI	GRCGYC	1 cut(s)	194
BssT1I	CCWWGG	3 cut(s)	21, 325, 450
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	271, 363
Bst6I	CTCTTC	3 cut(s)	72, 161, 218
BstACI	GRCGYC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	67, 322
BstDSI	CCRYGG	4 cut(s)	325, 362, 450, 604
BstF5I	GGATG	2 cut(s)	433, 496
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	2 cut(s)	138, 457
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	2 cut(s)	135, 454
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 364
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BsuRI	GGCC	4 cut(s)	324, 330, 467, 603
BtgI	CCRYGG	4 cut(s)	325, 362, 450, 604
BtrI	CACGTC	1 cut(s)	436
BtsCI	GGATG	2 cut(s)	433, 496
Cac8I	GCNNGC	2 cut(s)	67, 322
CfoI	GCGC	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	466
CseI	GACGC	2 cut(s)	183, 539
Csp6I	GTAC	3 cut(s)	29, 55, 184
CviAII	CATG	5 cut(s)	326, 383, 451, 550, 555
CviQI	GTAC	3 cut(s)	29, 55, 184
DpnI	GATC	2 cut(s)	137, 456
DpnII	GATC	2 cut(s)	135, 454
DriI	GACNNNNNGTC	2 cut(s)	79, 535
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	3 cut(s)	72, 161, 218
Eam1105I	GACNNNNNGTC	2 cut(s)	79, 535
EarI	CTCTTC	3 cut(s)	72, 161, 218
Eco130I	CCWWGG	3 cut(s)	21, 325, 450
Eco57I	CTGAAG	2 cut(s)	185, 332
Eco72I	CACGTG	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	3 cut(s)	21, 325, 450
ErhI	CCWWGG	3 cut(s)	21, 325, 450
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	5 cut(s)	329, 386, 454, 553, 558
FaiI	YATR	8 cut(s)	158, 177, 327, 384, 415, 452, 551, 556
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	5 cut(s)	325, 382, 450, 549, 554
FauI	CCCGC	1 cut(s)	395
FokI	GGATG	2 cut(s)	440, 503
GlaI	GCGC	1 cut(s)	368
HaeIII	GGCC	4 cut(s)	324, 330, 467, 603
HapII	CCGG	6 cut(s)	37, 66, 397, 464, 488, 527
HgaI	GACGC	2 cut(s)	183, 539
HhaI	GCGC	1 cut(s)	369
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	5 cut(s)	329, 386, 454, 553, 558
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	3 cut(s)	80, 263, 515
HpaII	CCGG	6 cut(s)	37, 66, 397, 464, 488, 527
HphI	GGTGA	4 cut(s)	316, 386, 506, 524
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	4 cut(s)	165, 290, 541, 580
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	433
Hpy99I	CGWCG	3 cut(s)	74, 77, 541
HpyAV	CCTTC	2 cut(s)	121, 287
HpyCH4III	ACNGT	2 cut(s)	271, 363
HpyCH4IV	ACGT	6 cut(s)	31, 108, 160, 245, 257, 435
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 364
HpySE526I	ACGT	6 cut(s)	31, 108, 160, 245, 257, 435
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	5 cut(s)	329, 386, 454, 553, 558
HspAI	GCGC	1 cut(s)	367
Kpn2I	TCCGGA	1 cut(s)	36
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	135, 454
LguI	GCTCTTC	2 cut(s)	161, 218
LmnI	GCTCC	4 cut(s)	39, 280, 399, 538
MaeII	ACGT	6 cut(s)	31, 108, 160, 245, 257, 435
MalI	GATC	2 cut(s)	137, 456
MbiI	CCGCTC	2 cut(s)	147, 402
MboI	GATC	2 cut(s)	135, 454
MboII	GAAGA	5 cut(s)	89, 178, 235, 325, 487
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	1 cut(s)	574
MluNI	TGGCCA	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	240, 519
MnlI	CCTC	3 cut(s)	94, 105, 300
Mox20I	TGGCCA	1 cut(s)	330
MroI	TCCGGA	1 cut(s)	36
MroNI	GCCGGC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	330
MspI	CCGG	6 cut(s)	37, 66, 397, 464, 488, 527
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	247, 364
NaeI	GCCGGC	1 cut(s)	67
NcoI	CCATGG	2 cut(s)	325, 450
NdeII	GATC	2 cut(s)	135, 454
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	5 cut(s)	329, 386, 454, 553, 558
NlaIV	GGNNCC	3 cut(s)	41, 282, 468
PciSI	GCTCTTC	2 cut(s)	161, 218
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 263
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	263, 515
Pfl23II	CGTACG	1 cut(s)	28
PflFI	GACNNNGTC	1 cut(s)	556
PleI	GAGTC	1 cut(s)	88
PmaCI	CACGTG	1 cut(s)	109
PmlI	CACGTG	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	88
Ppu21I	YACGTR	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	205
PspCI	CACGTG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	205
PspLI	CGTACG	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	41, 282, 468
PspPI	GGNCC	1 cut(s)	466
PsyI	GACNNNGTC	1 cut(s)	556
RsaI	GTAC	3 cut(s)	30, 56, 185
RsaNI	GTAC	3 cut(s)	29, 55, 184
SapI	GCTCTTC	2 cut(s)	161, 218
SaqAI	TTAA	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	135, 454
Sau96I	GGNCC	1 cut(s)	466
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	207
Sse9I	AATT	1 cut(s)	574
SsiI	CCGC	2 cut(s)	147, 402
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	3 cut(s)	21, 325, 450
TaaI	ACNGT	2 cut(s)	271, 363
TaiI	ACGT	6 cut(s)	34, 111, 163, 248, 260, 438
TaqI	TCGA	1 cut(s)	266
TasI	AATT	1 cut(s)	574
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	263, 515
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	236, 513
TspGWI	ACGGA	2 cut(s)	73, 525
Tth111I	GACNNNGTC	1 cut(s)	556
XapI	RAATTY	1 cut(s)	574
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.