Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010411

Physical Location & Seq

Genomic Coordinates Reverse (-)

81251812 .. 81253215

Gene Structure 1404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022136

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGACAAGTTGCTTTGTGATGAACTTGTACAAGAAATCTTCTTGAGACTGCCACCACCTTCTTCCTCCTCTGTTTCTCTGGTCTCCAAGCGCTGGCTTCACCTCCACCGCACCTCCAGAACCTCTCTCACTCTCCGCCTCACCGGAGAAGATTCCACAGTCGCTTCTCTCTCCTCCCTCCTCTCTCACTACCCTTTCCTCTCTTGCCTCTCTATTCTGTTATCTGATCCCAGAACCAAGACCACTTTGGCTGATCAGCTCCTTCTGTTGGTCTGTACCTTTTGTGCTCAGCTACACAGCCTCAGGTTCTTGGCTGGTCCAGTTTCTGTGTCCTCCCTCAATTCTCTCTCTACAGCATGTACCCAACTCACCTCTCTATGTATCAGTCTCTCCAGGCCTCTCTTCCTCATGTGGATCATCAGTTTTCCAAAATTGAAAGAGTTGTCAATCATGGTCTGCTCTGGGTTTGGGGTTGAACAAGGAAATGGTTATGGTTGTTTTGCAGGTGAGGATTCTGATGCTGAATTGGGTTTAGAGAGTCTTTGTTTATCTGGGATTGGAGCTGGTGATTGGGGATTGGGTTGGCTTTGGAGGAGCTGTAGAAAGCTGAAGAAATTGCAGCTGAAGAGCTGTGAGGGAGTTGGGGAGGGGAACTCTTTTTCGTCATTTATTATGTGCTTGCAGGGGGTTCAAGAAGTGGAGCTCAGGACTTGTAGGAGTATACTCGATGGGGTTCTGTTGAAATTGGCCGAAAATTGTGTTTCTCTGACTTCCCTTTTGGTTTATGATGGTGGTAGCAGGGAGGGTCTGCTCAGGTTCTTTAGTCAATGCCATTGCAATTTGCAAAAACTCGATTTTCGATTGCCTCTTGACCTTAAGAATGATCATCTATTGGCTGTTGCTACGAATTACAGAAGCCTTTCGAGTATTAGGCTTCAGAGTTGTTGTCTTGTCAGTGGTGAAGGCCTAAAGGCACTCGGGACTGCTGTGAGTTCTGGCCTCGAAGAATTGGCACTAATAAACTGTGATGTGGTTGAAAGGGAACCAGGGTTGCTGTCCACATTAGGACAGAATTTGAGGAAACTGAGGAAATTGGATTTGTCGTACAATGAATTGTTGCTTGACAAGGAATTCATGTCGATGCTAGTTTCGTGTAACTATTTGGTTGATTTGAGGGTGAGAGGGTGCAAAAGGCTTACTAATGCATCCATCATTTCTATGTTAAAGAGCTGTAAATGTTTGGAGAGTGTTGATATTATGCACTGTGGTGGGATTCAGGCTGAAGCAGTTGAGTCTTTCGTTCTGAACTCTCCTCAGCTGAGACGGGTACAGGTGGAAGAAAGCAAGATATCAGATGTTGCAAAGACATGGGCCTCGCATAAGTTCATTGAAGCTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

468

Amino Acids

51.31

Weight (kDa)

7.38

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40470
fragaria_vesca	FvH4_6g51200 FvH4_6g51200 FvH4_6g51200 FvH4_6g51200
malus_domestica	MD09G1027100.v1.1 MD17G1027100.v1.1
prunus_persica	Prupe.3G291600_v2.0.a1
pyrus_communis	pycom111g02120 pycom17g02220
rosa_chinensis	RchiOBHm_Chr2g0172801
rosa_laevigata	RLG00000022136
rosa_multiflora	Rmu_co8170410.1_g000001 Rmu_sc0002979.1_g000011
rosa_roxburghii	Rroxscaffold_2G00079500
rosa_rugosa	Rorug02G0561800
rosa_samantha	Rh2AG639500 Rh2BG652900 Rh2CG618700 Rh2DG666600
rosa_wichuraiana	Rw2G052790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	494
Acc36I	ACCTGC	1 cut(s)	494
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	721
AciI	CCGC	2 cut(s)	109, 136
AclWI	GGATC	2 cut(s)	221, 422
AcoI	YGGCCR	1 cut(s)	747
AcsI	RAATTY	2 cut(s)	1072, 1130
AcuI	CTGAAG	4 cut(s)	629, 644, 920, 1302
AfaI	GTAC	5 cut(s)	30, 277, 361, 1106, 1329
AfeI	AGCGCT	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	93, 268
AflII	CTTAAG	1 cut(s)	875
AgsI	TTSAA	6 cut(s)	436, 476, 692, 742, 1037, 1391
AjnI	CCWGG	2 cut(s)	392, 1045
AleI	CACNNNNGTG	1 cut(s)	1266
Alw21I	GWGCWC	2 cut(s)	289, 705
Alw26I	GTCTC	4 cut(s)	40, 88, 392, 1315
AlwI	GGATC	2 cut(s)	221, 422
AlwNI	CAGNNNCTG	1 cut(s)	326
Ama87I	CYCGRG	1 cut(s)	977
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	5 cut(s)	395, 747, 964, 997, 1371
ApeKI	GCWGC	1 cut(s)	619
ApoI	RAATTY	2 cut(s)	1072, 1130
ArsI	GACNNNNNNTTYG	2 cut(s)	760, 792
Asp700I	GAANNNNTTC	1 cut(s)	919
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	317, 1371
AsuHPI	GGTGA	7 cut(s)	92, 133, 361, 518, 578, 971, 1189
AvaI	CYCGRG	1 cut(s)	977
AvaII	GGWCC	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	705
Bbv12I	GWGCWC	2 cut(s)	289, 705
BbvCI	CCTCAGC	1 cut(s)	1314
BbvI	GCAGC	1 cut(s)	631
BccI	CCATC	3 cut(s)	722, 782, 1217
BciT130I	CCWGG	2 cut(s)	394, 1047
BclI	TGATCA	2 cut(s)	253, 883
BcoDI	GTCTC	4 cut(s)	40, 88, 392, 1315
BfaI	CTAG	1 cut(s)	1145
BfmI	CTRYAG	2 cut(s)	351, 598
BfoI	RGCGCY	1 cut(s)	94
BfrI	CTTAAG	1 cut(s)	875
BfuAI	ACCTGC	1 cut(s)	494
BisI	GCNGC	1 cut(s)	620
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	621
Bme1390I	CCNGG	2 cut(s)	394, 1047
Bme18I	GGWCC	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	977
BmgT120I	GGNCC	2 cut(s)	317, 1371
BmiI	GGNNCC	1 cut(s)	1044
BmrFI	CCNGG	2 cut(s)	394, 1047
BmsI	GCATC	3 cut(s)	508, 1131, 1214
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
BpmI	CTGGAG	2 cut(s)	100, 376
Bpu10I	CCTNAGC	3 cut(s)	704, 812, 1314
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	1046
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 583, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 268
Bse1I	ACTGG	1 cut(s)	320
Bse21I	CCTNAGG	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	832
BseBI	CCWGG	2 cut(s)	394, 1047
BseDI	CCNNGG	1 cut(s)	1046
BseGI	GGATG	1 cut(s)	1205
BseLI	CCNNNNNNNGG	2 cut(s)	93, 268
BseMI	GCAATG	1 cut(s)	832
BseMII	CTCAG	7 cut(s)	302, 316, 718, 826, 1076, 1310, 1328
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	5 cut(s)	58, 163, 170, 607, 1302
BseXI	GCAGC	1 cut(s)	631
BshFI	GGCC	5 cut(s)	397, 749, 966, 999, 1373
BsiHKAI	GWGCWC	2 cut(s)	289, 705
BsiHKCI	CYCGRG	1 cut(s)	977
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	994
BslI	CCNNNNNNNGG	2 cut(s)	93, 268
BsmAI	GTCTC	4 cut(s)	40, 88, 392, 1315
BsmBI	CGTCTC	1 cut(s)	1315
BsmFI	GGGAC	1 cut(s)	994
BsnI	GGCC	5 cut(s)	397, 749, 966, 999, 1373
Bso31I	GGTCTC	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	977
Bsp1286I	GDGCHC	2 cut(s)	289, 705
Bsp1407I	TGTACA	1 cut(s)	28
Bsp143I	GATC	4 cut(s)	226, 253, 414, 883
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	2 cut(s)	109, 136
BspANI	GGCC	5 cut(s)	397, 749, 966, 999, 1373
BspCNI	CTCAG	7 cut(s)	301, 315, 717, 825, 1077, 1311, 1327
BspLI	GGNNCC	1 cut(s)	1044
BspMI	ACCTGC	1 cut(s)	494
BspPI	GGATC	2 cut(s)	221, 422
BspQI	GCTCTTC	1 cut(s)	620
BspTI	CTTAAG	1 cut(s)	875
BspTNI	GGTCTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	832
BsrGI	TGTACA	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	1046
BssMI	GATC	4 cut(s)	226, 253, 414, 883
BssNAI	GTATAC	1 cut(s)	722
Bst1107I	GTATAC	1 cut(s)	722
Bst2UI	CCWGG	2 cut(s)	394, 1047
Bst4CI	ACNGT	3 cut(s)	160, 1025, 1265
Bst6I	CTCTTC	2 cut(s)	407, 620
BstAFI	CTTAAG	1 cut(s)	875
BstAUI	TGTACA	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	95, 680
BstDEI	CTNAG	7 cut(s)	288, 302, 704, 812, 1085, 1314, 1319
BstF5I	GGATG	1 cut(s)	1205
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	4 cut(s)	229, 256, 417, 886
BstMAI	GTCTC	4 cut(s)	40, 88, 392, 1315
BstMBI	GATC	4 cut(s)	226, 253, 414, 883
BstNI	CCWGG	2 cut(s)	394, 1047
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	2 cut(s)	392, 1045
BstSFI	CTRYAG	2 cut(s)	351, 598
BstV1I	GCAGC	1 cut(s)	631
BstZ17I	GTATAC	1 cut(s)	722
Bsu36I	CCTNAGG	1 cut(s)	302
BsuRI	GGCC	5 cut(s)	397, 749, 966, 999, 1373
BtsCI	GGATG	1 cut(s)	1205
BtsIMutI	CAGTG	2 cut(s)	961, 1261
BveI	ACCTGC	1 cut(s)	494
Cac8I	GCNNGC	2 cut(s)	95, 680
CaiI	CAGNNNCTG	1 cut(s)	326
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	317, 1371
Csp6I	GTAC	5 cut(s)	29, 276, 360, 1105, 1328
CviAII	CATG	5 cut(s)	357, 409, 451, 1135, 1368
CviQI	GTAC	5 cut(s)	29, 276, 360, 1105, 1328
DdeI	CTNAG	7 cut(s)	288, 302, 704, 812, 1085, 1314, 1319
DpnI	GATC	4 cut(s)	228, 255, 416, 885
DpnII	GATC	4 cut(s)	226, 253, 414, 883
EaeI	YGGCCR	1 cut(s)	747
Eam1104I	CTCTTC	2 cut(s)	407, 620
EarI	CTCTTC	2 cut(s)	407, 620
EciI	GGCGGA	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	703
Eco147I	AGGCCT	2 cut(s)	397, 966
Eco24I	GRGCYC	1 cut(s)	705
Eco31I	GGTCTC	1 cut(s)	88
Eco32I	GATATC	1 cut(s)	1350
Eco47I	GGWCC	1 cut(s)	317
Eco47III	AGCGCT	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	703
Eco57I	CTGAAG	4 cut(s)	629, 644, 920, 1302
Eco81I	CCTNAGG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	977
EcoICRI	GAGCTC	1 cut(s)	703
EcoRI	GAATTC	1 cut(s)	1130
EcoRII	CCWGG	2 cut(s)	392, 1045
EcoRV	GATATC	1 cut(s)	1350
EcoT22I	ATGCAT	1 cut(s)	1207
EcoT38I	GRGCYC	1 cut(s)	705
Esp3I	CGTCTC	1 cut(s)	1315
FaeI	CATG	5 cut(s)	360, 412, 454, 1138, 1371
FaqI	GGGAC	1 cut(s)	994
FatI	CATG	5 cut(s)	356, 408, 450, 1134, 1367
FbaI	TGATCA	2 cut(s)	253, 883
FblI	GTMKAC	1 cut(s)	721
Fnu4HI	GCNGC	1 cut(s)	620
FokI	GGATG	1 cut(s)	1192
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	1 cut(s)	620
FspBI	CTAG	1 cut(s)	1145
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	1 cut(s)	620
GsuI	CTGGAG	2 cut(s)	100, 376
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	5 cut(s)	397, 749, 966, 999, 1373
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	5 cut(s)	360, 412, 454, 1138, 1371
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	5 cut(s)	152, 512, 538, 1273, 1292
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	7 cut(s)	92, 133, 361, 518, 578, 971, 1189
Hpy166II	GTNNAC	2 cut(s)	722, 1059
Hpy188I	TCNGA	6 cut(s)	226, 517, 768, 939, 1305, 1354
Hpy188III	TCNNGA	6 cut(s)	43, 117, 692, 706, 869, 979
Hpy8I	GTNNAC	2 cut(s)	722, 1059
HpyAV	CCTTC	3 cut(s)	69, 272, 956
HpyCH4III	ACNGT	3 cut(s)	160, 1025, 1265
HpyCH4V	TGCA	9 cut(s)	503, 619, 682, 837, 844, 1188, 1205, 1261, 1361
HpyF3I	CTNAG	7 cut(s)	288, 302, 704, 812, 1085, 1314, 1319
Hsp92II	CATG	5 cut(s)	360, 412, 454, 1138, 1371
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	2 cut(s)	253, 883
Kzo9I	GATC	4 cut(s)	226, 253, 414, 883
LguI	GCTCTTC	1 cut(s)	620
LmnI	GCTCC	4 cut(s)	264, 560, 594, 700
Lsp1109I	GCAGC	1 cut(s)	631
LweI	GCATC	3 cut(s)	508, 1131, 1214
MaeI	CTAG	1 cut(s)	1145
MaeIII	GTNAC	1 cut(s)	1154
MalI	GATC	4 cut(s)	228, 255, 416, 885
MboI	GATC	4 cut(s)	226, 253, 414, 883
MboII	GAAGA	8 cut(s)	31, 54, 161, 394, 622, 637, 1016, 1349
MhlI	GDGCHC	2 cut(s)	289, 705
MlyI	GAGTC	2 cut(s)	547, 1301
Mph1103I	ATGCAT	1 cut(s)	1207
MroXI	GAANNNNTTC	1 cut(s)	919
MseI	TTAA	2 cut(s)	876, 1223
MslI	CAYNNNNRTG	3 cut(s)	1139, 1217, 1266
MspA1I	CMGCKG	2 cut(s)	622, 1318
MspCI	CTTAAG	1 cut(s)	875
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	394, 1047
MvaI	CCWGG	2 cut(s)	394, 1047
NdeII	GATC	4 cut(s)	226, 253, 414, 883
NlaIII	CATG	5 cut(s)	360, 412, 454, 1138, 1371
NlaIV	GGNNCC	1 cut(s)	1044
NsiI	ATGCAT	1 cut(s)	1207
NspI	RCATGY	1 cut(s)	360
OliI	CACNNNNGTG	1 cut(s)	1266
PaqCI	CACCTGC	1 cut(s)	494
PceI	AGGCCT	2 cut(s)	397, 966
PciSI	GCTCTTC	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	919
PfeI	GAWTC	3 cut(s)	152, 512, 1273
PflMI	CCANNNNNTGG	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	621
PleI	GAGTC	2 cut(s)	546, 1300
PpsI	GAGTC	2 cut(s)	546, 1300
Psp124BI	GAGCTC	1 cut(s)	705
Psp6I	CCWGG	2 cut(s)	392, 1045
PspGI	CCWGG	2 cut(s)	392, 1045
PspN4I	GGNNCC	1 cut(s)	1044
PspPI	GGNCC	2 cut(s)	317, 1371
PstNI	CAGNNNCTG	1 cut(s)	326
PvuII	CAGCTG	2 cut(s)	622, 1318
RsaI	GTAC	5 cut(s)	30, 277, 361, 1106, 1329
RsaNI	GTAC	5 cut(s)	29, 276, 360, 1105, 1328
RseI	CAYNNNNRTG	3 cut(s)	1139, 1217, 1266
SacI	GAGCTC	1 cut(s)	705
SapI	GCTCTTC	1 cut(s)	620
SaqAI	TTAA	2 cut(s)	876, 1223
SatI	GCNGC	1 cut(s)	620
Sau3AI	GATC	4 cut(s)	226, 253, 414, 883
Sau96I	GGNCC	2 cut(s)	317, 1371
SchI	GAGTC	2 cut(s)	547, 1301
ScrFI	CCNGG	2 cut(s)	394, 1047
SduI	GDGCHC	2 cut(s)	289, 705
SfaNI	GCATC	3 cut(s)	508, 1131, 1214
SfcI	CTRYAG	2 cut(s)	351, 598
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	3 cut(s)	1139, 1217, 1266
SmlI	CTYRAG	2 cut(s)	43, 875
SmoI	CTYRAG	2 cut(s)	43, 875
SseBI	AGGCCT	2 cut(s)	397, 966
SsiI	CCGC	2 cut(s)	109, 136
SspMI	CTAG	1 cut(s)	1145
SstI	GAGCTC	1 cut(s)	705
StuI	AGGCCT	2 cut(s)	397, 966
StyD4I	CCNGG	2 cut(s)	392, 1045
TaaI	ACNGT	3 cut(s)	160, 1025, 1265
TaqI	TCGA	6 cut(s)	726, 852, 859, 923, 1002, 1139
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	3 cut(s)	152, 512, 1273
Tru1I	TTAA	2 cut(s)	876, 1223
Tru9I	TTAA	2 cut(s)	876, 1223
TscAI	CASTG	2 cut(s)	961, 1268
TseI	GCWGC	1 cut(s)	619
TspDTI	ATGAA	4 cut(s)	36, 1123, 1125, 1375
TspRI	CASTG	2 cut(s)	961, 1268
Van91I	CCANNNNNTGG	1 cut(s)	93
Vha464I	CTTAAG	1 cut(s)	875
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	2 cut(s)	1072, 1130
XceI	RCATGY	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	721
XmnI	GAANNNNTTC	1 cut(s)	919
XspI	CTAG	1 cut(s)	1145
Zsp2I	ATGCAT	1 cut(s)	1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.