Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011896

Physical Location & Seq

Genomic Coordinates Forward (+)

38257447 .. 38260070

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g51630.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGAAGCAGGCAAAAAGCAGAAGGGGGCGAAGAGGCGTCACAGACCTGCTTCAAATGAGAAACCCAAAGATGAAAGAGTCGGTGGAAACGAAGAAGAGCGAAACCCAAAAGCTTCAAAGCGCAGAAAGTCTCAGGGGATGGTCTCTAATTCCTCCAGTTTCCTCGATAAGATGAAAGCTAAGCTGTCAGGAGGGCATTTCAGAATGCTTAATGAGAAGCTCTACACTTGCACTGGGGAAGAGGCACTTGAGTATTTCAATGACGACCCGACATTGTTTGATACATACCATGCAGGATATCAAGAGCAAATGTCTCATTGGCCTGAGCTGCCTGTGAATATAATCATAAAGTGGCTCAAAGATCGCAGCTCGTCTCTAGTCGTGGCTGATTTTGGATGTGGGGATGCACGCCTTGCAAAGAGTGTGAAGAACAAAGTTCACTCCTTTGATCTCATCTCAAATGAGCCTTCAGTAATTGCTTGTAATATGGCAAATACACCTCTTGGCTCTTCATCTGTAGATGTTGCTGTATTCTGCCTGTCATTGATGGGGACTAATTTCCCAAGTTACCTTAACGAAGCACACAGAATTCTTAAGCCACGTGGCTGGCTTTTGATAGCAGAAGTGAAGAGCAGATTTGATTCCAATACTGGAGGAGCAGACCCAAAGAAGTTCACAAAAGCAGTGTGTGATTTAGGATTTACCTCTGTGGCAAAGGATTTCTCAAATAAGATGTTTATATTGTTTTACTTCAAGAAAAAGGAGGAGCAAAATTCGAAGAAAAAGGATATTGATTGGCCTGAGTTGAAACCTTGTCTGTATAAGCGTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000785 GO:0000792 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016740 GO:0016741 GO:0017053 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0033553 GO:0035064 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0090568 GO:0140030 GO:0140034 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_8

Protein Analysis

278

Amino Acids

31.39

Weight (kDa)

9.44

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_8	PF05148	56 - 238	6.1e-69	Hypothetical methyltransferase
Methyltransf_11	PF08241	121 - 206	1.7e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40530 AT5G40530 AT5G40530 AT5G40530
fragaria_vesca	FvH4_6g51630 FvH4_6g51630 FvH4_6g51630
malus_domestica	MD17G1023500.v1.1
prunus_persica	Prupe.3G293000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0173161
rosa_laevigata	RLG00000022167
rosa_multiflora	Rmu_sc0016793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079150
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646200 Rh2BG656900 Rh2CG622000 Rh2DG670300
rosa_wichuraiana	Rw2G053070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	55
AcsI	RAATTY	2 cut(s)	588, 772
AcuI	CTGAAG	1 cut(s)	453
AcvI	CACGTG	1 cut(s)	602
AcyI	GRCGYC	1 cut(s)	37
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	5 cut(s)	54, 117, 259, 754, 808
AluBI	AGCT	6 cut(s)	113, 179, 184, 220, 328, 369
AluI	AGCT	6 cut(s)	113, 179, 184, 220, 328, 369
Alw26I	GTCTC	4 cut(s)	135, 148, 318, 378
AoxI	GGCC	2 cut(s)	320, 797
ApeKI	GCWGC	2 cut(s)	328, 366
ApoI	RAATTY	2 cut(s)	588, 772
AspLEI	GCGC	1 cut(s)	123
AsuII	TTCGAA	1 cut(s)	776
BbrPI	CACGTG	1 cut(s)	602
BbvI	GCAGC	2 cut(s)	315, 378
BccI	CCATC	2 cut(s)	133, 541
BcoDI	GTCTC	4 cut(s)	135, 148, 318, 378
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	516
BfrI	CTTAAG	1 cut(s)	593
BfuAI	ACCTGC	1 cut(s)	55
BisI	GCNGC	2 cut(s)	329, 367
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	2 cut(s)	330, 368
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	243
BpmI	CTGGAG	2 cut(s)	139, 672
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	776
BpuEI	CTTGAG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	602
BsaHI	GRCGYC	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	148
Bse1I	ACTGG	3 cut(s)	156, 238, 655
BseGI	GGATG	3 cut(s)	144, 401, 409
BseMII	CTCAG	3 cut(s)	146, 315, 792
BseNI	ACTGG	3 cut(s)	156, 238, 655
BseRI	GAGGAG	2 cut(s)	669, 779
BseXI	GCAGC	2 cut(s)	315, 378
BshFI	GGCC	2 cut(s)	322, 799
BslFI	GGGAC	1 cut(s)	565
BsmAI	GTCTC	4 cut(s)	135, 148, 318, 378
BsmBI	CGTCTC	1 cut(s)	378
BsmFI	GGGAC	1 cut(s)	565
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	2 cut(s)	322, 799
Bso31I	GGTCTC	1 cut(s)	148
Bsp119I	TTCGAA	1 cut(s)	776
Bsp143I	GATC	2 cut(s)	361, 448
Bsp1720I	GCTNAGC	1 cut(s)	180
BspANI	GGCC	2 cut(s)	322, 799
BspCNI	CTCAG	3 cut(s)	145, 316, 793
BspMI	ACCTGC	1 cut(s)	55
BspQI	GCTCTTC	3 cut(s)	90, 514, 623
BspT104I	TTCGAA	1 cut(s)	776
BspTI	CTTAAG	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	148
BsrI	ACTGG	3 cut(s)	156, 238, 655
BssMI	GATC	2 cut(s)	361, 448
BssNI	GRCGYC	1 cut(s)	37
Bst6I	CTCTTC	5 cut(s)	26, 90, 234, 514, 623
BstACI	GRCGYC	1 cut(s)	37
BstAFI	CTTAAG	1 cut(s)	593
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	776
BstC8I	GCNNGC	3 cut(s)	10, 409, 608
BstDEI	CTNAG	4 cut(s)	132, 180, 324, 801
BstF5I	GGATG	3 cut(s)	144, 401, 409
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	2 cut(s)	364, 451
BstMAI	GTCTC	4 cut(s)	135, 148, 318, 378
BstMBI	GATC	2 cut(s)	361, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 413
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	315, 378
BstXI	CCANNNNNNTGG	1 cut(s)	606
BsuRI	GGCC	2 cut(s)	322, 799
BtsCI	GGATG	3 cut(s)	144, 401, 409
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	2 cut(s)	231, 690
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	10, 409, 608
CfoI	GCGC	1 cut(s)	123
CseI	GACGC	2 cut(s)	26, 815
CviAII	CATG	1 cut(s)	290
DdeI	CTNAG	4 cut(s)	132, 180, 324, 801
DpnI	GATC	2 cut(s)	363, 450
DpnII	GATC	2 cut(s)	361, 448
Eam1104I	CTCTTC	5 cut(s)	26, 90, 234, 514, 623
EarI	CTCTTC	5 cut(s)	26, 90, 234, 514, 623
Eco31I	GGTCTC	1 cut(s)	148
Eco32I	GATATC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	453
Eco72I	CACGTG	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	588
EcoRV	GATATC	1 cut(s)	299
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	1 cut(s)	293
FaiI	YATR	7 cut(s)	286, 291, 341, 347, 488, 740, 822
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	329, 367
FokI	GGATG	3 cut(s)	151, 408, 416
Fsp4HI	GCNGC	2 cut(s)	329, 367
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	2 cut(s)	329, 367
GsuI	CTGGAG	2 cut(s)	139, 672
HaeIII	GGCC	2 cut(s)	322, 799
HgaI	GACGC	2 cut(s)	26, 815
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	293
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	2 cut(s)	78, 641
Hpy166II	GTNNAC	2 cut(s)	439, 675
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	3 cut(s)	189, 302, 754
Hpy8I	GTNNAC	2 cut(s)	439, 675
Hpy99I	CGWCG	1 cut(s)	831
HpyAV	CCTTC	2 cut(s)	16, 477
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	4 cut(s)	231, 293, 407, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 413
HpyF3I	CTNAG	4 cut(s)	132, 180, 324, 801
HpySE526I	ACGT	1 cut(s)	601
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	293
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	361, 448
LguI	GCTCTTC	3 cut(s)	90, 514, 623
LmnI	GCTCC	2 cut(s)	656, 766
Lsp1109I	GCAGC	2 cut(s)	315, 378
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	2 cut(s)	38, 566
MalI	GATC	2 cut(s)	363, 450
MboI	GATC	2 cut(s)	361, 448
MboII	GAAGA	8 cut(s)	43, 104, 107, 251, 439, 501, 640, 790
MluCI	AATT	5 cut(s)	148, 474, 556, 588, 772
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	9 cut(s)	27, 163, 173, 185, 235, 510, 647, 715, 757
MseI	TTAA	3 cut(s)	210, 573, 594
MspCI	CTTAAG	1 cut(s)	593
Mva1269I	GAATGC	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	328, 413
NdeII	GATC	2 cut(s)	361, 448
NlaIII	CATG	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	38
NspV	TTCGAA	1 cut(s)	776
PciSI	GCTCTTC	3 cut(s)	90, 514, 623
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PctI	GAATGC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	641
PkrI	GCNGC	2 cut(s)	330, 368
PleI	GAGTC	1 cut(s)	86
PmaCI	CACGTG	1 cut(s)	602
PmlI	CACGTG	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	602
PspCI	CACGTG	1 cut(s)	602
SapI	GCTCTTC	3 cut(s)	90, 514, 623
SaqAI	TTAA	3 cut(s)	210, 573, 594
SatI	GCNGC	2 cut(s)	329, 367
Sau3AI	GATC	2 cut(s)	361, 448
SchI	GAGTC	1 cut(s)	87
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	516
SfuI	TTCGAA	1 cut(s)	776
SmlI	CTYRAG	2 cut(s)	248, 593
SmoI	CTYRAG	2 cut(s)	248, 593
Sse9I	AATT	5 cut(s)	148, 474, 556, 588, 772
SspMI	CTAG	1 cut(s)	377
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	2 cut(s)	165, 776
TasI	AATT	5 cut(s)	148, 474, 556, 588, 772
TfiI	GAWTC	1 cut(s)	641
Tru1I	TTAA	3 cut(s)	210, 573, 594
Tru9I	TTAA	3 cut(s)	210, 573, 594
TscAI	CASTG	2 cut(s)	238, 690
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	2 cut(s)	328, 366
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	3 cut(s)	87, 188, 501
TspRI	CASTG	2 cut(s)	238, 690
Vha464I	CTTAAG	1 cut(s)	593
XapI	RAATTY	2 cut(s)	588, 772
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.