AT5G40530

Hypothetical methyltransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
16234461 .. 16236311
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40530.3

Sequence Viewer

Length: 864 bp
ATGACGACTGAGGAAAATAAAACAAGCAGAAATAGGAAGAGGAAGAGACAGAGAAACCCTAAACCTTCTAAAGAAGAACCTATCGAGACGACACCGAAGAATCAAAACGAGAAAAAGAATCAAAGAGATACCAAAAACCAACAACATGGAGGTTCTTCAGCTCCATCGAAACGACCTAAACCTTCCAATTTCCTCGATGCGCTTAGAGAGAGATTATCTGGTGGGCAATTTAGGATGCTCAATGAGAAACTCTACACTTGCTCTGGAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATATGTATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTTCCTGTTAACTCCATTATTAATTGGCTATTGTCTAATAGCTCTTCTTTAGTTGTGGCTGATTTTGGCTGTGGTGATGCAAGGATTGCTAAAAGTGTGAAGAACAAAGTTTTCTCCTTTGATCTTGTCTCAAAGAACCCCTCTGTTATTGCCTGCGATATGTCAAATACTTCACTTGAGTCTTCATCAGTGGATGTTGCAGTTTTCTGTCTTTCATTAATGGGAACAAACTATTCTAGTTATATCAAAGAAGCACATCGAGTTCTTCGTCCAAGTGGTATGCTTCTTATAGCGGAAGTAAAGAGCAGGTTTGATCCAAACAATGGAGGAGCAGACCCAAAAGACTTTGTGAAAGCCGTTTGTGATCTTGGATTTACTTCGGTTTTAAAGGACTTCTCCAATAAGATGTTCATCTTATTCCATTTCAAGAAAAAGGAGCAGATGAATTCAAATCAGAAGATAATAAAGTGGCCTGAGTTAAAAGCTTGTTTATACAAACGTCGATGA

Protein Analysis

287

Amino Acids

32.76

Weight (kDa)

9.57

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_8 PF05148 68 - 256 2.8e-69 Hypothetical methyltransferase
Methyltransf_11 PF08241 140 - 216 2.2e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011896)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 654
AccB7I CCANNNNNTGG 1 cut(s) 680
AciI CCGC 1 cut(s) 650
AclWI GGATC 2 cut(s) 290, 665
AcsI RAATTY 1 cut(s) 802
AcuI CTGAAG 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 680
AgsI TTSAA 2 cut(s) 784, 807
AjuI GAANNNNNNNTTGG 2 cut(s) 749, 781
AluBI AGCT 5 cut(s) 161, 275, 358, 399, 842
AluI AGCT 5 cut(s) 161, 275, 358, 399, 842
Alw26I GTCTC 3 cut(s) 40, 80, 490
AlwI GGATC 2 cut(s) 290, 665
AoxI GGCC 2 cut(s) 350, 827
ApoI RAATTY 1 cut(s) 802
AseI ATTAAT 2 cut(s) 378, 575
AspLEI GCGC 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 531
BccI CCATC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 698
BcoDI GTCTC 3 cut(s) 40, 80, 490
BfaI CTAG 1 cut(s) 594
BfuAI ACCTGC 1 cut(s) 654
BmsI GCATC 3 cut(s) 187, 225, 424
BpiI GAAGAC 1 cut(s) 531
Bpu10I CCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 554
BsaBI GATNNNNATC 2 cut(s) 315, 767
Bsc4I CCNNNNNNNGG 1 cut(s) 680
Bse8I GATNNNNATC 2 cut(s) 315, 767
BseGI GGATG 2 cut(s) 240, 556
BseJI GATNNNNATC 2 cut(s) 315, 767
BseLI CCNNNNNNNGG 1 cut(s) 680
BseMII CTCAG 2 cut(s) 345, 822
BseRI GAGGAG 1 cut(s) 699
BshFI GGCC 2 cut(s) 352, 829
BslI CCNNNNNNNGG 1 cut(s) 680
BsmAI GTCTC 3 cut(s) 40, 80, 490
BsmBI CGTCTC 1 cut(s) 80
BsnI GGCC 2 cut(s) 352, 829
Bsp143I GATC 4 cut(s) 295, 478, 670, 721
BspACI CCGC 1 cut(s) 650
BspANI GGCC 2 cut(s) 352, 829
BspCNI CTCAG 2 cut(s) 346, 823
BspMI ACCTGC 1 cut(s) 654
BspPI GGATC 2 cut(s) 290, 665
BspQI GCTCTTC 1 cut(s) 406
BssMI GATC 4 cut(s) 295, 478, 670, 721
Bst6I CTCTTC 3 cut(s) 32, 38, 406
BstAPI GCANNNNNTGC 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 511
BstDEI CTNAG 4 cut(s) 9, 203, 354, 831
BstF5I GGATG 2 cut(s) 240, 556
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 4 cut(s) 298, 481, 673, 724
BstMAI GTCTC 3 cut(s) 40, 80, 490
BstMBI GATC 4 cut(s) 295, 478, 670, 721
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstV2I GAAGAC 1 cut(s) 531
BstX2I RGATCY 1 cut(s) 295
BstXI CCANNNNNNTGG 1 cut(s) 146
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 2 cut(s) 352, 829
BtsCI GGATG 2 cut(s) 240, 556
BtsIMutI CAGTG 1 cut(s) 552
BveI ACCTGC 1 cut(s) 654
Cac8I GCNNGC 1 cut(s) 511
CfoI GCGC 1 cut(s) 202
CviAII CATG 1 cut(s) 146
DdeI CTNAG 4 cut(s) 9, 203, 354, 831
DpnI GATC 4 cut(s) 297, 480, 672, 723
DpnII GATC 4 cut(s) 295, 478, 670, 721
DraI TTTAAA 2 cut(s) 289, 744
Eam1104I CTCTTC 3 cut(s) 32, 38, 406
EarI CTCTTC 3 cut(s) 32, 38, 406
Eco57I CTGAAG 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 802
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 1 cut(s) 149
FaiI YATR 8 cut(s) 147, 314, 321, 518, 600, 638, 647, 850
FatI CATG 1 cut(s) 145
FokI GGATG 2 cut(s) 247, 563
FspBI CTAG 1 cut(s) 594
GlaI GCGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 352, 829
HhaI GCGC 1 cut(s) 202
Hin1II CATG 1 cut(s) 149
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 2 cut(s) 273, 840
HinfI GANTC 3 cut(s) 100, 118, 536
HpaI GTTAAC 1 cut(s) 367
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 1 cut(s) 813
Hpy188III TCNNGA 3 cut(s) 85, 264, 784
Hpy8I GTNNAC 1 cut(s) 367
Hpy99I CGWCG 1 cut(s) 861
HpyAV CCTTC 2 cut(s) 75, 192
HpyCH4IV ACGT 1 cut(s) 856
HpyCH4V TGCA 2 cut(s) 437, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 4 cut(s) 9, 203, 354, 831
HpySE526I ACGT 1 cut(s) 856
Hsp92II CATG 1 cut(s) 149
HspAI GCGC 1 cut(s) 200
KspAI GTTAAC 1 cut(s) 367
Kzo9I GATC 4 cut(s) 295, 478, 670, 721
LguI GCTCTTC 1 cut(s) 406
LmnI GCTCC 3 cut(s) 166, 686, 793
LpnPI CCDG 8 cut(s) 204, 249, 309, 366, 375, 523, 649, 843
LweI GCATC 3 cut(s) 187, 225, 424
MaeI CTAG 1 cut(s) 594
MaeII ACGT 1 cut(s) 856
MalI GATC 4 cut(s) 297, 480, 672, 723
MboI GATC 4 cut(s) 295, 478, 670, 721
MflI RGATCY 1 cut(s) 295
MluCI AATT 5 cut(s) 187, 227, 346, 379, 802
MlyI GAGTC 1 cut(s) 545
MnlI CCTC 6 cut(s) 4, 33, 143, 203, 508, 677
MseI TTAA 6 cut(s) 288, 366, 378, 575, 743, 836
MwoI GCNNNNNNNGC 1 cut(s) 443
NdeII GATC 4 cut(s) 295, 478, 670, 721
NlaIII CATG 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 406
PcsI WCGNNNNNNNCGW 1 cut(s) 622
PfeI GAWTC 2 cut(s) 100, 118
PflMI CCANNNNNTGG 1 cut(s) 680
PleI GAGTC 1 cut(s) 544
PpsI GAGTC 1 cut(s) 544
PshBI ATTAAT 2 cut(s) 378, 575
PsuI RGATCY 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 406
SaqAI TTAA 6 cut(s) 288, 366, 378, 575, 743, 836
Sau3AI GATC 4 cut(s) 295, 478, 670, 721
SchI GAGTC 1 cut(s) 545
SfaNI GCATC 3 cut(s) 187, 225, 424
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 5 cut(s) 187, 227, 346, 379, 802
SsiI CCGC 1 cut(s) 650
SspMI CTAG 1 cut(s) 594
TaiI ACGT 1 cut(s) 859
TaqI TCGA 5 cut(s) 84, 167, 195, 616, 859
TasI AATT 5 cut(s) 187, 227, 346, 379, 802
TfiI GAWTC 2 cut(s) 100, 118
Tru1I TTAA 6 cut(s) 288, 366, 378, 575, 743, 836
Tru9I TTAA 6 cut(s) 288, 366, 378, 575, 743, 836
TscAI CASTG 1 cut(s) 552
TspDTI ATGAA 4 cut(s) 531, 561, 757, 815
TspRI CASTG 1 cut(s) 552
Van91I CCANNNNNTGG 1 cut(s) 680
VspI ATTAAT 2 cut(s) 378, 575
XapI RAATTY 1 cut(s) 802
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.