Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010411

Physical Location & Seq

Genomic Coordinates Forward (+)

79390860 .. 79393143

Gene Structure 2284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG618700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGGACAAGTTGCTTTGTGATGAACTTGTACAAGAAATCTTCTTGAGACTGCCACCACCTTCTTCCTCCTCTGTTTCTCTGGTCTCCAAGCGCTGGCTTCACCTCCTCCGCACCTCCAGAACCTCTCTCACTCTCCGCCTCACCGGAGACGATTCCACAGTCGCTTCTCTCTCCTCCCTCCTCTCTCACTACCCTTTCCTCTCTTGCCTCTCTATTCTGTTATCTGATCCCAGAGCCAAGACCACTCTGGCTGATCAGCTCCTCCTGTTGGTCTGTACCTTCTGTGCTCAGCTACTCAGCCTCAGGTTCTTGGCTGGTCCCGTTTCTGTGTCCTCCCTCAATTCTCTCTCTACAGCATGTACCCAACTCACCTCTCTGTGTATCAGTCTCTCCAGGCCTCTCTTCCTCATGTGGATCATCAGTTTTCCGAAGTTGAAAGAATTGTCAATCATGGTCTGCTCTGGGGAAATTGGGGTTGAACGAGGAAATGATTATGGTGTTTTTGCAGGTGAGGATACTGATGCAGAATTGGGTGTAGAGAGTCTGTGTTTATCTGGGATTGGAGCTGGTGATGGGGGATTGGGCTGGCTTTGGAGGAGCTGTAGAAAGCTGAAGAAATTGCAGCTCAAGAGCTGTGAGGGAGTTGGGGATGGGGGCTCTTTTTCGTCATTTATTATGTGCTTGCAGGGTGTTCAAGAAGTGGAGCTCAGGACTTGTAGGAGTATACTCGATGAGGTTCTGTTGAAATTGGCCGAAAATTGTGATTCTCTGACTTCTCTTTTGGTTTATGATGGTGGTAGCAGGGAGGGTCTGCTCAGGTTCTTTAGCCAATGCCGTTGCAATTTGCAAAAACTCGATTTTCGATTGCCTCTTGACCTTAAGAATGATCATCTATTGGCTGTTGCTACCAACTACAGAAGCCTTTCAAGTATTAGGCTTCAGAGTTGCTGTCTTGTCAGTGGTGAAGGCCTAAAGGCACTCGGGGCTGCTGTGAGTTCTCGCCTCGAAGAATTGGCACTAATAAACTGTGATGTGGTTGAAAGGGAACCGGGGTTGCTGTCCACGTTAGGACAGAATTTGAGGAAACTGAGGAAATTGGATTTGTCGTACAATGAATTGTTGCTTGACAAGGAATTCATGTCGATGCTAGTTTCGTGTAACTATTTGGTTGATTTGAGGGTGAGAGGGTGCAAAAGGCTTACTAATGCATCCATCATTTCTATGTTAAAGAGCTGTAAATGTTTGGAGAGTGTTGATATTATGCACTGTGGTGGGATTCAGGCTGAAGCAGTCGAGTCTTTCGTTCTGAACTCTCCTCAGCTGAGACGGGTACAGGTGGAACAAAGCAAGATATCAGATGTTGCAAAGACATGGGCCTCACATAAGTTCATTGAAGCTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

468

Amino Acids

51.37

Weight (kDa)

7.35

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40470
fragaria_vesca	FvH4_6g51200 FvH4_6g51200 FvH4_6g51200 FvH4_6g51200
malus_domestica	MD09G1027100.v1.1 MD17G1027100.v1.1
prunus_persica	Prupe.3G291600_v2.0.a1
pyrus_communis	pycom111g02120 pycom17g02220
rosa_chinensis	RchiOBHm_Chr2g0172801
rosa_laevigata	RLG00000022136
rosa_multiflora	Rmu_co8170410.1_g000001 Rmu_sc0002979.1_g000011
rosa_roxburghii	Rroxscaffold_2G00079500
rosa_rugosa	Rorug02G0561800
rosa_samantha	Rh2AG639500 Rh2BG652900 Rh2CG618700 Rh2DG666600
rosa_wichuraiana	Rw2G052790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	497
Acc36I	ACCTGC	1 cut(s)	497
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	724
AciI	CCGC	2 cut(s)	109, 136
AclWI	GGATC	2 cut(s)	221, 422
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	2 cut(s)	1075, 1133
AcuI	CTGAAG	3 cut(s)	632, 923, 1305
AfaI	GTAC	5 cut(s)	30, 277, 361, 1109, 1332
AfeI	AGCGCT	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	93, 268
AflII	CTTAAG	1 cut(s)	878
AgsI	TTSAA	7 cut(s)	436, 479, 695, 745, 927, 1040, 1394
AjnI	CCWGG	1 cut(s)	392
AleI	CACNNNNGTG	1 cut(s)	1269
Alw21I	GWGCWC	2 cut(s)	289, 708
Alw26I	GTCTC	5 cut(s)	40, 88, 141, 392, 1318
AlwI	GGATC	2 cut(s)	221, 422
Ama87I	CYCGRG	1 cut(s)	980
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	4 cut(s)	395, 750, 967, 1374
ApeKI	GCWGC	2 cut(s)	622, 986
ApoI	RAATTY	2 cut(s)	1075, 1133
ArsI	GACNNNNNNTTYG	2 cut(s)	763, 795
Asp700I	GAANNNNTTC	1 cut(s)	922
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	317, 1374
AsuC2I	CCSGG	1 cut(s)	1050
AsuHPI	GGTGA	7 cut(s)	92, 133, 361, 521, 581, 974, 1192
AvaI	CYCGRG	1 cut(s)	980
AvaII	GGWCC	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	302
BanII	GRGCYC	2 cut(s)	659, 708
Bbv12I	GWGCWC	2 cut(s)	289, 708
BbvCI	CCTCAGC	1 cut(s)	1317
BbvI	GCAGC	2 cut(s)	634, 973
BccI	CCATC	4 cut(s)	566, 644, 785, 1220
BceAI	ACGGC	1 cut(s)	819
BciT130I	CCWGG	1 cut(s)	394
BciVI	GTATCC	1 cut(s)	508
BclI	TGATCA	2 cut(s)	253, 886
BcnI	CCSGG	1 cut(s)	1050
BcoDI	GTCTC	5 cut(s)	40, 88, 141, 392, 1318
BfaI	CTAG	1 cut(s)	1148
BfmI	CTRYAG	3 cut(s)	351, 601, 913
BfoI	RGCGCY	1 cut(s)	94
BfrI	CTTAAG	1 cut(s)	878
BfuAI	ACCTGC	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	508
BisI	GCNGC	2 cut(s)	623, 987
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	2 cut(s)	624, 988
Bme1390I	CCNGG	2 cut(s)	394, 1050
Bme18I	GGWCC	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	980
BmgT120I	GGNCC	2 cut(s)	317, 1374
BmiI	GGNNCC	2 cut(s)	319, 1047
BmrFI	CCNGG	2 cut(s)	394, 1050
BmsI	GCATC	3 cut(s)	511, 1134, 1217
BpmI	CTGGAG	2 cut(s)	100, 376
Bpu10I	CCTNAGC	3 cut(s)	707, 815, 1317
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	64, 611
BpuMI	CCSGG	1 cut(s)	1050
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	1049
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	586, 616
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 268
Bse21I	CCTNAGG	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	1 cut(s)	1049
BseGI	GGATG	2 cut(s)	655, 1208
BseLI	CCNNNNNNNGG	2 cut(s)	93, 268
BseMII	CTCAG	8 cut(s)	302, 310, 316, 721, 829, 1079, 1313, 1331
BseRI	GAGGAG	7 cut(s)	58, 95, 163, 170, 251, 610, 1305
BseXI	GCAGC	2 cut(s)	634, 973
BshFI	GGCC	4 cut(s)	397, 752, 969, 1376
BsiHKAI	GWGCWC	2 cut(s)	289, 708
BsiHKCI	CYCGRG	1 cut(s)	980
BsiSI	CCGG	2 cut(s)	144, 1049
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	93, 268
BsmAI	GTCTC	5 cut(s)	40, 88, 141, 392, 1318
BsmBI	CGTCTC	2 cut(s)	141, 1318
BsmFI	GGGAC	1 cut(s)	303
BsnI	GGCC	4 cut(s)	397, 752, 969, 1376
Bso31I	GGTCTC	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	980
Bsp1286I	GDGCHC	3 cut(s)	289, 659, 708
Bsp1407I	TGTACA	1 cut(s)	28
Bsp143I	GATC	4 cut(s)	226, 253, 414, 886
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	2 cut(s)	109, 136
BspANI	GGCC	4 cut(s)	397, 752, 969, 1376
BspCNI	CTCAG	8 cut(s)	301, 309, 315, 720, 828, 1080, 1314, 1330
BspLI	GGNNCC	2 cut(s)	319, 1047
BspMI	ACCTGC	1 cut(s)	497
BspPI	GGATC	2 cut(s)	221, 422
BspTI	CTTAAG	1 cut(s)	878
BspTNI	GGTCTC	1 cut(s)	88
BsrGI	TGTACA	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	1049
BssMI	GATC	4 cut(s)	226, 253, 414, 886
BssNAI	GTATAC	1 cut(s)	725
Bst1107I	GTATAC	1 cut(s)	725
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	3 cut(s)	160, 1028, 1268
Bst6I	CTCTTC	1 cut(s)	407
BstAFI	CTTAAG	1 cut(s)	878
BstAUI	TGTACA	1 cut(s)	28
BstC8I	GCNNGC	3 cut(s)	95, 587, 683
BstDEI	CTNAG	8 cut(s)	288, 296, 302, 707, 815, 1088, 1317, 1322
BstF5I	GGATG	2 cut(s)	655, 1208
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	4 cut(s)	229, 256, 417, 889
BstMAI	GTCTC	5 cut(s)	40, 88, 141, 392, 1318
BstMBI	GATC	4 cut(s)	226, 253, 414, 886
BstMWI	GCNNNNNNNGC	1 cut(s)	983
BstNI	CCWGG	1 cut(s)	394
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	2 cut(s)	392, 1048
BstSFI	CTRYAG	3 cut(s)	351, 601, 913
BstV1I	GCAGC	2 cut(s)	634, 973
BstZ17I	GTATAC	1 cut(s)	725
Bsu36I	CCTNAGG	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	4 cut(s)	397, 752, 969, 1376
BtsCI	GGATG	2 cut(s)	655, 1208
BtsIMutI	CAGTG	2 cut(s)	964, 1264
BveI	ACCTGC	1 cut(s)	497
Cac8I	GCNNGC	3 cut(s)	95, 587, 683
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	317, 1374
Csp6I	GTAC	5 cut(s)	29, 276, 360, 1108, 1331
CviAII	CATG	5 cut(s)	357, 409, 451, 1138, 1371
CviQI	GTAC	5 cut(s)	29, 276, 360, 1108, 1331
DdeI	CTNAG	8 cut(s)	288, 296, 302, 707, 815, 1088, 1317, 1322
DpnI	GATC	4 cut(s)	228, 255, 416, 888
DpnII	GATC	4 cut(s)	226, 253, 414, 886
EaeI	YGGCCR	1 cut(s)	750
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
EciI	GGCGGA	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	706
Eco147I	AGGCCT	2 cut(s)	397, 969
Eco24I	GRGCYC	2 cut(s)	659, 708
Eco31I	GGTCTC	1 cut(s)	88
Eco32I	GATATC	1 cut(s)	1353
Eco47I	GGWCC	1 cut(s)	317
Eco47III	AGCGCT	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	706
Eco57I	CTGAAG	3 cut(s)	632, 923, 1305
Eco81I	CCTNAGG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	980
EcoICRI	GAGCTC	1 cut(s)	706
EcoRI	GAATTC	1 cut(s)	1133
EcoRII	CCWGG	1 cut(s)	392
EcoRV	GATATC	1 cut(s)	1353
EcoT22I	ATGCAT	1 cut(s)	1210
EcoT38I	GRGCYC	2 cut(s)	659, 708
Esp3I	CGTCTC	2 cut(s)	141, 1318
FaeI	CATG	5 cut(s)	360, 412, 454, 1141, 1374
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	5 cut(s)	356, 408, 450, 1137, 1370
FbaI	TGATCA	2 cut(s)	253, 886
FblI	GTMKAC	1 cut(s)	724
Fnu4HI	GCNGC	2 cut(s)	623, 987
FokI	GGATG	2 cut(s)	662, 1195
FriOI	GRGCYC	2 cut(s)	659, 708
Fsp4HI	GCNGC	2 cut(s)	623, 987
FspBI	CTAG	1 cut(s)	1148
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	2 cut(s)	623, 987
GsuI	CTGGAG	2 cut(s)	100, 376
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	4 cut(s)	397, 752, 969, 1376
HapII	CCGG	2 cut(s)	144, 1049
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	5 cut(s)	360, 412, 454, 1141, 1374
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	5 cut(s)	152, 541, 764, 1276, 1295
HpaII	CCGG	2 cut(s)	144, 1049
HphI	GGTGA	7 cut(s)	92, 133, 361, 521, 581, 974, 1192
Hpy166II	GTNNAC	2 cut(s)	725, 1062
Hpy188I	TCNGA	6 cut(s)	226, 429, 771, 942, 1308, 1357
Hpy188III	TCNNGA	6 cut(s)	43, 117, 628, 695, 709, 872
Hpy8I	GTNNAC	2 cut(s)	725, 1062
HpyAV	CCTTC	3 cut(s)	69, 289, 959
HpyCH4III	ACNGT	3 cut(s)	160, 1028, 1268
HpyCH4IV	ACGT	1 cut(s)	1064
HpyF10VI	GCNNNNNNNGC	1 cut(s)	983
HpyF3I	CTNAG	8 cut(s)	288, 296, 302, 707, 815, 1088, 1317, 1322
HpySE526I	ACGT	1 cut(s)	1064
Hsp92II	CATG	5 cut(s)	360, 412, 454, 1141, 1374
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	2 cut(s)	253, 886
Kzo9I	GATC	4 cut(s)	226, 253, 414, 886
LmnI	GCTCC	4 cut(s)	264, 563, 597, 703
Lsp1109I	GCAGC	2 cut(s)	634, 973
LweI	GCATC	3 cut(s)	511, 1134, 1217
MaeI	CTAG	1 cut(s)	1148
MaeII	ACGT	1 cut(s)	1064
MaeIII	GTNAC	1 cut(s)	1157
MalI	GATC	4 cut(s)	228, 255, 416, 888
MboI	GATC	4 cut(s)	226, 253, 414, 886
MboII	GAAGA	5 cut(s)	31, 54, 394, 625, 1019
MhlI	GDGCHC	3 cut(s)	289, 659, 708
MlyI	GAGTC	2 cut(s)	550, 1304
Mph1103I	ATGCAT	1 cut(s)	1210
MroXI	GAANNNNTTC	1 cut(s)	922
MseI	TTAA	2 cut(s)	879, 1226
MslI	CAYNNNNRTG	3 cut(s)	1142, 1220, 1269
MspA1I	CMGCKG	1 cut(s)	1321
MspCI	CTTAAG	1 cut(s)	878
MspI	CCGG	2 cut(s)	144, 1049
MspR9I	CCNGG	2 cut(s)	394, 1050
MvaI	CCWGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	1 cut(s)	983
NciI	CCSGG	1 cut(s)	1050
NdeII	GATC	4 cut(s)	226, 253, 414, 886
NlaIII	CATG	5 cut(s)	360, 412, 454, 1141, 1374
NlaIV	GGNNCC	2 cut(s)	319, 1047
NsiI	ATGCAT	1 cut(s)	1210
NspI	RCATGY	1 cut(s)	360
OliI	CACNNNNGTG	1 cut(s)	1269
PaqCI	CACCTGC	1 cut(s)	497
PceI	AGGCCT	2 cut(s)	397, 969
PcsI	WCGNNNNNNNCGW	1 cut(s)	1299
PdmI	GAANNNNTTC	1 cut(s)	922
PfeI	GAWTC	3 cut(s)	152, 764, 1276
PflMI	CCANNNNNTGG	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	624, 988
PleI	GAGTC	2 cut(s)	549, 1303
PpsI	GAGTC	2 cut(s)	549, 1303
Psp124BI	GAGCTC	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	319, 1047
PspPI	GGNCC	2 cut(s)	317, 1374
PvuII	CAGCTG	1 cut(s)	1321
RsaI	GTAC	5 cut(s)	30, 277, 361, 1109, 1332
RsaNI	GTAC	5 cut(s)	29, 276, 360, 1108, 1331
RseI	CAYNNNNRTG	3 cut(s)	1142, 1220, 1269
SacI	GAGCTC	1 cut(s)	708
SaqAI	TTAA	2 cut(s)	879, 1226
SatI	GCNGC	2 cut(s)	623, 987
Sau3AI	GATC	4 cut(s)	226, 253, 414, 886
Sau96I	GGNCC	2 cut(s)	317, 1374
SchI	GAGTC	2 cut(s)	550, 1304
ScrFI	CCNGG	2 cut(s)	394, 1050
SduI	GDGCHC	3 cut(s)	289, 659, 708
SfaNI	GCATC	3 cut(s)	511, 1134, 1217
SfcI	CTRYAG	3 cut(s)	351, 601, 913
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	3 cut(s)	1142, 1220, 1269
SmlI	CTYRAG	3 cut(s)	43, 626, 878
SmoI	CTYRAG	3 cut(s)	43, 626, 878
SseBI	AGGCCT	2 cut(s)	397, 969
SsiI	CCGC	2 cut(s)	109, 136
SspMI	CTAG	1 cut(s)	1148
SstI	GAGCTC	1 cut(s)	708
StuI	AGGCCT	2 cut(s)	397, 969
StyD4I	CCNGG	2 cut(s)	392, 1048
TaaI	ACNGT	3 cut(s)	160, 1028, 1268
TaiI	ACGT	1 cut(s)	1067
TaqI	TCGA	6 cut(s)	729, 855, 862, 1005, 1142, 1293
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	3 cut(s)	152, 764, 1276
Tru1I	TTAA	2 cut(s)	879, 1226
Tru9I	TTAA	2 cut(s)	879, 1226
TscAI	CASTG	2 cut(s)	964, 1271
TseI	GCWGC	2 cut(s)	622, 986
TspDTI	ATGAA	4 cut(s)	36, 1126, 1128, 1378
TspRI	CASTG	2 cut(s)	964, 1271
Van91I	CCANNNNNTGG	1 cut(s)	93
Vha464I	CTTAAG	1 cut(s)	878
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	2 cut(s)	1075, 1133
XceI	RCATGY	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	724
XmnI	GAANNNNTTC	1 cut(s)	922
XspI	CTAG	1 cut(s)	1148
Zsp2I	ATGCAT	1 cut(s)	1210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.