Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011896

Physical Location & Seq

Genomic Coordinates Forward (+)

86680783 .. 86683303

Gene Structure 2521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG646200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAATCAAGCAAAAAGCGAAAAGGGGCGAAGAGGCGTCACCACGCAGCTTCAAACGAAAACCCCAAACCCGAAAGAGTCAATGAAAACAAAGAAGAACAAAACCCAAAAGCTTCTAAGCGCAGAAAATCTCAGGGACCGGTCTCCAACTCCTCCAGTTTTCTCGACAAGATGAAAGCTAAGCTGTCAGGAGGGCACTTCAGAATGCTTAATGAGAAGCTCTACACTTGCACTGGGGAAGAGGCGCTTGAGTATTTCAATGACGACCCAACATTGTTTGATACATACCATGCAGGATATCAAGAGCAAATGTCGCATTGGCCTGAGCTGCCGGTGAATATAATCATAAAATGGATAAAAGATCACAGCCCGTCTCTAGTTGTGGCTGATTTTGGATGTGGGGATGCACGCCTTGCAAAAAGTGTGAAGAACAAAGTTTTCTCCTTTGATCTCATCTCAAATGATCCTTCAGTACTTTCTTGTGATATGGCAAATACTCCCCTTTGCTCTTCATCAGTAGATGTTGCTGTATTCTGCCTGTCATTGATGGGGACTAATTTCCCAAGTTACCTTAACGAAGCACACAGAATTCTTAAGCCACGTGGCTGGCTTTTGATAGCAGAAGTGAAGAGCAGATTTGATTCCAATACTGGAGGAGCAGACCCCAAGAAGTTCACAAAAGCAGTTTGTGATTTAGGATTTACCTCTGTGGCGAAGGATTTCTCAAATAAGATGTTTATATTGTTTTACTTCAAGAAAAAGGTTAGCTTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000785 GO:0000792 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016740 GO:0016741 GO:0017053 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0033553 GO:0035064 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0090568 GO:0140030 GO:0140034 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_8

Protein Analysis

258

Amino Acids

29.06

Weight (kDa)

9.25

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_8	PF05148	56 - 254	1.4e-73	Hypothetical methyltransferase
Methyltransf_11	PF08241	130 - 206	8.7e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0011896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40530 AT5G40530 AT5G40530 AT5G40530
fragaria_vesca	FvH4_6g51630 FvH4_6g51630 FvH4_6g51630
malus_domestica	MD17G1023500.v1.1
prunus_persica	Prupe.3G293000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0173161
rosa_laevigata	RLG00000022167
rosa_multiflora	Rmu_sc0016793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079150
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646200 Rh2BG656900 Rh2CG622000 Rh2DG670300
rosa_wichuraiana	Rw2G053070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	458
AcsI	RAATTY	1 cut(s)	588
AcuI	CTGAAG	2 cut(s)	184, 453
AcvI	CACGTG	1 cut(s)	602
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	1 cut(s)	474
AflII	CTTAAG	1 cut(s)	593
AgeI	ACCGGT	1 cut(s)	139
AgsI	TTSAA	3 cut(s)	54, 259, 754
AluBI	AGCT	7 cut(s)	50, 113, 179, 184, 220, 328, 768
AluI	AGCT	7 cut(s)	50, 113, 179, 184, 220, 328, 768
Alw26I	GTCTC	2 cut(s)	148, 378
AlwI	GGATC	1 cut(s)	458
AoxI	GGCC	1 cut(s)	320
ApeKI	GCWGC	2 cut(s)	47, 328
ApoI	RAATTY	1 cut(s)	588
AsiGI	ACCGGT	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	719
AspLEI	GCGC	2 cut(s)	123, 247
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	32, 346
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	198
BbrPI	CACGTG	1 cut(s)	602
BbvI	GCAGC	2 cut(s)	59, 315
BccI	CCATC	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	148, 378
BfaI	CTAG	1 cut(s)	377
BfoI	RGCGCY	1 cut(s)	248
BfrI	CTTAAG	1 cut(s)	593
BisI	GCNGC	2 cut(s)	48, 329
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	2 cut(s)	49, 330
BmcAI	AGTACT	1 cut(s)	474
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	138
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	243
BpmI	CTGGAG	2 cut(s)	139, 672
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	602
BsaHI	GRCGYC	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	139
Bse118I	RCCGGY	2 cut(s)	139, 331
Bse1I	ACTGG	3 cut(s)	156, 238, 655
BseGI	GGATG	2 cut(s)	401, 409
BseMII	CTCAG	2 cut(s)	146, 315
BseNI	ACTGG	3 cut(s)	156, 238, 655
BseRI	GAGGAG	2 cut(s)	142, 669
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	2 cut(s)	59, 315
BshFI	GGCC	1 cut(s)	322
BshTI	ACCGGT	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	140, 332
BslFI	GGGAC	2 cut(s)	150, 565
BsmAI	GTCTC	2 cut(s)	148, 378
BsmBI	CGTCTC	1 cut(s)	378
BsmFI	GGGAC	2 cut(s)	150, 565
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	322
Bso31I	GGTCTC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	3 cut(s)	361, 448, 463
Bsp1720I	GCTNAGC	1 cut(s)	180
BspANI	GGCC	1 cut(s)	322
BspCNI	CTCAG	2 cut(s)	145, 316
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	458
BspQI	GCTCTTC	2 cut(s)	514, 623
BspTI	CTTAAG	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	148
BsrFI	RCCGGY	2 cut(s)	139, 331
BsrI	ACTGG	3 cut(s)	156, 238, 655
BssAI	RCCGGY	2 cut(s)	139, 331
BssMI	GATC	3 cut(s)	361, 448, 463
BssNI	GRCGYC	1 cut(s)	37
Bst6I	CTCTTC	4 cut(s)	26, 234, 514, 623
BstACI	GRCGYC	1 cut(s)	37
BstAFI	CTTAAG	1 cut(s)	593
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	602
BstC8I	GCNNGC	2 cut(s)	409, 608
BstDEI	CTNAG	4 cut(s)	117, 132, 180, 324
BstF5I	GGATG	2 cut(s)	401, 409
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	2 cut(s)	123, 247
BstKTI	GATC	3 cut(s)	364, 451, 466
BstMAI	GTCTC	2 cut(s)	148, 378
BstMBI	GATC	3 cut(s)	361, 448, 463
BstMWI	GCNNNNNNNGC	3 cut(s)	313, 328, 413
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	59, 315
BstXI	CCANNNNNNTGG	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	401, 409
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	409, 608
CfoI	GCGC	2 cut(s)	123, 247
Cfr10I	RCCGGY	2 cut(s)	139, 331
Cfr13I	GGNCC	1 cut(s)	137
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	473
CspAI	ACCGGT	1 cut(s)	139
CviAII	CATG	1 cut(s)	290
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	4 cut(s)	117, 132, 180, 324
DpnI	GATC	3 cut(s)	363, 450, 465
DpnII	GATC	3 cut(s)	361, 448, 463
Eam1104I	CTCTTC	4 cut(s)	26, 234, 514, 623
EarI	CTCTTC	4 cut(s)	26, 234, 514, 623
Eco31I	GGTCTC	1 cut(s)	148
Eco32I	GATATC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	137
Eco57I	CTGAAG	2 cut(s)	184, 453
Eco72I	CACGTG	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	588
EcoRV	GATATC	1 cut(s)	299
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	1 cut(s)	293
FaiI	YATR	6 cut(s)	286, 291, 341, 347, 488, 740
FalI	AAGNNNNNCTT	3 cut(s)	231, 263, 752
FaqI	GGGAC	2 cut(s)	150, 565
FatI	CATG	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	48, 329
FokI	GGATG	2 cut(s)	408, 416
Fsp4HI	GCNGC	2 cut(s)	48, 329
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	2 cut(s)	122, 246
GluI	GCNGC	2 cut(s)	48, 329
GsuI	CTGGAG	2 cut(s)	139, 672
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	322
HapII	CCGG	2 cut(s)	140, 332
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	2 cut(s)	123, 247
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	293
Hin6I	GCGC	2 cut(s)	121, 245
HinP1I	GCGC	2 cut(s)	121, 245
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	3 cut(s)	5, 78, 641
HpaII	CCGG	2 cut(s)	140, 332
HphI	GGTGA	2 cut(s)	32, 346
Hpy166II	GTNNAC	1 cut(s)	675
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	4 cut(s)	164, 189, 302, 754
Hpy8I	GTNNAC	1 cut(s)	675
HpyAV	CCTTC	2 cut(s)	477, 709
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	4 cut(s)	231, 293, 407, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	313, 328, 413
HpyF3I	CTNAG	4 cut(s)	117, 132, 180, 324
HpySE526I	ACGT	1 cut(s)	601
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	293
HspAI	GCGC	2 cut(s)	121, 245
Kzo9I	GATC	3 cut(s)	361, 448, 463
LguI	GCTCTTC	2 cut(s)	514, 623
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	2 cut(s)	59, 315
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	2 cut(s)	38, 566
MalI	GATC	3 cut(s)	363, 450, 465
MboI	GATC	3 cut(s)	361, 448, 463
MboII	GAAGA	6 cut(s)	43, 107, 251, 439, 501, 640
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	2 cut(s)	556, 588
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	6 cut(s)	27, 163, 185, 235, 647, 715
MroXI	GAANNNNTTC	1 cut(s)	719
MseI	TTAA	3 cut(s)	210, 573, 594
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	2 cut(s)	140, 332
Mva1269I	GAATGC	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	313, 328, 413
NdeII	GATC	3 cut(s)	361, 448, 463
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	38
PciSI	GCTCTTC	2 cut(s)	514, 623
PctI	GAATGC	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	2 cut(s)	5, 641
PinAI	ACCGGT	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	49, 330
PleI	GAGTC	1 cut(s)	86
PmaCI	CACGTG	1 cut(s)	602
PmlI	CACGTG	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	602
PspCI	CACGTG	1 cut(s)	602
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
SapI	GCTCTTC	2 cut(s)	514, 623
SaqAI	TTAA	3 cut(s)	210, 573, 594
SatI	GCNGC	2 cut(s)	48, 329
Sau3AI	GATC	3 cut(s)	361, 448, 463
Sau96I	GGNCC	1 cut(s)	137
ScaI	AGTACT	1 cut(s)	474
SchI	GAGTC	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	1 cut(s)	394
SinI	GGWCC	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	248, 593
SmoI	CTYRAG	2 cut(s)	248, 593
Sse9I	AATT	2 cut(s)	556, 588
SspMI	CTAG	1 cut(s)	377
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	1 cut(s)	165
TasI	AATT	2 cut(s)	556, 588
TatI	WGTACW	1 cut(s)	472
TfiI	GAWTC	2 cut(s)	5, 641
Tru1I	TTAA	3 cut(s)	210, 573, 594
Tru9I	TTAA	3 cut(s)	210, 573, 594
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	2 cut(s)	47, 328
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	3 cut(s)	99, 188, 501
TspRI	CASTG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	588
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	1 cut(s)	377
ZrmI	AGTACT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.