MD09G1027100.v1.1

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
1683261 .. 1684682
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1027100.v1.1.491

Sequence Viewer

Length: 1422 bp
ATGGACAAGGCGCTATGTGATGAACTAGTTCAAGAGGTATTCCAAAGGCTGCCACCATCAACCTCCTCCACCGTCTCTCTGGTCTCCAAGCGGTGGCTCCACCTCTACCGCACCTCCACCACCTCCCTCTCTCTCCGCCTCACCCCTCATCATTCCACCCTGCCTTCTCTCTCCTCCCTCCTATCTCACTACCCTTTCCTCTCTTCCCTCTCTCTCCTCTTACCCTCCGACCCCACCACCGCCGCAAAAAACACCGCTTTTTCCGATCACCTCCTCCTCCTAGTCTCCTCCTTCTGCCCCCAGCTTCGCAGCCTCAGGTTCTTGGCCGGCCCTGTCTCTCTCTCCTCACTCACTTCTCTCTCCTCATCATGTACCCACCTAACCTCTCTCTGCATCAATCTGTCCAGGTCCAGGCCTCTGTTCCTCATGTGGGTCATCAAGTTTCCGTCTTTGAAGGAACTGTCAATCTTGGTTTGCTCCGGGGACGGCGTTGACCCCAATTGGGAACATGGGTTTTCTGCGGAGGAGGATTCTGCTGCAGAGTTGGGTTTGGAGAGTCTCTGTTTATCTGGAATCGGAGCCGGCGATTGGGGTTTTGGGTGGCTATGGAGGAGCTGCAGAAAGCTGAAGAAACTGCAGTTGAAGAGCTGTGAAGGGATTGGGGATGGAGGGTCATTTTCGTCATTTGCCATGTGTTTGCAGGGTGTTCAGGAGCTGGAGCTCCGGACTTGTAGGGCGATAATCGACGGCGTTCTACTGAAAGTGGCGGAGAATTGTGATTCTCTGACTTCCCTTTTGGTTTATGATGGTGGCAGCAGAGATGGTCTGCTTAAATTCTTCAACCGAAGGCGTTGTAACCTGCGAAAACTCAATTTTCGATTGCCTCTCGACCTTAATAACGATCATCTGTTGGCTGTGGCGAAGAATTTTAGAAGCATTTCAAGTATTAAGCTTCAAAGTTGCTGTCTTGTGAGTGGTGAAGGCATCAAGGCTCTTGCTATCGCTGCGAGTTCTGGCCTCGAAGAATTGGCACTGGTGAATTGTGATGTGGTTGAAAGAGAACCGGGGTTGTTGGCCACATTAGGACAGAATTTGAGGCAATTGAGGAAGTTGGATTTGTCTTATAACGAAATGTTGGTGGATAAAGAGTTCGCATCTATGTTAGTTTCATGTAATGATTTGGTTGATTTGAGGCTGAGAGGGTGCGGAGGGCTTACTTATGACGCCATGGTTTCGATTTTTAAGAGCTGTAAGCGTTTGGAGAGTGTTGATATCATGCACTGCAGTGGGATTCAAGCCGAGGCGATTCAGTTTTTGGTGCTCAGCTGCCCTCAGCTGAGACAGGTGCAGGTGGAGCAAAGCAAGGTAACGGATGCCGCAAAGACTTGGGCCTCATGTAAGTTCGTTGCGGCTGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

474

Amino Acids

51.83

Weight (kDa)

7.76

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1125
AarI CACCTGC 1 cut(s) 1339
Acc36I ACCTGC 2 cut(s) 867, 1339
AccB7I CCANNNNNTGG 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 723
AcoI YGGCCR 2 cut(s) 324, 1074
AcsI RAATTY 3 cut(s) 833, 925, 1090
AcuI CTGAAG 1 cut(s) 647
AcyI GRCGYC 1 cut(s) 1224
AfaI GTAC 1 cut(s) 373
AfiI CCNNNNNNNGG 5 cut(s) 93, 411, 430, 502, 588
AgsI TTSAA 8 cut(s) 32, 454, 643, 841, 942, 956, 1055, 1295
AhlI ACTAGT 1 cut(s) 25
AjnI CCWGG 2 cut(s) 404, 410
AleI CACNNNNGTG 1 cut(s) 1284
AloI GAACNNNNNNTCC 2 cut(s) 1133, 1165
Alw21I GWGCWC 2 cut(s) 723, 1323
Alw26I GTCTC 6 cut(s) 79, 88, 289, 340, 563, 1333
AlwNI CAGNNNCTG 1 cut(s) 715
Aor13HI TCCGGA 1 cut(s) 723
AoxI GGCC 6 cut(s) 324, 328, 413, 1015, 1074, 1389
ApeKI GCWGC 7 cut(s) 49, 309, 536, 615, 813, 1004, 1326
ApoI RAATTY 3 cut(s) 833, 925, 1090
ArsI GACNNNNNNTTYG 4 cut(s) 778, 810, 949, 981
Asp700I GAANNNNTTC 2 cut(s) 27, 937
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 3 cut(s) 329, 408, 1389
AsuC2I CCSGG 2 cut(s) 481, 1065
AsuHPI GGTGA 4 cut(s) 133, 260, 989, 1048
AvaII GGWCC 1 cut(s) 408
AxyI CCTNAGG 1 cut(s) 314
BalI TGGCCA 1 cut(s) 1076
BanII GRGCYC 1 cut(s) 723
Bbv12I GWGCWC 2 cut(s) 723, 1323
BbvCI CCTCAGC 1 cut(s) 1332
BbvI GCAGC 7 cut(s) 36, 321, 523, 602, 825, 991, 1313
BccI CCATC 4 cut(s) 64, 659, 800, 815
BceAI ACGGC 2 cut(s) 502, 763
BciT130I CCWGG 2 cut(s) 406, 412
BcnI CCSGG 2 cut(s) 481, 1065
BcoDI GTCTC 6 cut(s) 79, 88, 289, 340, 563, 1333
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 2 cut(s) 26, 281
BfmI CTRYAG 4 cut(s) 537, 616, 635, 1282
BfoI RGCGCY 1 cut(s) 14
BfuAI ACCTGC 2 cut(s) 867, 1339
BlpI GCTNAGC 1 cut(s) 1322
Bme1390I CCNGG 4 cut(s) 406, 412, 481, 1065
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 3 cut(s) 329, 408, 1389
BmiI GGNNCC 2 cut(s) 98, 580
BmrFI CCNGG 4 cut(s) 406, 412, 481, 1065
BmsI GCATC 5 cut(s) 402, 993, 1163, 1363, 1405
BpmI CTGGAG 1 cut(s) 737
Bpu10I CCTNAGC 1 cut(s) 1332
Bpu1102I GCTNAGC 1 cut(s) 1322
BpuMI CCSGG 2 cut(s) 481, 1065
BsaHI GRCGYC 1 cut(s) 1224
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 4 cut(s) 480, 1064, 1227, 1299
BsaWI WCCGGW 1 cut(s) 723
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 5 cut(s) 93, 411, 430, 502, 588
Bse118I RCCGGY 2 cut(s) 326, 581
Bse1I ACTGG 1 cut(s) 1038
Bse21I CCTNAGG 1 cut(s) 314
BseAI TCCGGA 1 cut(s) 723
BseBI CCWGG 2 cut(s) 406, 412
BseDI CCNNGG 4 cut(s) 480, 1064, 1227, 1299
BseGI GGATG 2 cut(s) 670, 1378
BseLI CCNNNNNNNGG 5 cut(s) 93, 411, 430, 502, 588
BseMII CTCAG 5 cut(s) 328, 1187, 1328, 1336, 1346
BseNI ACTGG 1 cut(s) 1038
BseXI GCAGC 7 cut(s) 36, 321, 523, 602, 825, 991, 1313
BseYI CCCAGC 1 cut(s) 300
BsgI GTGCAG 1 cut(s) 1367
BshFI GGCC 6 cut(s) 326, 330, 415, 1017, 1076, 1391
BsiHKAI GWGCWC 2 cut(s) 723, 1323
BsiSI CCGG 5 cut(s) 327, 480, 582, 724, 1064
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 5 cut(s) 93, 411, 430, 502, 588
BsmAI GTCTC 6 cut(s) 79, 88, 289, 340, 563, 1333
BsmBI CGTCTC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 6 cut(s) 326, 330, 415, 1017, 1076, 1391
Bso31I GGTCTC 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 723, 1323
Bsp13I TCCGGA 1 cut(s) 723
Bsp143I GATC 2 cut(s) 265, 901
Bsp1720I GCTNAGC 1 cut(s) 1322
Bsp19I CCATGG 1 cut(s) 1227
BspANI GGCC 6 cut(s) 326, 330, 415, 1017, 1076, 1391
BspCNI CTCAG 5 cut(s) 327, 1188, 1329, 1335, 1345
BspEI TCCGGA 1 cut(s) 723
BspLI GGNNCC 2 cut(s) 98, 580
BspMAI CTGCAG 4 cut(s) 541, 620, 639, 1286
BspMI ACCTGC 2 cut(s) 867, 1339
BspQI GCTCTTC 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 88
BsrFI RCCGGY 2 cut(s) 326, 581
BsrI ACTGG 1 cut(s) 1038
BssAI RCCGGY 2 cut(s) 326, 581
BssECI CCNNGG 4 cut(s) 480, 1064, 1227, 1299
BssMI GATC 2 cut(s) 265, 901
BssNI GRCGYC 1 cut(s) 1224
BssT1I CCWWGG 1 cut(s) 1227
Bst2UI CCWGG 2 cut(s) 406, 412
Bst4CI ACNGT 2 cut(s) 73, 462
Bst6I CTCTTC 2 cut(s) 208, 638
BstACI GRCGYC 1 cut(s) 1224
BstC8I GCNNGC 2 cut(s) 328, 583
BstDEI CTNAG 5 cut(s) 314, 1196, 1322, 1332, 1337
BstDSI CCRYGG 1 cut(s) 1227
BstF5I GGATG 2 cut(s) 670, 1378
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 2 cut(s) 268, 904
BstMAI GTCTC 6 cut(s) 79, 88, 289, 340, 563, 1333
BstMBI GATC 2 cut(s) 265, 901
BstMWI GCNNNNNNNGC 3 cut(s) 1004, 1354, 1415
BstNI CCWGG 2 cut(s) 406, 412
BstSCI CCNGG 4 cut(s) 404, 410, 479, 1063
BstSFI CTRYAG 4 cut(s) 537, 616, 635, 1282
BstV1I GCAGC 7 cut(s) 36, 321, 523, 602, 825, 991, 1313
Bsu36I CCTNAGG 1 cut(s) 314
BsuRI GGCC 6 cut(s) 326, 330, 415, 1017, 1076, 1391
BtgI CCRYGG 1 cut(s) 1227
BtsCI GGATG 2 cut(s) 670, 1378
BtsI GCAGTG 2 cut(s) 1279, 1291
BtsIMutI CAGTG 3 cut(s) 1031, 1279, 1291
BveI ACCTGC 2 cut(s) 867, 1339
Cac8I GCNNGC 2 cut(s) 328, 583
CaiI CAGNNNCTG 1 cut(s) 715
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 2 cut(s) 326, 581
Cfr13I GGNCC 3 cut(s) 329, 408, 1389
CseI GACGC 1 cut(s) 1232
Csp6I GTAC 1 cut(s) 372
CviAII CATG 8 cut(s) 369, 427, 509, 691, 1170, 1228, 1276, 1395
CviQI GTAC 1 cut(s) 372
DdeI CTNAG 5 cut(s) 314, 1196, 1322, 1332, 1337
DpnI GATC 2 cut(s) 267, 903
DpnII GATC 2 cut(s) 265, 901
EaeI YGGCCR 2 cut(s) 324, 1074
Eam1104I CTCTTC 2 cut(s) 208, 638
EarI CTCTTC 2 cut(s) 208, 638
EciI GGCGGA 2 cut(s) 125, 782
Ecl136II GAGCTC 1 cut(s) 721
Eco130I CCWWGG 1 cut(s) 1227
Eco147I AGGCCT 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 723
Eco31I GGTCTC 1 cut(s) 88
Eco32I GATATC 1 cut(s) 1273
Eco47I GGWCC 1 cut(s) 408
Eco53kI GAGCTC 1 cut(s) 721
Eco57I CTGAAG 1 cut(s) 647
Eco81I CCTNAGG 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 404, 410
EcoRV GATATC 1 cut(s) 1273
EcoT14I CCWWGG 1 cut(s) 1227
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 1227
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 8 cut(s) 372, 430, 512, 694, 1173, 1231, 1279, 1398
FaqI GGGAC 1 cut(s) 497
FatI CATG 8 cut(s) 368, 426, 508, 690, 1169, 1227, 1275, 1394
FokI GGATG 2 cut(s) 677, 1385
FriOI GRGCYC 1 cut(s) 723
FseI GGCCGGCC 1 cut(s) 330
FspBI CTAG 2 cut(s) 26, 281
GlaI GCGC 1 cut(s) 12
GsaI CCCAGC 1 cut(s) 304
GsuI CTGGAG 1 cut(s) 737
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 6 cut(s) 326, 330, 415, 1017, 1076, 1391
HapII CCGG 5 cut(s) 327, 480, 582, 724, 1064
HgaI GACGC 1 cut(s) 1232
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 1 cut(s) 1224
Hin1II CATG 8 cut(s) 372, 430, 512, 694, 1173, 1231, 1279, 1398
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HindIII AAGCTT 1 cut(s) 950
HinfI GANTC 6 cut(s) 530, 556, 573, 779, 1291, 1306
HpaII CCGG 5 cut(s) 327, 480, 582, 724, 1064
HphI GGTGA 4 cut(s) 133, 260, 989, 1048
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 4 cut(s) 229, 265, 578, 786
Hpy188III TCNNGA 5 cut(s) 32, 570, 710, 724, 887
Hpy8I GTNNAC 1 cut(s) 493
Hpy99I CGWCG 1 cut(s) 749
HpyAV CCTTC 6 cut(s) 174, 301, 448, 647, 840, 974
HpyCH4III ACNGT 2 cut(s) 73, 462
HpyCH4V TGCA 8 cut(s) 393, 539, 618, 637, 700, 1279, 1284, 1348
HpyF10VI GCNNNNNNNGC 3 cut(s) 1004, 1354, 1415
HpyF3I CTNAG 5 cut(s) 314, 1196, 1322, 1332, 1337
Hsp92I GRCGYC 1 cut(s) 1224
Hsp92II CATG 8 cut(s) 372, 430, 512, 694, 1173, 1231, 1279, 1398
HspAI GCGC 1 cut(s) 11
Kpn2I TCCGGA 1 cut(s) 723
KroI GCCGGC 2 cut(s) 326, 581
KroNI GCCGGC 2 cut(s) 328, 583
Kzo9I GATC 2 cut(s) 265, 901
LguI GCTCTTC 1 cut(s) 638
LmnI GCTCC 8 cut(s) 102, 482, 578, 612, 712, 718, 726, 1354
Lsp1109I GCAGC 7 cut(s) 36, 321, 523, 602, 825, 991, 1313
LweI GCATC 5 cut(s) 402, 993, 1163, 1363, 1405
MaeI CTAG 2 cut(s) 26, 281
MaeIII GTNAC 2 cut(s) 854, 1366
MalI GATC 2 cut(s) 267, 903
MboI GATC 2 cut(s) 265, 901
MboII GAAGA 6 cut(s) 195, 640, 655, 829, 934, 1034
MfeI CAATTG 2 cut(s) 499, 1100
MhlI GDGCHC 2 cut(s) 723, 1323
MlsI TGGCCA 1 cut(s) 1076
MluCI AATT 9 cut(s) 499, 772, 833, 871, 925, 1025, 1039, 1090, 1100
MluNI TGGCCA 1 cut(s) 1076
MlyI GAGTC 1 cut(s) 565
MmeI TCCRAC 2 cut(s) 252, 1092
Mox20I TGGCCA 1 cut(s) 1076
MroI TCCGGA 1 cut(s) 723
MroNI GCCGGC 2 cut(s) 326, 581
MroXI GAANNNNTTC 2 cut(s) 27, 937
MscI TGGCCA 1 cut(s) 1076
MseI TTAA 4 cut(s) 831, 894, 948, 1242
MslI CAYNNNNRTG 1 cut(s) 1284
Msp20I TGGCCA 1 cut(s) 1076
MspA1I CMGCKG 2 cut(s) 1326, 1336
MspI CCGG 5 cut(s) 327, 480, 582, 724, 1064
MspR9I CCNGG 4 cut(s) 406, 412, 481, 1065
MunI CAATTG 2 cut(s) 499, 1100
MvaI CCWGG 2 cut(s) 406, 412
MwoI GCNNNNNNNGC 3 cut(s) 1004, 1354, 1415
NaeI GCCGGC 2 cut(s) 328, 583
NciI CCSGG 2 cut(s) 481, 1065
NcoI CCATGG 1 cut(s) 1227
NdeII GATC 2 cut(s) 265, 901
NgoMIV GCCGGC 2 cut(s) 326, 581
NlaIII CATG 8 cut(s) 372, 430, 512, 694, 1173, 1231, 1279, 1398
NlaIV GGNNCC 2 cut(s) 98, 580
NmeAIII GCCGAG 1 cut(s) 1324
OliI CACNNNNGTG 1 cut(s) 1284
PaqCI CACCTGC 1 cut(s) 1339
PceI AGGCCT 1 cut(s) 415
PciSI GCTCTTC 1 cut(s) 638
PcsI WCGNNNNNNNCGW 1 cut(s) 582
PdiI GCCGGC 2 cut(s) 328, 583
PdmI GAANNNNTTC 2 cut(s) 27, 937
PfeI GAWTC 5 cut(s) 530, 573, 779, 1291, 1306
PflMI CCANNNNNTGG 1 cut(s) 93
PleI GAGTC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 564
PsiI TTATAA 1 cut(s) 1125
Psp124BI GAGCTC 1 cut(s) 723
Psp6I CCWGG 2 cut(s) 404, 410
PspFI CCCAGC 1 cut(s) 300
PspGI CCWGG 2 cut(s) 404, 410
PspN4I GGNNCC 2 cut(s) 98, 580
PspPI GGNCC 3 cut(s) 329, 408, 1389
PstI CTGCAG 4 cut(s) 541, 620, 639, 1286
PstNI CAGNNNCTG 1 cut(s) 715
PvuII CAGCTG 2 cut(s) 1326, 1336
RigI GGCCGGCC 1 cut(s) 330
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
RseI CAYNNNNRTG 1 cut(s) 1284
SacI GAGCTC 1 cut(s) 723
SapI GCTCTTC 1 cut(s) 638
SaqAI TTAA 4 cut(s) 831, 894, 948, 1242
Sau3AI GATC 2 cut(s) 265, 901
Sau96I GGNCC 3 cut(s) 329, 408, 1389
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 4 cut(s) 406, 412, 481, 1065
SduI GDGCHC 2 cut(s) 723, 1323
SfaNI GCATC 5 cut(s) 402, 993, 1163, 1363, 1405
SfcI CTRYAG 4 cut(s) 537, 616, 635, 1282
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 1284
SpeI ACTAGT 1 cut(s) 25
Sse9I AATT 9 cut(s) 499, 772, 833, 871, 925, 1025, 1039, 1090, 1100
SseBI AGGCCT 1 cut(s) 415
SspMI CTAG 2 cut(s) 26, 281
SstI GAGCTC 1 cut(s) 723
StuI AGGCCT 1 cut(s) 415
StyD4I CCNGG 4 cut(s) 404, 410, 479, 1063
StyI CCWWGG 1 cut(s) 1227
TaaI ACNGT 2 cut(s) 73, 462
TaqI TCGA 5 cut(s) 744, 877, 888, 1020, 1235
TasI AATT 9 cut(s) 499, 772, 833, 871, 925, 1025, 1039, 1090, 1100
TauI GCSGC 3 cut(s) 245, 1379, 1412
TfiI GAWTC 5 cut(s) 530, 573, 779, 1291, 1306
Tru1I TTAA 4 cut(s) 831, 894, 948, 1242
Tru9I TTAA 4 cut(s) 831, 894, 948, 1242
TscAI CASTG 3 cut(s) 1038, 1286, 1291
TseI GCWGC 7 cut(s) 49, 309, 536, 615, 813, 1004, 1326
TspDTI ATGAA 2 cut(s) 36, 1158
TspGWI ACGGA 2 cut(s) 435, 1385
TspRI CASTG 3 cut(s) 1038, 1286, 1291
Van91I CCANNNNNTGG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 408
XapI RAATTY 3 cut(s) 833, 925, 1090
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XmnI GAANNNNTTC 2 cut(s) 27, 937
XspI CTAG 2 cut(s) 26, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.