Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011896

Physical Location & Seq

Genomic Coordinates Forward (+)

89355576 .. 89358223

Gene Structure 2648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG670300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAATCAAGCAAAAAGCGAAAAGGGGCGAAGAGGCGTCGCCACACAGCTTCAAACGAAAACCCCAAACCCGAAAGAGTCAATGAAAACAAAGAAGAACAAAACCCAAAAGCTTCTAAGCGCAGAAAATCTCAGGGACCGGTCACCAACTCCTCCAGTTTTCTCGATAAGATGAAAGCTAAGCTGTCAGGAGGGCACTTCAGAATGCTTAATGAGAAGCTCTACACTTGCACTGGGGAAGAGGCGCTTGAGTATTTCAATGACGACCCAACATTGTTTGATACATACCATGCAGGATATCAAGAGCAAATGTCGCATTGGCCTGAGCTGCCGGTGAATATAATCATAAAATGGCTAAAAGATCACAGCCCGTCTCTAGTTGTGGCTGATTTTGGATGTGGAGATGCACGCCTTGCAAAAAGTGTGAAGAACAAAGTTTTCTCCTTTGATCTCATCTCAAATGATCCTTCAGTAATTTCTTGTGATATGGCAAATACTCCCCTTTGCTCTTCATCAGTAGATGTTGCTGTATTCTGCCTGTCATTGATGGGGACTAATTTCCCAAGTTACCTTAACGAAGCACACAGAATTCTTAAGCCACGTGGCTGGCTTTTGATAGCAGAAGTTAAGAGCAGATTTGATTCCAATACTGGAGGAGCAGACCCCAAGAAGTTCACAAAAGCAGTTTGTGATTTAGGATTTACCTCTGTGGCGAAGGTATTTTATGTTCCTCTCATTTCCTTGGATGGGTTGTTGGTCAAGTTTCTGTATGCTAAATTGCCGAGTTTGCTGACTCATGTGGATTATTGCAGGATTTCTCAAATAAGATGTTTATATTGTTTTACTTCAAGAAAAAGGTTAGCTTTTTGTAGATTAAATATTGTCTTGAATTCATTATTGCATATAAATGTTTCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000785 GO:0000792 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016740 GO:0016741 GO:0017053 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0033553 GO:0035064 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0090568 GO:0140030 GO:0140034 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_8

Protein Analysis

306

Amino Acids

34.5

Weight (kDa)

9.32

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_8	PF05148	56 - 237	1.2e-67	Hypothetical methyltransferase
Methyltransf_11	PF08241	130 - 206	9.7e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40530 AT5G40530 AT5G40530 AT5G40530
fragaria_vesca	FvH4_6g51630 FvH4_6g51630 FvH4_6g51630
malus_domestica	MD17G1023500.v1.1
prunus_persica	Prupe.3G293000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0173161
rosa_laevigata	RLG00000022167
rosa_multiflora	Rmu_sc0016793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079150
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646200 Rh2BG656900 Rh2CG622000 Rh2DG670300
rosa_wichuraiana	Rw2G053070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	458
AcsI	RAATTY	2 cut(s)	588, 889
AcuI	CTGAAG	2 cut(s)	184, 453
AcvI	CACGTG	1 cut(s)	602
AcyI	GRCGYC	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	747
AflII	CTTAAG	1 cut(s)	593
AgeI	ACCGGT	1 cut(s)	139
AgsI	TTSAA	4 cut(s)	54, 259, 849, 889
AluBI	AGCT	7 cut(s)	50, 113, 179, 184, 220, 328, 863
AluI	AGCT	7 cut(s)	50, 113, 179, 184, 220, 328, 863
Alw26I	GTCTC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	458
AoxI	GGCC	1 cut(s)	320
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	2 cut(s)	588, 889
AsiGI	ACCGGT	1 cut(s)	139
AspLEI	GCGC	2 cut(s)	123, 247
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	136, 346
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	198
BbrPI	CACGTG	1 cut(s)	602
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	2 cut(s)	541, 740
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	1 cut(s)	377
BfoI	RGCGCY	1 cut(s)	248
BfrI	CTTAAG	1 cut(s)	593
BisI	GCNGC	1 cut(s)	329
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	138
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	243
BpmI	CTGGAG	2 cut(s)	139, 672
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	602
BsaHI	GRCGYC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	741
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	747
Bse118I	RCCGGY	2 cut(s)	139, 331
Bse1I	ACTGG	3 cut(s)	156, 238, 655
BseDI	CCNNGG	1 cut(s)	741
BseGI	GGATG	2 cut(s)	401, 751
BseLI	CCNNNNNNNGG	1 cut(s)	747
BseMII	CTCAG	2 cut(s)	146, 315
BseNI	ACTGG	3 cut(s)	156, 238, 655
BseRI	GAGGAG	2 cut(s)	142, 669
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	315
BshFI	GGCC	1 cut(s)	322
BshTI	ACCGGT	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	140, 332
BslFI	GGGAC	2 cut(s)	150, 565
BslI	CCNNNNNNNGG	1 cut(s)	747
BsmAI	GTCTC	1 cut(s)	378
BsmBI	CGTCTC	1 cut(s)	378
BsmFI	GGGAC	2 cut(s)	150, 565
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	3 cut(s)	361, 448, 463
Bsp1720I	GCTNAGC	1 cut(s)	180
BspANI	GGCC	1 cut(s)	322
BspCNI	CTCAG	2 cut(s)	145, 316
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	458
BspQI	GCTCTTC	1 cut(s)	514
BspTI	CTTAAG	1 cut(s)	593
BsrFI	RCCGGY	2 cut(s)	139, 331
BsrI	ACTGG	3 cut(s)	156, 238, 655
BssAI	RCCGGY	2 cut(s)	139, 331
BssECI	CCNNGG	1 cut(s)	741
BssMI	GATC	3 cut(s)	361, 448, 463
BssNI	GRCGYC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	741
Bst6I	CTCTTC	3 cut(s)	26, 234, 514
BstACI	GRCGYC	1 cut(s)	37
BstAFI	CTTAAG	1 cut(s)	593
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	602
BstC8I	GCNNGC	2 cut(s)	409, 608
BstDEI	CTNAG	4 cut(s)	117, 132, 180, 324
BstEII	GGTNACC	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	401, 751
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	2 cut(s)	123, 247
BstKTI	GATC	3 cut(s)	364, 451, 466
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	3 cut(s)	361, 448, 463
BstMWI	GCNNNNNNNGC	4 cut(s)	313, 328, 413, 787
BstPI	GGTNACC	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	315
BstXI	CCANNNNNNTGG	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	401, 751
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	409, 608
CfoI	GCGC	2 cut(s)	123, 247
Cfr10I	RCCGGY	2 cut(s)	139, 331
Cfr13I	GGNCC	1 cut(s)	137
CseI	GACGC	1 cut(s)	26
CspAI	ACCGGT	1 cut(s)	139
CviAII	CATG	2 cut(s)	290, 797
DdeI	CTNAG	4 cut(s)	117, 132, 180, 324
DpnI	GATC	3 cut(s)	363, 450, 465
DpnII	GATC	3 cut(s)	361, 448, 463
Eam1104I	CTCTTC	3 cut(s)	26, 234, 514
EarI	CTCTTC	3 cut(s)	26, 234, 514
Eco130I	CCWWGG	1 cut(s)	741
Eco32I	GATATC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	137
Eco57I	CTGAAG	2 cut(s)	184, 453
Eco72I	CACGTG	1 cut(s)	602
Eco91I	GGTNACC	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	142
EcoRI	GAATTC	2 cut(s)	588, 889
EcoRV	GATATC	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	2 cut(s)	293, 800
FalI	AAGNNNNNCTT	4 cut(s)	231, 263, 847, 879
FaqI	GGGAC	2 cut(s)	150, 565
FatI	CATG	2 cut(s)	289, 796
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	2 cut(s)	408, 758
Fsp4HI	GCNGC	1 cut(s)	329
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	2 cut(s)	122, 246
GluI	GCNGC	1 cut(s)	329
GsuI	CTGGAG	2 cut(s)	139, 672
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	322
HapII	CCGG	2 cut(s)	140, 332
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	2 cut(s)	123, 247
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	2 cut(s)	293, 800
Hin6I	GCGC	2 cut(s)	121, 245
HinP1I	GCGC	2 cut(s)	121, 245
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	4 cut(s)	5, 78, 641, 793
HpaII	CCGG	2 cut(s)	140, 332
HphI	GGTGA	2 cut(s)	136, 346
Hpy166II	GTNNAC	1 cut(s)	675
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	5 cut(s)	164, 189, 302, 849, 886
Hpy8I	GTNNAC	1 cut(s)	675
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	2 cut(s)	477, 709
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	6 cut(s)	231, 293, 407, 416, 810, 901
HpyF10VI	GCNNNNNNNGC	4 cut(s)	313, 328, 413, 787
HpyF3I	CTNAG	4 cut(s)	117, 132, 180, 324
HpySE526I	ACGT	1 cut(s)	601
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	2 cut(s)	293, 800
HspAI	GCGC	2 cut(s)	121, 245
Kzo9I	GATC	3 cut(s)	361, 448, 463
LguI	GCTCTTC	1 cut(s)	514
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	2 cut(s)	142, 566
MalI	GATC	3 cut(s)	363, 450, 465
MboI	GATC	3 cut(s)	361, 448, 463
MboII	GAAGA	5 cut(s)	43, 107, 251, 439, 501
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	5 cut(s)	474, 556, 588, 776, 889
MlyI	GAGTC	2 cut(s)	87, 787
MnlI	CCTC	7 cut(s)	27, 163, 185, 235, 647, 715, 741
MseI	TTAA	5 cut(s)	210, 573, 594, 627, 875
MslI	CAYNNNNRTG	1 cut(s)	906
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	2 cut(s)	140, 332
Mva1269I	GAATGC	1 cut(s)	210
MwoI	GCNNNNNNNGC	4 cut(s)	313, 328, 413, 787
NdeII	GATC	3 cut(s)	361, 448, 463
NlaIII	CATG	2 cut(s)	293, 800
NlaIV	GGNNCC	1 cut(s)	138
NmeAIII	GCCGAG	1 cut(s)	807
NmuCI	GTSAC	1 cut(s)	142
PciSI	GCTCTTC	1 cut(s)	514
PctI	GAATGC	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	5, 641
PinAI	ACCGGT	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	330
PleI	GAGTC	2 cut(s)	86, 787
PmaCI	CACGTG	1 cut(s)	602
PmlI	CACGTG	1 cut(s)	602
PpsI	GAGTC	2 cut(s)	86, 787
Ppu21I	YACGTR	1 cut(s)	602
PspCI	CACGTG	1 cut(s)	602
PspEI	GGTNACC	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	137
PsrI	GAACNNNNNNTAC	2 cut(s)	711, 743
RseI	CAYNNNNRTG	1 cut(s)	906
SapI	GCTCTTC	1 cut(s)	514
SaqAI	TTAA	5 cut(s)	210, 573, 594, 627, 875
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	3 cut(s)	361, 448, 463
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	2 cut(s)	87, 787
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	1 cut(s)	394
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	906
SmlI	CTYRAG	2 cut(s)	248, 593
SmoI	CTYRAG	2 cut(s)	248, 593
Sse9I	AATT	5 cut(s)	474, 556, 588, 776, 889
SspI	AATATT	1 cut(s)	880
SspMI	CTAG	1 cut(s)	377
StyI	CCWWGG	1 cut(s)	741
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	1 cut(s)	165
TasI	AATT	5 cut(s)	474, 556, 588, 776, 889
TfiI	GAWTC	2 cut(s)	5, 641
Tru1I	TTAA	5 cut(s)	210, 573, 594, 627, 875
Tru9I	TTAA	5 cut(s)	210, 573, 594, 627, 875
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	4 cut(s)	99, 188, 501, 882
TspRI	CASTG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	2 cut(s)	588, 889
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.