Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8170410.1

Orthogroup ID

OG0010411

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 408

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8170410.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atggacaagttgctttgtgatgaacttgtacaagaaatcttcttgagactgccaccaccttcttcctcctctgtttctctcgtctccaagcgctggcttcacctcctccgcacctccagaacctctctcactctccgcctcaccggagacgattccacagtcgcttctctctcctccctcctctctcactaccctttcctctcttgcctctctattctgttatctgatcccagagccaagaccactctggctgatcagctcctcctgttggtctgtaccttctgtgctcagctactcagcctcaggttcttggctggtccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

107

Amino Acids

11.82

Weight (kDa)

8.48

Isoelectric Point (pI)

64.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40470
fragaria_vesca	FvH4_6g51200 FvH4_6g51200 FvH4_6g51200 FvH4_6g51200
malus_domestica	MD09G1027100.v1.1 MD17G1027100.v1.1
prunus_persica	Prupe.3G291600_v2.0.a1
pyrus_communis	pycom111g02120 pycom17g02220
rosa_chinensis	RchiOBHm_Chr2g0172801
rosa_laevigata	RLG00000022136
rosa_multiflora	Rmu_co8170410.1_g000001 Rmu_sc0002979.1_g000011
rosa_roxburghii	Rroxscaffold_2G00079500
rosa_rugosa	Rorug02G0561800
rosa_samantha	Rh2AG639500 Rh2BG652900 Rh2CG618700 Rh2DG666600
rosa_wichuraiana	Rw2G052790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	93
AciI	CCGC	2 cut(s)	109, 136
AclWI	GGATC	1 cut(s)	221
AfaI	GTAC	2 cut(s)	30, 277
AfeI	AGCGCT	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	93, 268
AluBI	AGCT	2 cut(s)	259, 292
AluI	AGCT	2 cut(s)	259, 292
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	3 cut(s)	40, 88, 141
AlwI	GGATC	1 cut(s)	221
Aor51HI	AGCGCT	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	92, 133
AvaII	GGWCC	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	289
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	3 cut(s)	40, 88, 141
BfoI	RGCGCY	1 cut(s)	94
BlpI	GCTNAGC	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	100
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 268
Bse21I	CCTNAGG	1 cut(s)	302
BseLI	CCNNNNNNNGG	2 cut(s)	93, 268
BseMII	CTCAG	3 cut(s)	302, 310, 316
BseRI	GAGGAG	5 cut(s)	58, 95, 163, 170, 251
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	93, 268
BsmAI	GTCTC	3 cut(s)	40, 88, 141
BsmBI	CGTCTC	2 cut(s)	88, 141
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	226, 253
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	2 cut(s)	109, 136
BspCNI	CTCAG	3 cut(s)	301, 309, 315
BspPI	GGATC	1 cut(s)	221
BsrGI	TGTACA	1 cut(s)	28
BssMI	GATC	2 cut(s)	226, 253
Bst4CI	ACNGT	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	3 cut(s)	288, 296, 302
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	2 cut(s)	229, 256
BstMAI	GTCTC	3 cut(s)	40, 88, 141
BstMBI	GATC	2 cut(s)	226, 253
Bsu36I	CCTNAGG	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	29, 276
CviJI	RGCY	7 cut(s)	97, 236, 251, 259, 292, 300, 314
CviKI_1	RGCY	7 cut(s)	97, 236, 251, 259, 292, 300, 314
CviQI	GTAC	2 cut(s)	29, 276
DdeI	CTNAG	3 cut(s)	288, 296, 302
DpnI	GATC	2 cut(s)	228, 255
DpnII	GATC	2 cut(s)	226, 253
EciI	GGCGGA	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	317
Eco47III	AGCGCT	1 cut(s)	92
Eco81I	CCTNAGG	1 cut(s)	302
Esp3I	CGTCTC	2 cut(s)	88, 141
FbaI	TGATCA	1 cut(s)	253
GlaI	GCGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	100
HaeII	RGCGCY	1 cut(s)	94
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	93
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	92, 133
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	2 cut(s)	43, 117
HpyAV	CCTTC	2 cut(s)	69, 289
HpyCH4III	ACNGT	1 cut(s)	160
HpyF3I	CTNAG	3 cut(s)	288, 296, 302
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	226, 253
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	8 cut(s)	79, 130, 157, 233, 244, 278, 289, 300
MalI	GATC	2 cut(s)	228, 255
MboI	GATC	2 cut(s)	226, 253
MboII	GAAGA	2 cut(s)	31, 54
MhlI	GDGCHC	1 cut(s)	289
MspI	CCGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	226, 253
PfeI	GAWTC	1 cut(s)	152
PflMI	CCANNNNNTGG	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	317
RsaI	GTAC	2 cut(s)	30, 277
RsaNI	GTAC	2 cut(s)	29, 276
Sau3AI	GATC	2 cut(s)	226, 253
Sau96I	GGNCC	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	8 cut(s)	61, 105, 116, 125, 261, 281, 294, 308
SinI	GGWCC	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
SsiI	CCGC	2 cut(s)	109, 136
TaaI	ACNGT	1 cut(s)	160
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	36
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.