Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010411

Physical Location & Seq

Genomic Coordinates Forward (+)

37982099 .. 37984127

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g51200.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGATAATTTGCTTTGTGATGAACTTGTACAAGAAGTCTTCCTAAGACTGCCACCATCTTCATCTTCCTCTGTTTCTCTGGTCTCCAAGCGCTGGCTTCACCTCCACCGCACCTCCAGAACCTCTCTCACTCTCCGTCTCACCGGAGACGATTCCACACTTCACAGCCTCAGGTTCTTTGCTGGTCCAGTTTCTGCGTCCTCCCTCTCTTCTCTCTCTGCAGCATGTACCCAGCTAACCTCTCTATGTATCAGCCTCTCCAGGCCCCTCTTCCTCATGTGGATCATCGGTTTTCCGAAATTGAAGGAATTGTCAATCATGGTGTGCTCTGGGGGAGTTGGGGTTGAACAAGGAAATGATTATGGGGTTTCTGCAGATGAGGATTCTGGTGCTGAATTGGGTTTAGAGAGTCTTTGTTTATCTGGGATTGGAGCTGGTGATTGGGGATTGGGTTGGCTTTGGAGGAGCTGTAGAAAGCTGAAGAAGTTGCAGCTGAAGAGCTGTGAGGGAGTTGGGGATGGAGGCTCTTTTTCGTCATTCATTATGTGCTTGCAGGGTGTTGAAGAAGTGGAGCTCAGGACTTGTAGGAGTATACTTGATGGGGTTCTGTTGAAATTGGCCGAAAATTGTGATTCTCTGGCTTCTCTTTTGATTTATGATGGTGGTAGCAGGGAGGGTCTGCTCAGGTTCTTTAGCCAATGCCATTGTAATTTGCAAAAACTTGATTTTCGATTGCCTCTTGACCTTAAGAATGATCATCTATTGGCTGTTGCTACGAATTTCAGAAGCCTTTCAAGTCTTAGGCTTCAGAGTTGTTGTCTTGTTAGTGGTGAAGGCCTAAAGGCACTTGGGACTGCTGTGAATTCTGGCCTTGAAGAATTGGCACTAATAAACTGTGATGTTGTTGAAAGGGAACCAGGGTTGCTGTCCACATTGGGACAGAATTTGAAGAAACTCAAGAAATTGGATTTGTCATACAACGAAATGTTGTTTGACAAGGAATTCATGTCAATGCTAGTTTCGTGTAAGTATTTGGTTGATTTGAAGGTGAGAGGGTGTAAAGGGCTTACTAATGCATCCATCATTTCTATGTTGAAGAGCTGTAAACGTTTGGAGAGTGTTGATATCATGCACTGTCATGGGATTCAGGCTGAAGCCATTGAATCTTTTGTTCTGAACTCTCCTCAGCTGAGACGGGTACAGGTGGAGCAATGCAAGATATCAGATTTTGCAAAGACATGGGCATCGCATAAGTTCGTTGAAGCTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

425

Amino Acids

46.44

Weight (kDa)

6.71

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40470
fragaria_vesca	FvH4_6g51200 FvH4_6g51200 FvH4_6g51200 FvH4_6g51200
malus_domestica	MD09G1027100.v1.1 MD17G1027100.v1.1
prunus_persica	Prupe.3G291600_v2.0.a1
pyrus_communis	pycom111g02120 pycom17g02220
rosa_chinensis	RchiOBHm_Chr2g0172801
rosa_laevigata	RLG00000022136
rosa_multiflora	Rmu_co8170410.1_g000001 Rmu_sc0002979.1_g000011
rosa_roxburghii	Rroxscaffold_2G00079500
rosa_rugosa	Rorug02G0561800
rosa_samantha	Rh2AG639500 Rh2BG652900 Rh2CG618700 Rh2DG666600
rosa_wichuraiana	Rw2G052790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	592
AciI	CCGC	1 cut(s)	109
AclI	AACGTT	1 cut(s)	1108
AclWI	GGATC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	4 cut(s)	778, 862, 943, 1001
AcuI	CTGAAG	4 cut(s)	500, 515, 791, 1173
AfaI	GTAC	3 cut(s)	30, 229, 1200
AfeI	AGCGCT	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	93
AflII	CTTAAG	1 cut(s)	746
AjnI	CCWGG	2 cut(s)	260, 916
Alw21I	GWGCWC	2 cut(s)	329, 576
Alw26I	GTCTC	4 cut(s)	88, 141, 143, 1186
AlwI	GGATC	1 cut(s)	290
AlwNI	CAGNNNCTG	1 cut(s)	194
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	4 cut(s)	263, 618, 835, 868
ApeKI	GCWGC	2 cut(s)	221, 490
ApoI	RAATTY	4 cut(s)	778, 862, 943, 1001
Asp700I	GAANNNNTTC	1 cut(s)	790
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	185, 264
AsuHPI	GGTGA	5 cut(s)	92, 133, 449, 842, 1060
AvaII	GGWCC	1 cut(s)	185
AxyI	CCTNAGG	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	2 cut(s)	329, 576
BbvCI	CCTCAGC	1 cut(s)	1185
BbvI	GCAGC	2 cut(s)	233, 502
BccI	CCATC	5 cut(s)	64, 512, 593, 653, 1088
BciT130I	CCWGG	2 cut(s)	262, 918
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	4 cut(s)	88, 141, 143, 1186
BfaI	CTAG	1 cut(s)	1016
BfmI	CTRYAG	3 cut(s)	219, 372, 469
BfoI	RGCGCY	1 cut(s)	94
BfrI	CTTAAG	1 cut(s)	746
BisI	GCNGC	2 cut(s)	222, 491
BlsI	GCNGC	2 cut(s)	223, 492
Bme1390I	CCNGG	2 cut(s)	262, 918
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	2 cut(s)	185, 264
BmiI	GGNNCC	2 cut(s)	266, 915
BmrFI	CCNGG	2 cut(s)	262, 918
BmsI	GCATC	2 cut(s)	1085, 1253
BpiI	GAAGAC	1 cut(s)	31
BpmI	CTGGAG	2 cut(s)	100, 244
Bpu10I	CCTNAGC	3 cut(s)	575, 683, 1185
BpuEI	CTTGAG	1 cut(s)	941
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	917
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	6 cut(s)	98, 128, 327, 357, 454, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	188
Bse21I	CCTNAGG	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	1217
BseBI	CCWGG	2 cut(s)	262, 918
BseDI	CCNNGG	1 cut(s)	917
BseGI	GGATG	2 cut(s)	523, 1076
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	1217
BseMII	CTCAG	5 cut(s)	184, 589, 697, 1181, 1199
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	2 cut(s)	478, 1173
BseXI	GCAGC	2 cut(s)	233, 502
BseYI	CCCAGC	1 cut(s)	231
BshFI	GGCC	4 cut(s)	265, 620, 837, 870
BsiHKAI	GWGCWC	2 cut(s)	329, 576
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	865, 951
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	4 cut(s)	88, 141, 143, 1186
BsmBI	CGTCTC	3 cut(s)	141, 143, 1186
BsmFI	GGGAC	2 cut(s)	865, 951
BsnI	GGCC	4 cut(s)	265, 620, 837, 870
Bso31I	GGTCTC	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	329, 576
Bsp1407I	TGTACA	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	282, 754
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	4 cut(s)	265, 620, 837, 870
BspCNI	CTCAG	5 cut(s)	183, 588, 696, 1182, 1198
BspLI	GGNNCC	2 cut(s)	266, 915
BspMAI	CTGCAG	2 cut(s)	223, 376
BspPI	GGATC	1 cut(s)	290
BspQI	GCTCTTC	2 cut(s)	491, 1091
BspTI	CTTAAG	1 cut(s)	746
BspTNI	GGTCTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	1217
BsrGI	TGTACA	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	917
BssMI	GATC	2 cut(s)	282, 754
BssNAI	GTATAC	1 cut(s)	593
Bst1107I	GTATAC	1 cut(s)	593
Bst2UI	CCWGG	2 cut(s)	262, 918
Bst4CI	ACNGT	2 cut(s)	896, 1136
Bst6I	CTCTTC	4 cut(s)	214, 275, 491, 1091
BstAFI	CTTAAG	1 cut(s)	746
BstAUI	TGTACA	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	95, 551
BstDEI	CTNAG	7 cut(s)	44, 170, 575, 683, 800, 1185, 1190
BstF5I	GGATG	2 cut(s)	523, 1076
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	2 cut(s)	285, 757
BstMAI	GTCTC	4 cut(s)	88, 141, 143, 1186
BstMBI	GATC	2 cut(s)	282, 754
BstNI	CCWGG	2 cut(s)	262, 918
BstNSI	RCATGY	1 cut(s)	228
BstSCI	CCNGG	2 cut(s)	260, 916
BstSFI	CTRYAG	3 cut(s)	219, 372, 469
BstV1I	GCAGC	2 cut(s)	233, 502
BstV2I	GAAGAC	1 cut(s)	31
BstZ17I	GTATAC	1 cut(s)	593
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	4 cut(s)	265, 620, 837, 870
BtgZI	GCGATG	1 cut(s)	1230
BtsCI	GGATG	2 cut(s)	523, 1076
BtsIMutI	CAGTG	1 cut(s)	1132
Cac8I	GCNNGC	2 cut(s)	95, 551
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	185, 264
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	3 cut(s)	29, 228, 1199
CviAII	CATG	7 cut(s)	225, 277, 319, 1006, 1129, 1139, 1239
CviQI	GTAC	3 cut(s)	29, 228, 1199
DdeI	CTNAG	7 cut(s)	44, 170, 575, 683, 800, 1185, 1190
DpnI	GATC	2 cut(s)	284, 756
DpnII	GATC	2 cut(s)	282, 754
EaeI	YGGCCR	1 cut(s)	618
Eam1104I	CTCTTC	4 cut(s)	214, 275, 491, 1091
EarI	CTCTTC	4 cut(s)	214, 275, 491, 1091
Ecl136II	GAGCTC	1 cut(s)	574
Eco147I	AGGCCT	1 cut(s)	837
Eco24I	GRGCYC	1 cut(s)	576
Eco31I	GGTCTC	1 cut(s)	88
Eco32I	GATATC	2 cut(s)	1126, 1221
Eco47I	GGWCC	1 cut(s)	185
Eco47III	AGCGCT	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	574
Eco57I	CTGAAG	4 cut(s)	500, 515, 791, 1173
Eco81I	CCTNAGG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	264
EcoRI	GAATTC	2 cut(s)	862, 1001
EcoRII	CCWGG	2 cut(s)	260, 916
EcoRV	GATATC	2 cut(s)	1126, 1221
EcoT22I	ATGCAT	1 cut(s)	1078
EcoT38I	GRGCYC	1 cut(s)	576
Esp3I	CGTCTC	3 cut(s)	141, 143, 1186
FaeI	CATG	7 cut(s)	228, 280, 322, 1009, 1132, 1142, 1242
FaqI	GGGAC	2 cut(s)	865, 951
FatI	CATG	7 cut(s)	224, 276, 318, 1005, 1128, 1138, 1238
FbaI	TGATCA	1 cut(s)	754
FblI	GTMKAC	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	222, 491
FokI	GGATG	2 cut(s)	530, 1063
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	2 cut(s)	222, 491
FspBI	CTAG	1 cut(s)	1016
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	2 cut(s)	222, 491
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	2 cut(s)	100, 244
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	4 cut(s)	265, 620, 837, 870
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	7 cut(s)	228, 280, 322, 1009, 1132, 1142, 1242
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	6 cut(s)	152, 383, 409, 632, 1144, 1163
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	5 cut(s)	92, 133, 449, 842, 1060
Hpy166II	GTNNAC	3 cut(s)	593, 930, 1106
Hpy188I	TCNGA	5 cut(s)	297, 785, 810, 1176, 1225
Hpy188III	TCNNGA	4 cut(s)	117, 577, 740, 958
Hpy8I	GTNNAC	3 cut(s)	593, 930, 1106
HpyAV	CCTTC	3 cut(s)	298, 827, 1039
HpyCH4III	ACNGT	2 cut(s)	896, 1136
HpyCH4IV	ACGT	1 cut(s)	1108
HpyCH4V	TGCA	9 cut(s)	221, 374, 490, 553, 715, 1076, 1132, 1215, 1232
HpyF3I	CTNAG	7 cut(s)	44, 170, 575, 683, 800, 1185, 1190
HpySE526I	ACGT	1 cut(s)	1108
Hsp92II	CATG	7 cut(s)	228, 280, 322, 1009, 1132, 1142, 1242
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	2 cut(s)	282, 754
LguI	GCTCTTC	2 cut(s)	491, 1091
LmnI	GCTCC	4 cut(s)	431, 465, 571, 1207
Lsp1109I	GCAGC	2 cut(s)	233, 502
LweI	GCATC	2 cut(s)	1085, 1253
MaeI	CTAG	1 cut(s)	1016
MaeII	ACGT	1 cut(s)	1108
MalI	GATC	2 cut(s)	284, 756
MboI	GATC	2 cut(s)	282, 754
MhlI	GDGCHC	2 cut(s)	329, 576
MlyI	GAGTC	1 cut(s)	418
Mph1103I	ATGCAT	1 cut(s)	1078
MroXI	GAANNNNTTC	1 cut(s)	790
MseI	TTAA	1 cut(s)	747
MslI	CAYNNNNRTG	3 cut(s)	1010, 1088, 1137
MspA1I	CMGCKG	2 cut(s)	493, 1189
MspCI	CTTAAG	1 cut(s)	746
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	262, 918
MvaI	CCWGG	2 cut(s)	262, 918
NdeII	GATC	2 cut(s)	282, 754
NlaIII	CATG	7 cut(s)	228, 280, 322, 1009, 1132, 1142, 1242
NlaIV	GGNNCC	2 cut(s)	266, 915
NsiI	ATGCAT	1 cut(s)	1078
NspI	RCATGY	1 cut(s)	228
PceI	AGGCCT	1 cut(s)	837
PciSI	GCTCTTC	2 cut(s)	491, 1091
PdmI	GAANNNNTTC	1 cut(s)	790
PfeI	GAWTC	5 cut(s)	152, 383, 632, 1144, 1163
PflMI	CCANNNNNTGG	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	223, 492
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	576
Psp1406I	AACGTT	1 cut(s)	1108
Psp6I	CCWGG	2 cut(s)	260, 916
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	2 cut(s)	260, 916
PspN4I	GGNNCC	2 cut(s)	266, 915
PspPI	GGNCC	2 cut(s)	185, 264
PstI	CTGCAG	2 cut(s)	223, 376
PstNI	CAGNNNCTG	1 cut(s)	194
PvuII	CAGCTG	2 cut(s)	493, 1189
RsaI	GTAC	3 cut(s)	30, 229, 1200
RsaNI	GTAC	3 cut(s)	29, 228, 1199
RseI	CAYNNNNRTG	3 cut(s)	1010, 1088, 1137
SacI	GAGCTC	1 cut(s)	576
SapI	GCTCTTC	2 cut(s)	491, 1091
SaqAI	TTAA	1 cut(s)	747
SatI	GCNGC	2 cut(s)	222, 491
Sau3AI	GATC	2 cut(s)	282, 754
Sau96I	GGNCC	2 cut(s)	185, 264
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	2 cut(s)	262, 918
SduI	GDGCHC	2 cut(s)	329, 576
SfaNI	GCATC	2 cut(s)	1085, 1253
SfcI	CTRYAG	3 cut(s)	219, 372, 469
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	3 cut(s)	1010, 1088, 1137
SmlI	CTYRAG	2 cut(s)	746, 956
SmoI	CTYRAG	2 cut(s)	746, 956
SseBI	AGGCCT	1 cut(s)	837
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	1 cut(s)	1016
SstI	GAGCTC	1 cut(s)	576
StuI	AGGCCT	1 cut(s)	837
StyD4I	CCNGG	2 cut(s)	260, 916
TaaI	ACNGT	2 cut(s)	896, 1136
TaiI	ACGT	1 cut(s)	1111
TaqI	TCGA	1 cut(s)	730
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	5 cut(s)	152, 383, 632, 1144, 1163
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TscAI	CASTG	1 cut(s)	1139
TseI	GCWGC	2 cut(s)	221, 490
TspDTI	ATGAA	4 cut(s)	36, 51, 529, 994
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	1139
Van91I	CCANNNNNTGG	1 cut(s)	93
Vha464I	CTTAAG	1 cut(s)	746
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	4 cut(s)	778, 862, 943, 1001
XceI	RCATGY	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	592
XmnI	GAANNNNTTC	1 cut(s)	790
XspI	CTAG	1 cut(s)	1016
Zsp2I	ATGCAT	1 cut(s)	1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.