Prupe.3G291600_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0010411
Physical Location & Seq
Reverse (-)
26135554 .. 26137153
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G291600.1

Sequence Viewer

Length: 1425 bp
ATGGATAAGTTGCTATGTGATGAACTTGTACAAGAAATCTTCCAAAGACTTCCACCATCAACATCCTCTTCAGTTTCTCTGGTCTCCAAGCGCTGGCTTTACCTCTACCGAACCTCCAAAACCTCCCTCTCTCTCCGCCTTACCCCTCATGATTACACCATCCCTTCTCTGTCCTCCCTTCTCTCTCACTACCCTTTCCTTTCTTCTCTCTCTCTTCTCTTACATCCTGACCCCACCACCACAAAATCAACCACTTTTACTGATCATCTCCTTCTCTTAGTCTCTTCCTTTTGTCCCCAGCTTCACAGCCTGAGGTTTTTGGCTGGTCCTGTCTCCCTCTCCTCTCTCACTTCTCTCTCTGCAGCATGTACCCAACTCACCTATCTGTGTATCAATCTCTCCAGGCCTCTGTTCCTCATGTGGATTCTCAATTTCCCTTCTTTGAAGGAACTGTCAATCTTGGTTTGCTGTGGGGAAGGTCTTGAACAAGCTGTTGATGTCAATACGGAATATGGGTTCTGTGCAGACGACGATTCTGATGCAGAATTGGGTTTGGAAAGTCTTTGTTTATCTGGAATTGGAGCTGATGATTGGGGCTTGGGTTGGCTTTGGAGAAGCTGTAGAAAGCTGAAGAAATTGCAGTTTAGGAGCTGTGAAGGGATTGGTGATGGAGGGTCTTTTTCGTCCTTTGTTAGGTGTTTACAGGGTGTTCAAGAAGTGGAGCTCAGGACTTGTAGGACTATAATTGATGGGGTGCTGGTGAAATTGGCCGAGAATTGCGATTCTCTGACTTCTCTTTTGGTTTATGATGGTGGTAGCAGAGAGGGTCTGCTTAGGTTCTTTAGCCAAAGCCATTGTAACTTGCAAAAACTCGACCTTCGATTACCTCTCGACCTTAAAAATGATCATCTATTGGCTGTCGCAATGAATTTCAGAAGCCTTTCAAGTCTTAAACTTCAAAGCTGCTGTCTTGTCAGTGGTGAAGGCCTCAGGGCTCTTGGGGCCGCCGTGAGTTCTGGCCTTGAAGAATTGGCTCTAGTAAATTGTGATGTGGTTGAAAGAGAACCAGGGTTGTTGTCCACATTAGGACAGAATTTCAGGCAACTGAGGAAATTGGACTTGTCTTATAATGAAATGTTGGTGGACAAAGAGCTCGCATCAATGCTAGTTTCATGTAACTATTTGGTTGATTTGAGGTTGAGAGGATGTAAAGGGCTTACTAATGCAGCCATGGTTTCTGTGTTTAAGAGCTGCAAGTATTTGGAGAATGTTGATATCATTCGCTGTTGTGGGATACAAGCTGAGGCAATTGAGTTTTTTGTTATGAACTCTCCTCAGCTGAGACAGGTGCAGGTCGAGCAAAGCAAGATATCGGATGCTGCAAAGACTTGGGCCTCACGTAAGTTCATTGAGGCTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

475

Amino Acids

52.48

Weight (kDa)

5.89

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1128
Acc36I ACCTGC 1 cut(s) 1342
AccB7I CCANNNNNTGG 1 cut(s) 93
AciI CCGC 2 cut(s) 136, 1005
AcoI YGGCCR 1 cut(s) 768
AcsI RAATTY 2 cut(s) 928, 1093
AcuI CTGAAG 2 cut(s) 54, 650
AfaI GTAC 2 cut(s) 30, 370
AfeI AGCGCT 1 cut(s) 92
AfiI CCNNNNNNNGG 2 cut(s) 93, 693
AgsI TTSAA 7 cut(s) 445, 485, 713, 945, 959, 1025, 1058
AjnI CCWGG 2 cut(s) 401, 1066
AloI GAACNNNNNNTCC 2 cut(s) 500, 532
Alw21I GWGCWC 2 cut(s) 726, 1155
Alw26I GTCTC 4 cut(s) 88, 286, 337, 1336
Aor51HI AGCGCT 1 cut(s) 92
AoxI GGCC 6 cut(s) 404, 768, 985, 1002, 1018, 1392
ApeKI GCWGC 5 cut(s) 362, 963, 1226, 1251, 1379
ApoI RAATTY 2 cut(s) 928, 1093
ArsI GACNNNNNNTTYG 4 cut(s) 781, 813, 952, 984
Asp700I GAANNNNTTC 1 cut(s) 940
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 3 cut(s) 326, 1002, 1392
AsuHPI GGTGA 4 cut(s) 370, 677, 772, 992
AvaII GGWCC 1 cut(s) 326
AxyI CCTNAGG 2 cut(s) 311, 989
BanII GRGCYC 3 cut(s) 726, 997, 1155
Bbv12I GWGCWC 2 cut(s) 726, 1155
BbvCI CCTCAGC 2 cut(s) 1302, 1335
BbvI GCAGC 5 cut(s) 374, 950, 1238, 1238, 1366
BccI CCATC 5 cut(s) 64, 167, 662, 743, 803
BceAI ACGGC 1 cut(s) 992
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciT130I CCWGG 2 cut(s) 403, 1068
BciVI GTATCC 1 cut(s) 1287
BclI TGATCA 2 cut(s) 262, 904
BcoDI GTCTC 4 cut(s) 88, 286, 337, 1336
BfaI CTAG 2 cut(s) 1037, 1166
BfmI CTRYAG 2 cut(s) 360, 619
BfoI RGCGCY 1 cut(s) 94
BfuAI ACCTGC 1 cut(s) 1342
BfuI GTATCC 1 cut(s) 1287
BisI GCNGC 6 cut(s) 363, 964, 1005, 1227, 1252, 1380
BlsI GCNGC 6 cut(s) 364, 965, 1006, 1228, 1253, 1381
Bme1390I CCNGG 2 cut(s) 403, 1068
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 3 cut(s) 326, 1002, 1392
BmiI GGNNCC 1 cut(s) 1003
BmrFI CCNGG 2 cut(s) 403, 1068
BmsI GCATC 3 cut(s) 529, 1166, 1366
BpmI CTGGAG 1 cut(s) 385
Bpu10I CCTNAGC 4 cut(s) 725, 833, 1302, 1335
BsaAI YACGTR 1 cut(s) 1400
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 1067, 1230
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 604, 634
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 693
Bse21I CCTNAGG 2 cut(s) 311, 989
Bse3DI GCAATG 1 cut(s) 930
BseBI CCWGG 2 cut(s) 403, 1068
BseDI CCNNGG 2 cut(s) 1067, 1230
BseGI GGATG 5 cut(s) 62, 159, 223, 1211, 1381
BseLI CCNNNNNNNGG 2 cut(s) 93, 693
BseMI GCAATG 1 cut(s) 930
BseMII CTCAG 7 cut(s) 302, 739, 1003, 1097, 1293, 1331, 1349
BseRI GAGGAG 2 cut(s) 331, 1323
BseXI GCAGC 5 cut(s) 374, 950, 1238, 1238, 1366
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 2 cut(s) 543, 1370
BshFI GGCC 6 cut(s) 406, 770, 987, 1004, 1020, 1394
BsiHKAI GWGCWC 2 cut(s) 726, 1155
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 93, 693
BsmAI GTCTC 4 cut(s) 88, 286, 337, 1336
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 6 cut(s) 406, 770, 987, 1004, 1020, 1394
Bso31I GGTCTC 1 cut(s) 88
Bsp1286I GDGCHC 3 cut(s) 726, 997, 1155
Bsp1407I TGTACA 1 cut(s) 28
Bsp143I GATC 2 cut(s) 262, 904
Bsp19I CCATGG 1 cut(s) 1230
BspACI CCGC 2 cut(s) 136, 1005
BspANI GGCC 6 cut(s) 406, 770, 987, 1004, 1020, 1394
BspCNI CTCAG 7 cut(s) 303, 738, 1002, 1098, 1294, 1332, 1348
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 1003
BspMAI CTGCAG 1 cut(s) 364
BspMI ACCTGC 1 cut(s) 1342
BspTNI GGTCTC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 930
BsrGI TGTACA 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 1067, 1230
BssMI GATC 2 cut(s) 262, 904
BssT1I CCWWGG 1 cut(s) 1230
Bst2UI CCWGG 2 cut(s) 403, 1068
Bst4CI ACNGT 1 cut(s) 453
Bst6I CTCTTC 3 cut(s) 73, 219, 289
BstAUI TGTACA 1 cut(s) 28
BstBAI YACGTR 1 cut(s) 1400
BstC8I GCNNGC 2 cut(s) 95, 1155
BstDEI CTNAG 9 cut(s) 277, 311, 725, 833, 989, 1106, 1302, 1335, 1340
BstDSI CCRYGG 1 cut(s) 1230
BstENI CCTNNNNNAGG 1 cut(s) 691
BstF5I GGATG 5 cut(s) 62, 159, 223, 1211, 1381
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 2 cut(s) 265, 907
BstMAI GTCTC 4 cut(s) 88, 286, 337, 1336
BstMBI GATC 2 cut(s) 262, 904
BstMWI GCNNNNNNNGC 2 cut(s) 1001, 1357
BstNI CCWGG 2 cut(s) 403, 1068
BstNSI RCATGY 1 cut(s) 369
BstSCI CCNGG 2 cut(s) 401, 1066
BstSFI CTRYAG 2 cut(s) 360, 619
BstV1I GCAGC 5 cut(s) 374, 950, 1238, 1238, 1366
Bsu36I CCTNAGG 2 cut(s) 311, 989
BsuI GTATCC 1 cut(s) 1287
BsuRI GGCC 6 cut(s) 406, 770, 987, 1004, 1020, 1394
BtgI CCRYGG 1 cut(s) 1230
BtsCI GGATG 5 cut(s) 62, 159, 223, 1211, 1381
BtsIMutI CAGTG 1 cut(s) 982
BveI ACCTGC 1 cut(s) 1342
Cac8I GCNNGC 2 cut(s) 95, 1155
CciI TCATGA 1 cut(s) 148
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 3 cut(s) 326, 1002, 1392
Csp6I GTAC 2 cut(s) 29, 369
CviAII CATG 5 cut(s) 149, 366, 418, 1173, 1231
CviQI GTAC 2 cut(s) 29, 369
DdeI CTNAG 9 cut(s) 277, 311, 725, 833, 989, 1106, 1302, 1335, 1340
DpnI GATC 2 cut(s) 264, 906
DpnII GATC 2 cut(s) 262, 904
EaeI YGGCCR 1 cut(s) 768
Eam1104I CTCTTC 3 cut(s) 73, 219, 289
EarI CTCTTC 3 cut(s) 73, 219, 289
EciI GGCGGA 1 cut(s) 125
Ecl136II GAGCTC 2 cut(s) 724, 1153
Eco130I CCWWGG 1 cut(s) 1230
Eco147I AGGCCT 2 cut(s) 406, 987
Eco24I GRGCYC 3 cut(s) 726, 997, 1155
Eco31I GGTCTC 1 cut(s) 88
Eco32I GATATC 2 cut(s) 1276, 1371
Eco47I GGWCC 1 cut(s) 326
Eco47III AGCGCT 1 cut(s) 92
Eco53kI GAGCTC 2 cut(s) 724, 1153
Eco57I CTGAAG 2 cut(s) 54, 650
Eco81I CCTNAGG 2 cut(s) 311, 989
EcoICRI GAGCTC 2 cut(s) 724, 1153
EcoNI CCTNNNNNAGG 1 cut(s) 691
EcoRII CCWGG 2 cut(s) 401, 1066
EcoRV GATATC 2 cut(s) 1276, 1371
EcoT14I CCWWGG 1 cut(s) 1230
EcoT38I GRGCYC 3 cut(s) 726, 997, 1155
ErhI CCWWGG 1 cut(s) 1230
FaeI CATG 5 cut(s) 152, 369, 421, 1176, 1234
FaqI GGGAC 1 cut(s) 279
FatI CATG 5 cut(s) 148, 365, 417, 1172, 1230
FbaI TGATCA 2 cut(s) 262, 904
Fnu4HI GCNGC 6 cut(s) 363, 964, 1005, 1227, 1252, 1380
FokI GGATG 5 cut(s) 49, 146, 210, 1218, 1388
FriOI GRGCYC 3 cut(s) 726, 997, 1155
Fsp4HI GCNGC 6 cut(s) 363, 964, 1005, 1227, 1252, 1380
FspBI CTAG 2 cut(s) 1037, 1166
GlaI GCGC 1 cut(s) 92
GluI GCNGC 6 cut(s) 363, 964, 1005, 1227, 1252, 1380
GsaI CCCAGC 1 cut(s) 301
GsuI CTGGAG 1 cut(s) 385
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 6 cut(s) 406, 770, 987, 1004, 1020, 1394
HhaI GCGC 1 cut(s) 93
Hin1II CATG 5 cut(s) 152, 369, 421, 1176, 1234
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 3 cut(s) 424, 533, 782
HphI GGTGA 4 cut(s) 370, 677, 772, 992
Hpy166II GTNNAC 3 cut(s) 701, 1080, 1144
Hpy188I TCNGA 4 cut(s) 538, 789, 935, 1375
Hpy188III TCNNGA 7 cut(s) 149, 227, 482, 573, 713, 727, 890
Hpy8I GTNNAC 3 cut(s) 701, 1080, 1144
Hpy99I CGWCG 1 cut(s) 533
HpyAV CCTTC 9 cut(s) 174, 188, 281, 439, 447, 470, 650, 887, 977
HpyCH4III ACNGT 1 cut(s) 453
HpyCH4IV ACGT 1 cut(s) 1399
HpyCH4V TGCA 9 cut(s) 362, 524, 542, 640, 865, 1226, 1254, 1351, 1382
HpyF10VI GCNNNNNNNGC 2 cut(s) 1001, 1357
HpyF3I CTNAG 9 cut(s) 277, 311, 725, 833, 989, 1106, 1302, 1335, 1340
HpySE526I ACGT 1 cut(s) 1399
Hsp92II CATG 5 cut(s) 152, 369, 421, 1176, 1234
HspAI GCGC 1 cut(s) 91
Ksp22I TGATCA 2 cut(s) 262, 904
Kzo9I GATC 2 cut(s) 262, 904
LmnI GCTCC 3 cut(s) 581, 648, 721
Lsp1109I GCAGC 5 cut(s) 374, 950, 1238, 1238, 1366
LweI GCATC 3 cut(s) 529, 1166, 1366
MaeI CTAG 2 cut(s) 1037, 1166
MaeII ACGT 1 cut(s) 1399
MaeIII GTNAC 2 cut(s) 857, 1175
MalI GATC 2 cut(s) 264, 906
MboI GATC 2 cut(s) 262, 904
MboII GAAGA 7 cut(s) 31, 60, 195, 206, 276, 643, 1037
MfeI CAATTG 1 cut(s) 1308
MhlI GDGCHC 3 cut(s) 726, 997, 1155
MroXI GAANNNNTTC 1 cut(s) 940
MseI TTAA 3 cut(s) 897, 951, 1245
MspA1I CMGCKG 1 cut(s) 1339
MspR9I CCNGG 2 cut(s) 403, 1068
MunI CAATTG 1 cut(s) 1308
MvaI CCWGG 2 cut(s) 403, 1068
MwoI GCNNNNNNNGC 2 cut(s) 1001, 1357
NcoI CCATGG 1 cut(s) 1230
NdeII GATC 2 cut(s) 262, 904
NlaIII CATG 5 cut(s) 152, 369, 421, 1176, 1234
NlaIV GGNNCC 1 cut(s) 1003
NmeAIII GCCGAG 1 cut(s) 796
NspI RCATGY 1 cut(s) 369
PagI TCATGA 1 cut(s) 148
PceI AGGCCT 2 cut(s) 406, 987
PdmI GAANNNNTTC 1 cut(s) 940
PfeI GAWTC 3 cut(s) 424, 533, 782
PflMI CCANNNNNTGG 1 cut(s) 93
PkrI GCNGC 6 cut(s) 364, 965, 1006, 1228, 1253, 1381
Ppu21I YACGTR 1 cut(s) 1400
PsiI TTATAA 1 cut(s) 1128
Psp124BI GAGCTC 2 cut(s) 726, 1155
Psp6I CCWGG 2 cut(s) 401, 1066
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 2 cut(s) 401, 1066
PspN4I GGNNCC 1 cut(s) 1003
PspPI GGNCC 3 cut(s) 326, 1002, 1392
PstI CTGCAG 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 1339
RsaI GTAC 2 cut(s) 30, 370
RsaNI GTAC 2 cut(s) 29, 369
SacI GAGCTC 2 cut(s) 726, 1155
SaqAI TTAA 3 cut(s) 897, 951, 1245
SatI GCNGC 6 cut(s) 363, 964, 1005, 1227, 1252, 1380
Sau3AI GATC 2 cut(s) 262, 904
Sau96I GGNCC 3 cut(s) 326, 1002, 1392
ScrFI CCNGG 2 cut(s) 403, 1068
SduI GDGCHC 3 cut(s) 726, 997, 1155
SfaNI GCATC 3 cut(s) 529, 1166, 1366
SfcI CTRYAG 2 cut(s) 360, 619
SinI GGWCC 1 cut(s) 326
SseBI AGGCCT 2 cut(s) 406, 987
SsiI CCGC 2 cut(s) 136, 1005
SspMI CTAG 2 cut(s) 1037, 1166
SstI GAGCTC 2 cut(s) 726, 1155
StuI AGGCCT 2 cut(s) 406, 987
StyD4I CCNGG 2 cut(s) 401, 1066
StyI CCWWGG 1 cut(s) 1230
TaaI ACNGT 1 cut(s) 453
TaiI ACGT 1 cut(s) 1402
TaqI TCGA 4 cut(s) 873, 880, 891, 1356
TatI WGTACW 1 cut(s) 28
TauI GCSGC 1 cut(s) 1007
TfiI GAWTC 3 cut(s) 424, 533, 782
Tru1I TTAA 3 cut(s) 897, 951, 1245
Tru9I TTAA 3 cut(s) 897, 951, 1245
TscAI CASTG 1 cut(s) 982
TseI GCWGC 5 cut(s) 362, 963, 1226, 1251, 1379
TspDTI ATGAA 6 cut(s) 36, 941, 1146, 1161, 1340, 1396
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 1 cut(s) 982
Van91I CCANNNNNTGG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 326
XagI CCTNNNNNAGG 1 cut(s) 691
XapI RAATTY 2 cut(s) 928, 1093
XceI RCATGY 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 940
XspI CTAG 2 cut(s) 1037, 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.