Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010411

Physical Location & Seq

Genomic Coordinates Reverse (-)

16208009 .. 16209927

Gene Structure 1919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGGAAGAAATTTTATTCGATGAGATTCTCTGCGAGATATTTACAAGACTGCCATCGTCTTCTTCTTCTTCTTCTTCCTCATCATCTTCGTTACCTTCTTTCGAATCGGTTCCTCTTGTCTCAAAACGATGGCTTCGTCTCTACAGAGCATCAAAGACTTCCATGTCCTTACAATTCAGTCCTCACGACACCTCTGTAATTACCCTTTTGCCCTCTATCCTCAACAACCATCCTTGTCTCTCTTCCCTCTCTATCTATCGCGGCGTAACCATAGGAACTACCCCAAGTCGTTCGGATGAGGAGCATCTGAAAGCTGAAACCATTTTCAGCGACGAGCTAATCTCAATCATATCTTCTTGCTGCTTCAATCTCAGAAACCTCTGTTTCTTGATCAATCCAGTTTCTTCATCTTCTTTGGTTCCTCTCTCTACTTCTTTATCTCTCACTTCTCTCTCTATCGAATTATGGAAACCACAAAACTCAGGTTTCACTTGGATTGCTCTGTTTTCATCTCTTAAAGAATTATCAATCCATGTTTGCTCAACGAGTTCTCCAGCTTTCGATTTCTATCCAAAGTCTAAACCTAACCCGGAAGTTGTAGAGTTAGGTTTGGAATCGGTTTCTTTATTTGGAATCCAACCTGATGATAATGATGTTACTTGGTTATGGAAAAGTTGCAGAAAGTTAAAGAAACTGAGTCTGAGATCTTGTGGAAGTATTGGAGAAGAAATCGGTTTGTGTTTGAAGAATCTTGAAGAGATTGAGTTAAGAACATGTAGGAGTATTGTTGATGTGGTTCTGCTTAAAGTATCAGAGATTTGTGAATCTTTAAAGTCTCTGTTGATTCATGATGGTGGAAGCAAAGATGGGTTGGTTCAGTTTATGAGCAATGCTAGATGTTATGATACTTTGGAAAGACTCGATTTACGTCTACCGATGGATTTGACCGATGATCATTTAGTCTCTCTCGCTGCGAATTTCAAGTGTTTGTCGACTCTTAGGCTTACAAGCTGTATCTTTGTGACTGGTTTTAGTCTAAAGGCATTGGCTTTAAGCTTTAGTTCGAGTCTTGAAGAGCTTTCTTTGCTTAGCTGCAACGCGATTGAACGAGAGCGTGGTTTGTTGGCGACAATAGGACAGCATTTGGGGAGGTTAAGGAAGCTAGATTTGACTCGGAACGAGTGGTTATTCGATAAAGAGGTTGTTTCGATGTTAGCTTCTTGCAATGGTTTGGTTGAGGTTGTTTTGAGAGATTGTAAGCATTTGACAGGTGCAGTGTTGGTTGCTTTGAACAAAAACTGTGTGAAGTTGAAGACTTTAGACATTTTAGGTTGTCGGTTGATTGAGCCTGATGATGTGGAGGGGTTTGTGATGAAGACACAATGTTTGAAGAAGCTTGTGGTTGAAGAGAATCAGATCACAGAAGCTATATTGAAATTGGCTTCGAGTAAGTTTATTGAAACTGTTGTGTTTGATTCTCTTGTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

496

Amino Acids

55.04

Weight (kDa)

5.65

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40470
fragaria_vesca	FvH4_6g51200 FvH4_6g51200 FvH4_6g51200 FvH4_6g51200
malus_domestica	MD09G1027100.v1.1 MD17G1027100.v1.1
prunus_persica	Prupe.3G291600_v2.0.a1
pyrus_communis	pycom111g02120 pycom17g02220
rosa_chinensis	RchiOBHm_Chr2g0172801
rosa_laevigata	RLG00000022136
rosa_multiflora	Rmu_co8170410.1_g000001 Rmu_sc0002979.1_g000011
rosa_roxburghii	Rroxscaffold_2G00079500
rosa_rugosa	Rorug02G0561800
rosa_samantha	Rh2AG639500 Rh2BG652900 Rh2CG618700 Rh2DG666600
rosa_wichuraiana	Rw2G052790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
AccI	GTMKAC	2 cut(s)	931, 992
AccII	CGCG	2 cut(s)	261, 1100
AciI	CCGC	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	9, 976
AflIII	ACRYGT	1 cut(s)	773
Alw26I	GTCTC	5 cut(s)	124, 143, 242, 840, 967
ApeKI	GCWGC	3 cut(s)	360, 971, 1092
ApoI	RAATTY	2 cut(s)	9, 976
ArsI	GACNNNNNNTTYG	2 cut(s)	1369, 1401
Asp700I	GAANNNNTTC	1 cut(s)	108
AsuC2I	CCSGG	1 cut(s)	590
AsuII	TTCGAA	1 cut(s)	102
BbsI	GAAGAC	3 cut(s)	51, 1319, 1382
BbvI	GCAGC	3 cut(s)	347, 958, 1079
BccI	CCATC	6 cut(s)	61, 123, 237, 845, 860, 931
BclI	TGATCA	2 cut(s)	390, 952
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	5 cut(s)	124, 143, 242, 840, 967
BfaI	CTAG	2 cut(s)	894, 1163
BfmI	CTRYAG	1 cut(s)	142
BglII	AGATCT	1 cut(s)	704
BisI	GCNGC	4 cut(s)	262, 361, 972, 1093
BlpI	GCTNAGC	1 cut(s)	1088
BlsI	GCNGC	4 cut(s)	263, 362, 973, 1094
Bme1390I	CCNGG	1 cut(s)	590
BmiI	GGNNCC	2 cut(s)	111, 420
BmrFI	CCNGG	1 cut(s)	590
BmsI	GCATC	2 cut(s)	158, 313
BpiI	GAAGAC	3 cut(s)	51, 1319, 1382
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
BpmI	CTGGAG	1 cut(s)	537
Bpu1102I	GCTNAGC	1 cut(s)	1088
Bpu14I	TTCGAA	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	590
BsaBI	GATNNNNATC	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bse1I	ACTGG	2 cut(s)	398, 1030
Bse3DI	GCAATG	2 cut(s)	895, 1231
Bse8I	GATNNNNATC	1 cut(s)	567
BseGI	GGATG	2 cut(s)	229, 301
BseJI	GATNNNNATC	1 cut(s)	567
BseMI	GCAATG	2 cut(s)	895, 1231
BseMII	CTCAG	4 cut(s)	385, 495, 686, 692
BseNI	ACTGG	2 cut(s)	398, 1030
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	347, 958, 1079
BsgI	GTGCAG	1 cut(s)	1293
Bsh1236I	CGCG	2 cut(s)	261, 1100
BsiSI	CCGG	1 cut(s)	590
BsmAI	GTCTC	5 cut(s)	124, 143, 242, 840, 967
BsmBI	CGTCTC	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	102
Bsp143I	GATC	4 cut(s)	390, 704, 952, 1416
Bsp1720I	GCTNAGC	1 cut(s)	1088
BspACI	CCGC	1 cut(s)	261
BspCNI	CTCAG	4 cut(s)	384, 494, 687, 693
BspFNI	CGCG	2 cut(s)	261, 1100
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	2 cut(s)	111, 420
BspQI	GCTCTTC	1 cut(s)	1068
BspT104I	TTCGAA	1 cut(s)	102
BsrDI	GCAATG	2 cut(s)	895, 1231
BsrI	ACTGG	2 cut(s)	398, 1030
BssMI	GATC	4 cut(s)	390, 704, 952, 1416
Bst4CI	ACNGT	2 cut(s)	1301, 1465
Bst6I	CTCTTC	4 cut(s)	247, 750, 1068, 1401
BstBI	TTCGAA	1 cut(s)	102
BstDEI	CTNAG	6 cut(s)	371, 481, 695, 701, 998, 1088
BstF5I	GGATG	2 cut(s)	229, 301
BstFNI	CGCG	2 cut(s)	261, 1100
BstKTI	GATC	4 cut(s)	393, 707, 955, 1419
BstMAI	GTCTC	5 cut(s)	124, 143, 242, 840, 967
BstMBI	GATC	4 cut(s)	390, 704, 952, 1416
BstMWI	GCNNNNNNNGC	1 cut(s)	1084
BstNSI	RCATGY	1 cut(s)	777
BstSCI	CCNGG	1 cut(s)	588
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	2 cut(s)	261, 1100
BstV1I	GCAGC	3 cut(s)	347, 958, 1079
BstV2I	GAAGAC	3 cut(s)	51, 1319, 1382
BstX2I	RGATCY	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	704
BtsCI	GGATG	2 cut(s)	229, 301
BtsI	GCAGTG	1 cut(s)	1281
BtsIMutI	CAGTG	1 cut(s)	1281
CciI	TCATGA	1 cut(s)	847
CviAII	CATG	4 cut(s)	163, 533, 774, 848
DdeI	CTNAG	6 cut(s)	371, 481, 695, 701, 998, 1088
DpnI	GATC	4 cut(s)	392, 706, 954, 1418
DpnII	GATC	4 cut(s)	390, 704, 952, 1416
DraI	TTTAAA	1 cut(s)	831
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
Eam1104I	CTCTTC	4 cut(s)	247, 750, 1068, 1401
EarI	CTCTTC	4 cut(s)	247, 750, 1068, 1401
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	4 cut(s)	166, 536, 777, 851
FatI	CATG	4 cut(s)	162, 532, 773, 847
FbaI	TGATCA	2 cut(s)	390, 952
FblI	GTMKAC	2 cut(s)	931, 992
Fnu4HI	GCNGC	4 cut(s)	262, 361, 972, 1093
FokI	GGATG	2 cut(s)	216, 308
Fsp4HI	GCNGC	4 cut(s)	262, 361, 972, 1093
FspBI	CTAG	2 cut(s)	894, 1163
GluI	GCNGC	4 cut(s)	262, 361, 972, 1093
GsuI	CTGGAG	1 cut(s)	537
HapII	CCGG	1 cut(s)	590
Hin1II	CATG	4 cut(s)	166, 536, 777, 851
HincII	GTYRAC	1 cut(s)	993
HindII	GTYRAC	1 cut(s)	993
HindIII	AAGCTT	2 cut(s)	1054, 1394
HpaII	CCGG	1 cut(s)	590
Hpy166II	GTNNAC	2 cut(s)	932, 993
Hpy188I	TCNGA	7 cut(s)	295, 309, 374, 702, 814, 1176, 1416
Hpy188III	TCNNGA	5 cut(s)	185, 388, 752, 848, 1070
Hpy8I	GTNNAC	2 cut(s)	932, 993
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	2 cut(s)	1301, 1465
HpyCH4IV	ACGT	1 cut(s)	928
HpyCH4V	TGCA	4 cut(s)	678, 1095, 1224, 1274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1084
HpyF3I	CTNAG	6 cut(s)	371, 481, 695, 701, 998, 1088
HpySE526I	ACGT	1 cut(s)	928
Hsp92II	CATG	4 cut(s)	166, 536, 777, 851
Ksp22I	TGATCA	2 cut(s)	390, 952
Kzo9I	GATC	4 cut(s)	390, 704, 952, 1416
LguI	GCTCTTC	1 cut(s)	1068
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	8 cut(s)	411, 468, 567, 603, 654, 1011, 1254, 1362
Lsp1109I	GCAGC	3 cut(s)	347, 958, 1079
LweI	GCATC	2 cut(s)	158, 313
MaeI	CTAG	2 cut(s)	894, 1163
MaeII	ACGT	1 cut(s)	928
MaeIII	GTNAC	4 cut(s)	90, 265, 655, 1021
MalI	GATC	4 cut(s)	392, 706, 954, 1418
MboI	GATC	4 cut(s)	390, 704, 952, 1416
MflI	RGATCY	1 cut(s)	704
MluCI	AATT	7 cut(s)	9, 173, 198, 461, 521, 976, 1436
MlyI	GAGTC	5 cut(s)	706, 912, 988, 1075, 1165
MmeI	TCCRAC	1 cut(s)	661
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	7 cut(s)	516, 686, 767, 804, 830, 1052, 1154
MslI	CAYNNNNRTG	1 cut(s)	852
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	1 cut(s)	590
MvnI	CGCG	2 cut(s)	261, 1100
MwoI	GCNNNNNNNGC	1 cut(s)	1084
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	4 cut(s)	390, 704, 952, 1416
NlaIII	CATG	4 cut(s)	166, 536, 777, 851
NlaIV	GGNNCC	2 cut(s)	111, 420
NmuCI	GTSAC	1 cut(s)	1021
NspI	RCATGY	1 cut(s)	777
NspV	TTCGAA	1 cut(s)	102
PagI	TCATGA	1 cut(s)	847
PciI	ACATGT	1 cut(s)	773
PciSI	GCTCTTC	1 cut(s)	1068
PcsI	WCGNNNNNNNCGW	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	9 cut(s)	25, 104, 614, 633, 748, 824, 844, 1411, 1475
PkrI	GCNGC	4 cut(s)	263, 362, 973, 1094
PleI	GAGTC	5 cut(s)	705, 912, 988, 1074, 1165
PpsI	GAGTC	5 cut(s)	705, 912, 988, 1074, 1165
PscI	ACATGT	1 cut(s)	773
PspN4I	GGNNCC	2 cut(s)	111, 420
PsuI	RGATCY	1 cut(s)	704
RseI	CAYNNNNRTG	1 cut(s)	852
SalI	GTCGAC	1 cut(s)	991
SapI	GCTCTTC	1 cut(s)	1068
SaqAI	TTAA	7 cut(s)	516, 686, 767, 804, 830, 1052, 1154
SatI	GCNGC	4 cut(s)	262, 361, 972, 1093
Sau3AI	GATC	4 cut(s)	390, 704, 952, 1416
SchI	GAGTC	5 cut(s)	706, 912, 988, 1075, 1165
ScrFI	CCNGG	1 cut(s)	590
SfaNI	GCATC	2 cut(s)	158, 313
SfcI	CTRYAG	1 cut(s)	142
SfuI	TTCGAA	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	852
Sse9I	AATT	7 cut(s)	9, 173, 198, 461, 521, 976, 1436
SsiI	CCGC	1 cut(s)	261
SspMI	CTAG	2 cut(s)	894, 1163
StyD4I	CCNGG	1 cut(s)	588
TaaI	ACNGT	2 cut(s)	1301, 1465
TaiI	ACGT	1 cut(s)	931
TaqII	GACCGA	1 cut(s)	962
TasI	AATT	7 cut(s)	9, 173, 198, 461, 521, 976, 1436
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	9 cut(s)	25, 104, 614, 633, 748, 824, 844, 1411, 1475
Tru1I	TTAA	7 cut(s)	516, 686, 767, 804, 830, 1052, 1154
Tru9I	TTAA	7 cut(s)	516, 686, 767, 804, 830, 1052, 1154
TscAI	CASTG	1 cut(s)	1281
TseFI	GTSAC	1 cut(s)	1021
TseI	GCWGC	3 cut(s)	360, 971, 1092
Tsp45I	GTSAC	1 cut(s)	1021
TspDTI	ATGAA	4 cut(s)	396, 498, 836, 1388
TspRI	CASTG	1 cut(s)	1281
XapI	RAATTY	2 cut(s)	9, 976
XceI	RCATGY	1 cut(s)	777
XmiI	GTMKAC	2 cut(s)	931, 992
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	2 cut(s)	894, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.