Rh2BG623800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001705
Physical Location & Seq
Reverse (-)
84560121 .. 84561356
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG623800.1

Sequence Viewer

Length: 582 bp
ATGGAGTTTTTCAAAAAAGCCAAGGTCGTACGTTTCCGGAGCCACCACAACAAGTACCTATTAGCCGGCGACGACGAAGAGTCCGTTTGGCAAGAGCGTGAGGGACACGTGAGGAACGCAAGATGGAAGGTGGAGATCAACGAGAGCGGAACAGCCATACGTCTGAAGAGCTGTTATGGAAAGTACTTAACGGCGTCAAACACGCCGGGACGACTGGGAATGAAGAGCAAGAAAGTGGTGCAGACATTGCCAGAGACGTTGGATTCGACCGTTGAGTGGGAGCCAATCAGAGAAGGGTTCAAGGTGAGGCTGAAGATGGCAGGCCATGGCCAGTTTTTGAGAGCCAATGGGGGTGTGCCACCGTGGCGCAACTCCATCACGCATGATACTGCTCACCGGAGCGCGGCAAAGGTATGGGGGTTGTGGGATGTGGACGTGGTGGAGATAGCCATGGATCAACTTCGGCCCCACCGAAGAAAACAAAGCCGGATGGTGGTGAACAGTGGCGTAGCCAAAGATCTCTCTGAGGAGGGTCAAACTTTATTAACTAACAAATTATATTCATTTCTAGTCGTCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF569

Protein Analysis

193

Amino Acids

22.1

Weight (kDa)

9.83

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF569 PF04601 1 - 142 1.5e-59 Beta-trefoil domain of unknown function (DUF569)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 147
AccII CGCG 1 cut(s) 404
AccIII TCCGGA 1 cut(s) 36
AciI CCGC 2 cut(s) 147, 404
AclWI GGATC 1 cut(s) 462
AcoI YGGCCR 1 cut(s) 328
AcuI CTGAAG 2 cut(s) 185, 332
AcvI CACGTG 1 cut(s) 109
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 3 cut(s) 30, 56, 185
AfiI CCNNNNNNNGG 3 cut(s) 276, 403, 493
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 2 cut(s) 13, 301
AhdI GACNNNNNGTC 1 cut(s) 79
AjiI CACGTC 1 cut(s) 436
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 1 cut(s) 462
Aor13HI TCCGGA 1 cut(s) 36
AoxI GGCC 3 cut(s) 322, 328, 464
ArsI GACNNNNNNTTYG 2 cut(s) 247, 279
AspLEI GCGC 2 cut(s) 369, 404
AspS9I GGNCC 1 cut(s) 465
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 3 cut(s) 316, 386, 508
BalI TGGCCA 1 cut(s) 330
BbrPI CACGTG 1 cut(s) 109
BccI CCATC 4 cut(s) 117, 310, 383, 484
BceAI ACGGC 1 cut(s) 207
BcnI CCSGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 569
BglI GCCNNNNNGGC 1 cut(s) 364
BglII AGATCT 1 cut(s) 517
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 207
BmeRI GACNNNNNGTC 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 465
BmiI GGNNCC 3 cut(s) 41, 282, 467
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 207
BsaAI YACGTR 1 cut(s) 109
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 4 cut(s) 21, 325, 362, 450
BsaWI WCCGGW 2 cut(s) 36, 396
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 403, 493
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 2 cut(s) 219, 331
Bse3DI GCAATG 1 cut(s) 245
BseAI TCCGGA 1 cut(s) 36
BseDI CCNNGG 4 cut(s) 21, 325, 362, 450
BseGI GGATG 2 cut(s) 433, 495
BseLI CCNNNNNNNGG 3 cut(s) 276, 403, 493
BseMI GCAATG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 516
BseNI ACTGG 2 cut(s) 219, 331
BseRI GAGGAG 1 cut(s) 542
BsgI GTGCAG 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 404
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 3 cut(s) 324, 330, 466
BsiEI CGRYCG 1 cut(s) 270
BsiSI CCGG 5 cut(s) 37, 66, 206, 397, 487
BsiWI CGTACG 1 cut(s) 28
BslFI GGGAC 2 cut(s) 117, 222
BslI CCNNNNNNNGG 3 cut(s) 276, 403, 493
BsmAI GTCTC 1 cut(s) 248
BsmBI CGTCTC 1 cut(s) 248
BsmFI GGGAC 2 cut(s) 117, 222
BsnI GGCC 3 cut(s) 324, 330, 466
Bsp13I TCCGGA 1 cut(s) 36
Bsp143I GATC 3 cut(s) 135, 454, 517
Bsp19I CCATGG 2 cut(s) 325, 450
BspACI CCGC 2 cut(s) 147, 404
BspANI GGCC 3 cut(s) 324, 330, 466
BspCNI CTCAG 1 cut(s) 517
BspEI TCCGGA 1 cut(s) 36
BspFNI CGCG 1 cut(s) 404
BspLI GGNNCC 3 cut(s) 41, 282, 467
BspPI GGATC 1 cut(s) 462
BspQI GCTCTTC 2 cut(s) 161, 218
BsrBI CCGCTC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 245
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 2 cut(s) 219, 331
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 4 cut(s) 21, 325, 362, 450
BssMI GATC 3 cut(s) 135, 454, 517
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 3 cut(s) 21, 325, 450
Bst4CI ACNGT 3 cut(s) 271, 363, 503
Bst6I CTCTTC 3 cut(s) 72, 161, 218
BstACI GRCGYC 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 247
BstBAI YACGTR 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 67, 322
BstDEI CTNAG 1 cut(s) 525
BstDSI CCRYGG 3 cut(s) 325, 362, 450
BstF5I GGATG 2 cut(s) 433, 495
BstFNI CGCG 1 cut(s) 404
BstHHI GCGC 2 cut(s) 369, 404
BstKTI GATC 3 cut(s) 138, 457, 520
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 3 cut(s) 135, 454, 517
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 247, 364
BstSCI CCNGG 1 cut(s) 205
BstUI CGCG 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BsuRI GGCC 3 cut(s) 324, 330, 466
BtgI CCRYGG 3 cut(s) 325, 362, 450
BtrI CACGTC 1 cut(s) 436
BtsCI GGATG 2 cut(s) 433, 495
BtsIMutI CAGTG 1 cut(s) 508
Cac8I GCNNGC 2 cut(s) 67, 322
CfoI GCGC 2 cut(s) 369, 404
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 465
CseI GACGC 1 cut(s) 183
Csp6I GTAC 3 cut(s) 29, 55, 184
CviAII CATG 3 cut(s) 326, 383, 451
CviQI GTAC 3 cut(s) 29, 55, 184
DdeI CTNAG 1 cut(s) 525
DpnI GATC 3 cut(s) 137, 456, 519
DpnII GATC 3 cut(s) 135, 454, 517
DriI GACNNNNNGTC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 3 cut(s) 72, 161, 218
Eam1105I GACNNNNNGTC 1 cut(s) 79
EarI CTCTTC 3 cut(s) 72, 161, 218
Eco130I CCWWGG 3 cut(s) 21, 325, 450
Eco57I CTGAAG 2 cut(s) 185, 332
Eco72I CACGTG 1 cut(s) 109
EcoT14I CCWWGG 3 cut(s) 21, 325, 450
ErhI CCWWGG 3 cut(s) 21, 325, 450
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 3 cut(s) 329, 386, 454
FaiI YATR 7 cut(s) 158, 177, 327, 384, 415, 452, 559
FaqI GGGAC 2 cut(s) 117, 222
FatI CATG 3 cut(s) 325, 382, 450
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 2 cut(s) 440, 502
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 1 cut(s) 569
GlaI GCGC 2 cut(s) 368, 403
GluI GCNGC 1 cut(s) 405
HaeIII GGCC 3 cut(s) 324, 330, 466
HapII CCGG 5 cut(s) 37, 66, 206, 397, 487
HgaI GACGC 1 cut(s) 183
HhaI GCGC 2 cut(s) 369, 404
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 3 cut(s) 329, 386, 454
Hin6I GCGC 2 cut(s) 367, 402
HinP1I GCGC 2 cut(s) 367, 402
HinfI GANTC 2 cut(s) 80, 263
HpaII CCGG 5 cut(s) 37, 66, 206, 397, 487
HphI GGTGA 3 cut(s) 316, 386, 508
Hpy166II GTNNAC 2 cut(s) 433, 499
Hpy188I TCNGA 3 cut(s) 165, 290, 526
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 2 cut(s) 433, 499
Hpy99I CGWCG 2 cut(s) 74, 77
HpyAV CCTTC 2 cut(s) 121, 287
HpyCH4III ACNGT 3 cut(s) 271, 363, 503
HpyCH4IV ACGT 5 cut(s) 31, 108, 160, 257, 435
HpyCH4V TGCA 1 cut(s) 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 364
HpyF3I CTNAG 1 cut(s) 525
HpySE526I ACGT 5 cut(s) 31, 108, 160, 257, 435
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 3 cut(s) 329, 386, 454
HspAI GCGC 2 cut(s) 367, 402
Kpn2I TCCGGA 1 cut(s) 36
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 3 cut(s) 135, 454, 517
LguI GCTCTTC 2 cut(s) 161, 218
LmnI GCTCC 3 cut(s) 39, 280, 399
LpnPI CCDG 9 cut(s) 50, 79, 200, 219, 264, 306, 344, 410, 500
MaeI CTAG 1 cut(s) 569
MaeII ACGT 5 cut(s) 31, 108, 160, 257, 435
MalI GATC 3 cut(s) 137, 456, 519
MbiI CCGCTC 1 cut(s) 147
MboI GATC 3 cut(s) 135, 454, 517
MboII GAAGA 5 cut(s) 89, 178, 235, 325, 486
MflI RGATCY 1 cut(s) 517
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 1 cut(s) 554
MluNI TGGCCA 1 cut(s) 330
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 5 cut(s) 94, 105, 300, 520, 523
Mox20I TGGCCA 1 cut(s) 330
MroI TCCGGA 1 cut(s) 36
MroNI GCCGGC 1 cut(s) 65
MscI TGGCCA 1 cut(s) 330
MseI TTAA 2 cut(s) 188, 545
Msp20I TGGCCA 1 cut(s) 330
MspI CCGG 5 cut(s) 37, 66, 206, 397, 487
MspR9I CCNGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 2 cut(s) 247, 364
NaeI GCCGGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 207
NcoI CCATGG 2 cut(s) 325, 450
NdeII GATC 3 cut(s) 135, 454, 517
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 3 cut(s) 329, 386, 454
NlaIV GGNNCC 3 cut(s) 41, 282, 467
PciSI GCTCTTC 2 cut(s) 161, 218
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 263, 469
PdiI GCCGGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 263
Pfl23II CGTACG 1 cut(s) 28
PkrI GCNGC 1 cut(s) 406
PleI GAGTC 1 cut(s) 88
PmaCI CACGTG 1 cut(s) 109
PmlI CACGTG 1 cut(s) 109
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 109
PspCI CACGTG 1 cut(s) 109
PspLI CGTACG 1 cut(s) 28
PspN4I GGNNCC 3 cut(s) 41, 282, 467
PspPI GGNCC 1 cut(s) 465
PsuI RGATCY 1 cut(s) 517
RsaI GTAC 3 cut(s) 30, 56, 185
RsaNI GTAC 3 cut(s) 29, 55, 184
SapI GCTCTTC 2 cut(s) 161, 218
SaqAI TTAA 2 cut(s) 188, 545
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 3 cut(s) 135, 454, 517
Sau96I GGNCC 1 cut(s) 465
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 207
Sse9I AATT 1 cut(s) 554
SsiI CCGC 2 cut(s) 147, 404
SspMI CTAG 1 cut(s) 569
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 3 cut(s) 21, 325, 450
TaaI ACNGT 3 cut(s) 271, 363, 503
TaiI ACGT 5 cut(s) 34, 111, 163, 260, 438
TaqI TCGA 1 cut(s) 266
TasI AATT 1 cut(s) 554
TatI WGTACW 1 cut(s) 183
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 188, 545
Tru9I TTAA 2 cut(s) 188, 545
TscAI CASTG 1 cut(s) 508
TspDTI ATGAA 2 cut(s) 236, 552
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 1 cut(s) 508
XspI CTAG 1 cut(s) 569
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.