Rh2AG610100

HI0933-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0007811
Physical Location & Seq
Reverse (-)
83656995 .. 83662116
5122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG610100.1

Sequence Viewer

Length: 1056 bp
ATGAGCCTCCCTTTGGCGCGCTTCGTCCTTCTCTCTAGGCTCTTCTCAGAAGCCGCAACTACCGGAAAACGTAACGGTCGTCTTATTTCAACCCTCAAGAAAAGGAAATTTACTTCAGCTGCCACCCACAGAGCTCAACACAAGGCAGGTGAAGAGGTATTGGTGGTAGTTGGAGCTGGAGCAGCTGGGGTTTATGGAGCAATTAGAGCTAAAACCCTGGCTCCTAATCTCAATGTGGTGCTCATTGAGAAAGCAAGGCCCCTAGCCAAGGTGAAAGTTTCTGGGGGAGGAAGGTGCAATGTGACAAATGGGCATTGTGTTGAAGCCATGATGTTGGCAGAAAACTATCCGAGGGGTCATAAAGAATTGAAAGGAGCGTTCTTCAACACGCACGGGCCAGTGGATACCATGACTTGGTTTTCTGATCATGGGGTGGAGCTGAAGACTGAGGATGATGGAAGGGTGTTTCCTGTCAGCAACAGTTCGTCTACGATTATTGATTGTCTCATGTCTGAATCGATGCGGTTGGGAGTTTCTCTGCAGACTGGAAAAGCTGTGATAACTGCATCTCCTACTGATGGTGGAAAATTTCTTCTAGGCATTGAAAAGCGTACACCCAGTTCTGTTGAATATGTTGATGCTGATTATCTTTTGATTGCCAGCGGTAATGGCAAGCAGGGTTACAGTCTTGCATCTCAGCTTGGTCATTCAATTGTCGATCCCGTACCAAGTCTATTTACTTTCAAGATTGAGGATCCACAGCTGGCCGACTTGTCAGGGATTACATTCCCTAAAGTCAAGGCAAAGCTGAAAACAGAGAGTGTCCAAAGGAATATACCACAGCTTACACAGGCATGTTTTATTTTGTTGTCAGCATTTCATATTTCAATAATGCATGTCTCATACAGAAAAGTATTTGGAACCGTAGGTTGGACCTGTGTTAGTCACACACTGGGGATTCAGTGGGCCAGCAATTCTTCGCTTATCTGCGTGGGGTGCCTGTGTTTTATCCCGTACAGGTTACAAAGGGACTCTTATTCTGGACTTTACACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HI0933_like

Protein Analysis

351

Amino Acids

37.97

Weight (kDa)

9.4

Isoelectric Point (pI)

32.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HI0933_like PF03486 54 - 268 1.7e-37 HI0933-like protein Rossmann domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 996
AccB7I CCANNNNNTGG 1 cut(s) 414
AccI GTMKAC 1 cut(s) 488
AccII CGCG 1 cut(s) 19
AciI CCGC 3 cut(s) 54, 523, 663
AclWI GGATC 3 cut(s) 713, 749, 762
AcoI YGGCCR 1 cut(s) 765
AcsI RAATTY 2 cut(s) 107, 587
AcuI CTGAAG 2 cut(s) 99, 461
AfaI GTAC 3 cut(s) 613, 726, 1016
AfiI CCNNNNNNNGG 5 cut(s) 13, 268, 414, 578, 930
AgsI TTSAA 9 cut(s) 90, 323, 370, 385, 605, 629, 711, 745, 888
AjnI CCWGG 1 cut(s) 216
AjuI GAANNNNNNNTTGG 2 cut(s) 913, 945
Alw21I GWGCWC 2 cut(s) 136, 243
Alw26I GTCTC 2 cut(s) 509, 904
AlwI GGATC 3 cut(s) 713, 749, 762
AoxI GGCC 4 cut(s) 257, 395, 765, 966
ApeKI GCWGC 2 cut(s) 119, 182
ApoI RAATTY 2 cut(s) 107, 587
AspLEI GCGC 2 cut(s) 19, 21
AspS9I GGNCC 4 cut(s) 258, 395, 933, 966
AsuHPI GGTGA 2 cut(s) 161, 283
AvaII GGWCC 1 cut(s) 933
BamHI GGATCC 1 cut(s) 754
BanI GGYRCC 1 cut(s) 996
BanII GRGCYC 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 449
Bbv12I GWGCWC 2 cut(s) 136, 243
BbvI GCAGC 2 cut(s) 106, 194
BccI CCATC 2 cut(s) 449, 572
BciT130I CCWGG 1 cut(s) 218
BciVI GTATCC 1 cut(s) 397
BclI TGATCA 1 cut(s) 424
BcoDI GTCTC 2 cut(s) 509, 904
BfaI CTAG 3 cut(s) 36, 263, 596
BfmI CTRYAG 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 137
BfuI GTATCC 1 cut(s) 397
BisI GCNGC 3 cut(s) 54, 120, 183
BlsI GCNGC 3 cut(s) 55, 121, 184
Bme1390I CCNGG 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 933
BmgT120I GGNCC 4 cut(s) 258, 395, 933, 966
BmiI GGNNCC 5 cut(s) 222, 260, 756, 922, 998
BmrFI CCNGG 1 cut(s) 218
BmrI ACTGGG 2 cut(s) 612, 962
BmsI GCATC 4 cut(s) 510, 575, 628, 701
BmuI ACTGGG 2 cut(s) 612, 962
BpiI GAAGAC 1 cut(s) 449
BpmI CTGGAG 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 518
BsaJI CCNNGG 3 cut(s) 216, 267, 350
BsaWI WCCGGW 1 cut(s) 62
BsaXI ACNNNNNCTCC 4 cut(s) 205, 235, 553, 583
Bsc4I CCNNNNNNNGG 5 cut(s) 13, 268, 414, 578, 930
Bse1I ACTGG 4 cut(s) 398, 550, 618, 957
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 218
BseCI ATCGAT 1 cut(s) 518
BseDI CCNNGG 3 cut(s) 216, 267, 350
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 5 cut(s) 13, 268, 414, 578, 930
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 3 cut(s) 60, 438, 710
BseNI ACTGG 4 cut(s) 398, 550, 618, 957
BsePI GCGCGC 1 cut(s) 17
BseXI GCAGC 2 cut(s) 106, 194
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 4 cut(s) 259, 397, 767, 968
BshNI GGYRCC 1 cut(s) 996
BshVI ATCGAT 1 cut(s) 518
BsiEI CGRYCG 1 cut(s) 79
BsiHKAI GWGCWC 2 cut(s) 136, 243
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 1043
BslI CCNNNNNNNGG 5 cut(s) 13, 268, 414, 578, 930
BsmAI GTCTC 2 cut(s) 509, 904
BsmFI GGGAC 1 cut(s) 1043
BsnI GGCC 4 cut(s) 259, 397, 767, 968
Bsp1286I GDGCHC 2 cut(s) 136, 243
Bsp143I GATC 3 cut(s) 424, 718, 754
BspACI CCGC 3 cut(s) 54, 523, 663
BspANI GGCC 4 cut(s) 259, 397, 767, 968
BspCNI CTCAG 3 cut(s) 59, 439, 709
BspDI ATCGAT 1 cut(s) 518
BspFNI CGCG 1 cut(s) 19
BspLI GGNNCC 5 cut(s) 222, 260, 756, 922, 998
BspMAI CTGCAG 1 cut(s) 543
BspMI ACCTGC 1 cut(s) 137
BspPI GGATC 3 cut(s) 713, 749, 762
BspQI GCTCTTC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 996
BsrDI GCAATG 1 cut(s) 304
BsrI ACTGG 4 cut(s) 398, 550, 618, 957
BssECI CCNNGG 3 cut(s) 216, 267, 350
BssHII GCGCGC 1 cut(s) 17
BssMI GATC 3 cut(s) 424, 718, 754
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 4 cut(s) 77, 482, 686, 925
Bst6I CTCTTC 2 cut(s) 47, 147
BstC8I GCNNGC 5 cut(s) 19, 661, 674, 765, 970
BstDEI CTNAG 3 cut(s) 46, 447, 696
BstENI CCTNNNNNAGG 1 cut(s) 266
BstF5I GGATG 1 cut(s) 457
BstFNI CGCG 1 cut(s) 19
BstHHI GCGC 2 cut(s) 19, 21
BstKTI GATC 3 cut(s) 427, 721, 757
BstMAI GTCTC 2 cut(s) 509, 904
BstMBI GATC 3 cut(s) 424, 718, 754
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 4 cut(s) 182, 206, 669, 996
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 2 cut(s) 858, 899
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 539
BstUI CGCG 1 cut(s) 19
BstV1I GCAGC 2 cut(s) 106, 194
BstV2I GAAGAC 1 cut(s) 449
BstX2I RGATCY 1 cut(s) 754
BstXI CCANNNNNNTGG 1 cut(s) 334
BstYI RGATCY 1 cut(s) 754
Bsu15I ATCGAT 1 cut(s) 518
BsuI GTATCC 1 cut(s) 397
BsuRI GGCC 4 cut(s) 259, 397, 767, 968
BsuTUI ATCGAT 1 cut(s) 518
BtsCI GGATG 1 cut(s) 457
BtsIMutI CAGTG 3 cut(s) 405, 950, 968
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 5 cut(s) 19, 661, 674, 765, 970
CfoI GCGC 2 cut(s) 19, 21
Cfr13I GGNCC 4 cut(s) 258, 395, 933, 966
ClaI ATCGAT 1 cut(s) 518
Csp6I GTAC 3 cut(s) 612, 725, 1015
CviAII CATG 6 cut(s) 328, 409, 428, 508, 855, 896
CviQI GTAC 3 cut(s) 612, 725, 1015
DdeI CTNAG 3 cut(s) 46, 447, 696
DpnI GATC 3 cut(s) 426, 720, 756
DpnII GATC 3 cut(s) 424, 718, 754
EaeI YGGCCR 1 cut(s) 765
Eam1104I CTCTTC 2 cut(s) 47, 147
EarI CTCTTC 2 cut(s) 47, 147
Ecl136II GAGCTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 933
Eco53kI GAGCTC 1 cut(s) 134
Eco57I CTGAAG 2 cut(s) 99, 461
EcoICRI GAGCTC 1 cut(s) 134
EcoNI CCTNNNNNAGG 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 897
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 6 cut(s) 331, 412, 431, 511, 858, 899
FalI AAGNNNNNCTT 2 cut(s) 1018, 1050
FaqI GGGAC 1 cut(s) 1043
FatI CATG 6 cut(s) 327, 408, 427, 507, 854, 895
FbaI TGATCA 1 cut(s) 424
FblI GTMKAC 1 cut(s) 488
Fnu4HI GCNGC 3 cut(s) 54, 120, 183
FokI GGATG 1 cut(s) 464
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 3 cut(s) 54, 120, 183
FspBI CTAG 3 cut(s) 36, 263, 596
GlaI GCGC 2 cut(s) 18, 20
GluI GCNGC 3 cut(s) 54, 120, 183
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 4 cut(s) 259, 397, 767, 968
HapII CCGG 1 cut(s) 63
HhaI GCGC 2 cut(s) 19, 21
Hin1II CATG 6 cut(s) 331, 412, 431, 511, 858, 899
Hin6I GCGC 2 cut(s) 17, 19
HinP1I GCGC 2 cut(s) 17, 19
HinfI GANTC 3 cut(s) 515, 958, 1031
HpaII CCGG 1 cut(s) 63
HphI GGTGA 2 cut(s) 161, 283
Hpy166II GTNNAC 2 cut(s) 489, 614
Hpy188I TCNGA 4 cut(s) 49, 351, 424, 514
Hpy188III TCNNGA 3 cut(s) 97, 745, 1041
Hpy8I GTNNAC 2 cut(s) 489, 614
HpyAV CCTTC 3 cut(s) 38, 285, 453
HpyCH4III ACNGT 4 cut(s) 77, 482, 686, 925
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 5 cut(s) 297, 541, 566, 692, 895
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 206, 669, 996
HpyF3I CTNAG 3 cut(s) 46, 447, 696
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 6 cut(s) 331, 412, 431, 511, 858, 899
HspAI GCGC 2 cut(s) 17, 19
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 3 cut(s) 424, 718, 754
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 6 cut(s) 173, 179, 197, 226, 374, 436
Lsp1109I GCAGC 2 cut(s) 106, 194
LweI GCATC 4 cut(s) 510, 575, 628, 701
MaeI CTAG 3 cut(s) 36, 263, 596
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 5 cut(s) 71, 301, 680, 944, 1020
MalI GATC 3 cut(s) 426, 720, 756
MboI GATC 3 cut(s) 424, 718, 754
MboII GAAGA 6 cut(s) 34, 164, 373, 454, 584, 969
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 1 cut(s) 754
MhlI GDGCHC 2 cut(s) 136, 243
MluCI AATT 6 cut(s) 107, 201, 365, 587, 711, 973
MlyI GAGTC 1 cut(s) 1025
MmeI TCCRAC 2 cut(s) 151, 911
MnlI CCTC 7 cut(s) 17, 104, 148, 281, 345, 442, 745
Mph1103I ATGCAT 1 cut(s) 897
MslI CAYNNNNRTG 1 cut(s) 853
MspA1I CMGCKG 4 cut(s) 119, 185, 663, 763
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 218
MunI CAATTG 1 cut(s) 711
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 19
MwoI GCNNNNNNNGC 4 cut(s) 182, 206, 669, 996
NdeII GATC 3 cut(s) 424, 718, 754
NlaIII CATG 6 cut(s) 331, 412, 431, 511, 858, 899
NlaIV GGNNCC 5 cut(s) 222, 260, 756, 922, 998
NmuCI GTSAC 2 cut(s) 301, 944
NsiI ATGCAT 1 cut(s) 897
NspI RCATGY 2 cut(s) 858, 899
PaqCI CACCTGC 1 cut(s) 137
PauI GCGCGC 1 cut(s) 17
PciSI GCTCTTC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PfeI GAWTC 2 cut(s) 515, 958
PflMI CCANNNNNTGG 1 cut(s) 414
PkrI GCNGC 3 cut(s) 55, 121, 184
PleI GAGTC 1 cut(s) 1025
PpsI GAGTC 1 cut(s) 1025
Psp124BI GAGCTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 5 cut(s) 222, 260, 756, 922, 998
PspPI GGNCC 4 cut(s) 258, 395, 933, 966
PsrI GAACNNNNNNTAC 2 cut(s) 604, 636
PstI CTGCAG 1 cut(s) 543
PsuI RGATCY 1 cut(s) 754
PteI GCGCGC 1 cut(s) 17
PvuII CAGCTG 3 cut(s) 119, 185, 763
RsaI GTAC 3 cut(s) 613, 726, 1016
RsaNI GTAC 3 cut(s) 612, 725, 1015
RseI CAYNNNNRTG 1 cut(s) 853
SacI GAGCTC 1 cut(s) 136
SapI GCTCTTC 1 cut(s) 47
SatI GCNGC 3 cut(s) 54, 120, 183
Sau3AI GATC 3 cut(s) 424, 718, 754
Sau96I GGNCC 4 cut(s) 258, 395, 933, 966
SchI GAGTC 1 cut(s) 1025
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 2 cut(s) 136, 243
SfaNI GCATC 4 cut(s) 510, 575, 628, 701
SfcI CTRYAG 1 cut(s) 539
SinI GGWCC 1 cut(s) 933
SmiMI CAYNNNNRTG 1 cut(s) 853
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 6 cut(s) 107, 201, 365, 587, 711, 973
SsiI CCGC 3 cut(s) 54, 523, 663
SspMI CTAG 3 cut(s) 36, 263, 596
SstI GAGCTC 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 4 cut(s) 77, 482, 686, 925
TaiI ACGT 1 cut(s) 73
TaqI TCGA 2 cut(s) 518, 717
TasI AATT 6 cut(s) 107, 201, 365, 587, 711, 973
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 515, 958
TscAI CASTG 3 cut(s) 405, 957, 968
TseFI GTSAC 2 cut(s) 301, 944
TseI GCWGC 2 cut(s) 119, 182
Tsp45I GTSAC 2 cut(s) 301, 944
TspDTI ATGAA 1 cut(s) 869
TspRI CASTG 3 cut(s) 405, 957, 968
Van91I CCANNNNNTGG 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 933
XagI CCTNNNNNAGG 1 cut(s) 266
XapI RAATTY 2 cut(s) 107, 587
XceI RCATGY 2 cut(s) 858, 899
XmiI GTMKAC 1 cut(s) 488
XspI CTAG 3 cut(s) 36, 263, 596
Zsp2I ATGCAT 1 cut(s) 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.