Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001705

Physical Location & Seq

Genomic Coordinates Reverse (-)

25290734 .. 25291862

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G273100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAGTTTCTGAAGCAAGCCAAGGTGGTACGCTTCCTAAGCCACCATAACAAATACCTCTTAGCCGCTGACGATGAAGTCTCCGTTTGGCAGAACCGCGACGGCACGGTGAAGAACGCAAAGTGGACGGTGGAGTTGATCAGCCAAAATTCGAACACGTTACGATTGAAGAGCTGTTTTGGGAAATACTTAACAGCCTTAAGCACGCCATACCTTCTGGGAATCAAAAGCAAGAAGGTATTGCAAACCCTACCGAGGACATTGGATTCAATAGTGGAATGGGAGCCTGTGAGCGTGGCAGAAGGATACAAGGTGAAGCTGAAGACAGCCAACGGGCAATACTTGCGTGCAAATGGGTGTAGCTTACCGCCGTGGAAAGACTCCATCTCGCACGACAATCCTAACTGGAGAAGTACAACGAAAGATTGGATTTTATGGAATGTGGATGTTGTGGAGATTCGTCTGGATGATCAACAACAACAAGAACAACAAGAACGACAACGACAACGAGAACAAACAAATATTAATAGTGATCATAACGCTGGTAGTACTGGTGGTGATGATGATCATGATCAAACAGAGCCCGGATCTCCACTGGAGATTGATCTTACATCGCCCAAACAGAATTCACCTTCATATACGAAAAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF569

Protein Analysis

218

Amino Acids

24.81

Weight (kDa)

6.97

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01311 AT3G01311 AT3G28630 AT3G28630
fragaria_vesca	FvH4_6g49410 FvH4_6g49420
malus_domestica	MD09G1045600.v1.1 MD17G1046300.v1.1
prunus_persica	Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273000_v2.0.a1 Prupe.3G273100_v2.0.a1
pyrus_communis	pycom111g03500
rosa_chinensis	RchiOBHm_Chr2g0169291 RchiOBHm_Chr2g0169301 RchiOBHm_Chr2g0169311
rosa_laevigata	RLG00000021852 RLG00000021853 RLG00000021854
rosa_multiflora	Rmu_co8313715.1_g000001 Rmu_ssc0000399.1_g000006 Rmu_ssc0000399.1_g000007 Rmu_ssc0000399.1_g000010
rosa_roxburghii	Rroxscaffold_2G00082250 Rroxscaffold_2G00082270 Rroxscaffold_2G00082280
rosa_rugosa	Rorug02G0538600 Rorug02G0538700 Rorug02G0538800 Rorug02G0538900 Rorug02G0539000 Rorug02G0539100 Rorug02G0539300 Rorug02G0539300
rosa_samantha	Rh2AG610400 Rh2AG610500 Rh2AG610600 Rh2BG623300 Rh2BG623600 Rh2BG623800 Rh2CG591700 Rh2CG592000 Rh2CG592100 Rh2DG634300 Rh2DG634600 Rh2DG634700
rosa_wichuraiana	Rw2G050620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AccII	CGCG	1 cut(s)	99
AciI	CCGC	3 cut(s)	66, 97, 368
AclWI	GGATC	1 cut(s)	595
AcsI	RAATTY	2 cut(s)	148, 625
AcuI	CTGAAG	2 cut(s)	32, 341
AfaI	GTAC	3 cut(s)	30, 415, 550
AfiI	CCNNNNNNNGG	1 cut(s)	255
AflII	CTTAAG	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	169, 270
AluBI	AGCT	3 cut(s)	174, 319, 363
AluI	AGCT	3 cut(s)	174, 319, 363
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	595
ApoI	RAATTY	2 cut(s)	148, 625
AseI	ATTAAT	1 cut(s)	525
AsuC2I	CCSGG	1 cut(s)	585
AsuHPI	GGTGA	4 cut(s)	121, 325, 569, 621
AsuII	TTCGAA	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	329
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	2 cut(s)	118, 355
BciVI	GTATCC	1 cut(s)	299
BclI	TGATCA	5 cut(s)	138, 469, 532, 565, 571
BcnI	CCSGG	1 cut(s)	585
BcoDI	GTCTC	1 cut(s)	85
BfrI	CTTAAG	1 cut(s)	199
BfuI	GTATCC	1 cut(s)	299
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BmcAI	AGTACT	1 cut(s)	550
Bme1390I	CCNGG	1 cut(s)	585
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	329
BpmI	CTGGAG	2 cut(s)	427, 617
Bpu10I	CCTNAGC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	585
BsaBI	GATNNNNATC	2 cut(s)	564, 570
BsaJI	CCNNGG	3 cut(s)	21, 254, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	3 cut(s)	410, 556, 600
Bse8I	GATNNNNATC	2 cut(s)	564, 570
BseDI	CCNNGG	3 cut(s)	21, 254, 371
BseGI	GGATG	2 cut(s)	451, 472
BseJI	GATNNNNATC	2 cut(s)	564, 570
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseNI	ACTGG	3 cut(s)	410, 556, 600
Bsh1236I	CGCG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	585
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	85
Bsp119I	TTCGAA	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	7 cut(s)	138, 469, 532, 565, 571, 587, 604
BspACI	CCGC	3 cut(s)	66, 97, 368
BspFNI	CGCG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	1 cut(s)	285
BspPI	GGATC	1 cut(s)	595
BspQI	GCTCTTC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	152
BspTI	CTTAAG	1 cut(s)	199
BsrI	ACTGG	3 cut(s)	410, 556, 600
BssECI	CCNNGG	3 cut(s)	21, 254, 371
BssMI	GATC	7 cut(s)	138, 469, 532, 565, 571, 587, 604
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	2 cut(s)	109, 130
Bst6I	CTCTTC	1 cut(s)	164
BstAFI	CTTAAG	1 cut(s)	199
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	3 cut(s)	18, 206, 348
BstDEI	CTNAG	2 cut(s)	38, 61
BstDSI	CCRYGG	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	451, 472
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	7 cut(s)	141, 472, 535, 568, 574, 590, 607
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	7 cut(s)	138, 469, 532, 565, 571, 587, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 343
BstSCI	CCNGG	1 cut(s)	583
BstUI	CGCG	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BsuI	GTATCC	1 cut(s)	299
BtgI	CCRYGG	1 cut(s)	371
BtgZI	GCGATG	1 cut(s)	597
BtsCI	GGATG	2 cut(s)	451, 472
BtsIMutI	CAGTG	1 cut(s)	593
Cac8I	GCNNGC	3 cut(s)	18, 206, 348
CciI	TCATGA	1 cut(s)	568
Csp6I	GTAC	3 cut(s)	29, 414, 549
CviAII	CATG	1 cut(s)	569
CviQI	GTAC	3 cut(s)	29, 414, 549
DdeI	CTNAG	2 cut(s)	38, 61
DpnI	GATC	7 cut(s)	140, 471, 534, 567, 573, 589, 606
DpnII	GATC	7 cut(s)	138, 469, 532, 565, 571, 587, 604
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	585
Eco57I	CTGAAG	2 cut(s)	32, 341
EcoRI	GAATTC	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	572
FaiI	YATR	7 cut(s)	48, 211, 436, 537, 570, 637, 639
FatI	CATG	1 cut(s)	568
FbaI	TGATCA	5 cut(s)	138, 469, 532, 565, 571
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	2 cut(s)	458, 479
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
GsuI	CTGGAG	2 cut(s)	427, 617
HapII	CCGG	1 cut(s)	585
Hin1II	CATG	1 cut(s)	572
HinfI	GANTC	4 cut(s)	222, 266, 380, 457
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	4 cut(s)	121, 325, 569, 621
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	2 cut(s)	464, 569
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	4 cut(s)	224, 229, 296, 642
HpyCH4III	ACNGT	2 cut(s)	109, 130
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	244, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 343
HpyF3I	CTNAG	2 cut(s)	38, 61
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	572
Ksp22I	TGATCA	5 cut(s)	138, 469, 532, 565, 571
Kzo9I	GATC	7 cut(s)	138, 469, 532, 565, 571, 587, 604
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	8 cut(s)	203, 300, 391, 449, 528, 537, 581, 598
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	7 cut(s)	140, 471, 534, 567, 573, 589, 606
MboI	GATC	7 cut(s)	138, 469, 532, 565, 571, 587, 604
MboII	GAAGA	3 cut(s)	124, 181, 334
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	3 cut(s)	148, 625, 649
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	2 cut(s)	68, 249
MseI	TTAA	3 cut(s)	191, 200, 525
MspA1I	CMGCKG	1 cut(s)	68
MspCI	CTTAAG	1 cut(s)	199
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	1 cut(s)	585
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	39, 343
NciI	CCSGG	1 cut(s)	585
NdeII	GATC	7 cut(s)	138, 469, 532, 565, 571, 587, 604
NlaIII	CATG	1 cut(s)	572
NlaIV	GGNNCC	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	152
PagI	TCATGA	1 cut(s)	568
PciSI	GCTCTTC	1 cut(s)	164
PfeI	GAWTC	3 cut(s)	222, 266, 457
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PshBI	ATTAAT	1 cut(s)	525
PspN4I	GGNNCC	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	587
RsaI	GTAC	3 cut(s)	30, 415, 550
RsaNI	GTAC	3 cut(s)	29, 414, 549
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	191, 200, 525
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	7 cut(s)	138, 469, 532, 565, 571, 587, 604
ScaI	AGTACT	1 cut(s)	550
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	585
SduI	GDGCHC	1 cut(s)	585
SfuI	TTCGAA	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	3 cut(s)	148, 625, 649
SsiI	CCGC	3 cut(s)	66, 97, 368
SspI	AATATT	1 cut(s)	523
StyD4I	CCNGG	1 cut(s)	583
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	109, 130
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	152
TasI	AATT	3 cut(s)	148, 625, 649
TatI	WGTACW	2 cut(s)	413, 548
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	3 cut(s)	222, 266, 457
Tru1I	TTAA	3 cut(s)	191, 200, 525
Tru9I	TTAA	3 cut(s)	191, 200, 525
TscAI	CASTG	1 cut(s)	600
TspDTI	ATGAA	2 cut(s)	90, 624
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	600
Vha464I	CTTAAG	1 cut(s)	199
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	2 cut(s)	148, 625
ZrmI	AGTACT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.