Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0011896

Physical Location & Seq

Genomic Coordinates Reverse (-)

1707003 .. 1709598

Gene Structure 2596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1023500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCCGATAACGAATCGAGCAAAAAGCGGAAGAGAGCGGGGCGTCGCAATAAATCTCACGCCCAAAAGCTCAAGCTTTCCACCGAAAGAGAAAGCACTTCCCCAAAAGCTGAAAGAATCAATGAAGAAGCAGCAGAGAATCCAAAAGCTTCTGTTTCTGCTTCTGCTAAGCCCTTAAAATCGCAGGGAAAGCTCTCGAATTCGTCAAGCTTTCTCGATAAGATGAAAGCAAAGCTATCCGGAGGCCATTTTCGGATGATTAACGAGAAGCTCTACACTTGCACTGGAAAAGAGGCTCTTGAGTATTTCAATGACGACCCGACATTGTTTGATACATACCACACAGGATATCAAGAGCAAATGTCACATTGGCCTGAGCTGCCAGTTGATATAATCATCAAATGGCTTAAAGAGCATAGCCCTTCTCTGGTCGTGGCTGATTTTGGATGCGGGGATGCACGTCTAGCAAAAAATGTGAAGAATAAAGTCTTCTCCTTTGATCTCATATCCAACGATCCTTCAGTAATATCCTGTGATATGGCAAATACACCCCTCGGCTCTACATCTGTAGATGTTGCTGTGTTCTGCCTTTCGTTGATGGGGACAAATTTCCCAAATTACCTGAATGAAGCACACAGAATACTTAAGCCACGTGGTTGGCTTTTGATAGCAGAAGTGAAGAGCAGATTTGACTCGACTACTGGAGGAGCCGACCCAAAGACATTTACAAAAGCCGTATGCGATCTTGGATTTACCTCAGTGTCAAAGGATTTCTCAAACAAGATGTTTATATTGTTTTACTTCAAGAAAAAGGAGGAGCAAGATTCAAAGAAAAAGGACATTGAATGGCCTGAGCTGAAACCTTGTTTGTATAAGCGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000785 GO:0000792 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016740 GO:0016741 GO:0017053 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0033553 GO:0035064 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0090568 GO:0140030 GO:0140034 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_8

Protein Analysis

295

Amino Acids

33.17

Weight (kDa)

9.24

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_8	PF05148	73 - 294	9.4e-81	Hypothetical methyltransferase
Methyltransf_11	PF08241	148 - 223	4.8e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40530 AT5G40530 AT5G40530 AT5G40530
fragaria_vesca	FvH4_6g51630 FvH4_6g51630 FvH4_6g51630
malus_domestica	MD17G1023500.v1.1
prunus_persica	Prupe.3G293000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0173161
rosa_laevigata	RLG00000022167
rosa_multiflora	Rmu_sc0016793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079150
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646200 Rh2BG656900 Rh2CG622000 Rh2DG670300
rosa_wichuraiana	Rw2G053070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	239
AciI	CCGC	4 cut(s)	28, 38, 450, 880
AclWI	GGATC	1 cut(s)	509
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	199, 607
AcuI	CTGAAG	1 cut(s)	504
AcvI	CACGTG	1 cut(s)	653
AcyI	GRCGYC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	427
AflII	CTTAAG	1 cut(s)	644
AgsI	TTSAA	4 cut(s)	310, 805, 828, 845
AjiI	CACGTC	1 cut(s)	461
AlwI	GGATC	1 cut(s)	509
Aor13HI	TCCGGA	1 cut(s)	239
AoxI	GGCC	4 cut(s)	3, 244, 371, 848
ApeKI	GCWGC	2 cut(s)	131, 379
ApoI	RAATTY	2 cut(s)	199, 607
AspLEI	GCGC	1 cut(s)	879
BbrPI	CACGTG	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	481
BbvI	GCAGC	2 cut(s)	143, 366
BccI	CCATC	1 cut(s)	592
BceAI	ACGGC	1 cut(s)	719
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	567
BfoI	RGCGCY	1 cut(s)	880
BfrI	CTTAAG	1 cut(s)	644
BisI	GCNGC	3 cut(s)	132, 380, 880
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	3 cut(s)	133, 381, 881
BmgBI	CACGTC	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	709
BmsI	GCATC	2 cut(s)	437, 445
BpiI	GAAGAC	1 cut(s)	481
BpmI	CTGGAG	1 cut(s)	723
Bpu10I	CCTNAGC	2 cut(s)	375, 852
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	2 cut(s)	56, 320
BsaAI	YACGTR	1 cut(s)	653
BsaHI	GRCGYC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	553
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	3 cut(s)	289, 383, 706
BseAI	TCCGGA	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	553
BseGI	GGATG	3 cut(s)	261, 452, 460
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	3 cut(s)	366, 771, 843
BseNI	ACTGG	3 cut(s)	289, 383, 706
BseRI	GAGGAG	2 cut(s)	720, 830
BseXI	GCAGC	2 cut(s)	143, 366
BshFI	GGCC	4 cut(s)	5, 246, 373, 850
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	616
BsnI	GGCC	4 cut(s)	5, 246, 373, 850
Bsp13I	TCCGGA	1 cut(s)	239
Bsp143I	GATC	3 cut(s)	499, 514, 742
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	4 cut(s)	28, 38, 450, 880
BspANI	GGCC	4 cut(s)	5, 246, 373, 850
BspCNI	CTCAG	3 cut(s)	367, 770, 844
BspEI	TCCGGA	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	709
BspPI	GGATC	1 cut(s)	509
BspQI	GCTCTTC	1 cut(s)	674
BspTI	CTTAAG	1 cut(s)	644
BsrBI	CCGCTC	1 cut(s)	38
BsrI	ACTGG	3 cut(s)	289, 383, 706
BssECI	CCNNGG	1 cut(s)	553
BssMI	GATC	3 cut(s)	499, 514, 742
BssNI	GRCGYC	1 cut(s)	43
Bst6I	CTCTTC	2 cut(s)	26, 674
BstACI	GRCGYC	1 cut(s)	43
BstAFI	CTTAAG	1 cut(s)	644
BstBAI	YACGTR	1 cut(s)	653
BstDEI	CTNAG	4 cut(s)	168, 375, 757, 852
BstF5I	GGATG	3 cut(s)	261, 452, 460
BstH2I	RGCGCY	1 cut(s)	880
BstHHI	GCGC	1 cut(s)	879
BstKTI	GATC	3 cut(s)	502, 517, 745
BstMBI	GATC	3 cut(s)	499, 514, 742
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 379, 412, 464
BstSFI	CTRYAG	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	143, 366
BstV2I	GAAGAC	1 cut(s)	481
BstXI	CCANNNNNNTGG	1 cut(s)	657
BsuRI	GGCC	4 cut(s)	5, 246, 373, 850
BtrI	CACGTC	1 cut(s)	461
BtsCI	GGATG	3 cut(s)	261, 452, 460
BtsIMutI	CAGTG	2 cut(s)	282, 765
CfoI	GCGC	1 cut(s)	879
CseI	GACGC	1 cut(s)	32
DdeI	CTNAG	4 cut(s)	168, 375, 757, 852
DpnI	GATC	3 cut(s)	501, 516, 744
DpnII	GATC	3 cut(s)	499, 514, 742
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	26, 674
EarI	CTCTTC	2 cut(s)	26, 674
Eco32I	GATATC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	504
Eco72I	CACGTG	1 cut(s)	653
EcoRI	GAATTC	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	350
FaiI	YATR	8 cut(s)	337, 392, 417, 506, 539, 739, 791, 873
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	616
FauI	CCCGC	2 cut(s)	31, 443
Fnu4HI	GCNGC	3 cut(s)	132, 380, 880
FokI	GGATG	3 cut(s)	268, 459, 467
Fsp4HI	GCNGC	3 cut(s)	132, 380, 880
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	1 cut(s)	878
GluI	GCNGC	3 cut(s)	132, 380, 880
GsuI	CTGGAG	1 cut(s)	723
HaeII	RGCGCY	1 cut(s)	880
HaeIII	GGCC	4 cut(s)	5, 246, 373, 850
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	879
Hin1I	GRCGYC	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	877
HinP1I	GCGC	1 cut(s)	877
HindIII	AAGCTT	3 cut(s)	74, 147, 208
HinfI	GANTC	5 cut(s)	14, 117, 139, 692, 824
HpaII	CCGG	1 cut(s)	240
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	6 cut(s)	196, 215, 240, 299, 353, 805
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	432, 528
HpyCH4IV	ACGT	2 cut(s)	460, 652
HpyCH4V	TGCA	2 cut(s)	282, 458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 379, 412, 464
HpyF3I	CTNAG	4 cut(s)	168, 375, 757, 852
HpySE526I	ACGT	2 cut(s)	460, 652
Hsp92I	GRCGYC	1 cut(s)	43
HspAI	GCGC	1 cut(s)	877
Kpn2I	TCCGGA	1 cut(s)	239
Kzo9I	GATC	3 cut(s)	499, 514, 742
LguI	GCTCTTC	1 cut(s)	674
LmnI	GCTCC	2 cut(s)	707, 817
Lsp1109I	GCAGC	2 cut(s)	143, 366
LweI	GCATC	2 cut(s)	437, 445
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	2 cut(s)	460, 652
MaeIII	GTNAC	1 cut(s)	363
MalI	GATC	3 cut(s)	501, 516, 744
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	3 cut(s)	499, 514, 742
MboII	GAAGA	5 cut(s)	43, 137, 481, 490, 691
MluCI	AATT	3 cut(s)	199, 607, 616
MlyI	GAGTC	1 cut(s)	686
MmeI	TCCRAC	1 cut(s)	534
MnlI	CCTC	6 cut(s)	236, 286, 563, 698, 766, 808
MroI	TCCGGA	1 cut(s)	239
MseI	TTAA	4 cut(s)	176, 261, 408, 645
MspA1I	CMGCKG	1 cut(s)	882
MspCI	CTTAAG	1 cut(s)	644
MspI	CCGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	4 cut(s)	190, 379, 412, 464
NdeII	GATC	3 cut(s)	499, 514, 742
NlaIV	GGNNCC	1 cut(s)	709
NmeAIII	GCCGAG	1 cut(s)	534
NmuCI	GTSAC	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	674
PfeI	GAWTC	4 cut(s)	14, 117, 139, 824
PkrI	GCNGC	3 cut(s)	133, 381, 881
PleI	GAGTC	1 cut(s)	686
PmaCI	CACGTG	1 cut(s)	653
PmlI	CACGTG	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	686
Ppu21I	YACGTR	1 cut(s)	653
PspCI	CACGTG	1 cut(s)	653
PspN4I	GGNNCC	1 cut(s)	709
SapI	GCTCTTC	1 cut(s)	674
SaqAI	TTAA	4 cut(s)	176, 261, 408, 645
SatI	GCNGC	3 cut(s)	132, 380, 880
Sau3AI	GATC	3 cut(s)	499, 514, 742
SchI	GAGTC	1 cut(s)	686
SfaNI	GCATC	2 cut(s)	437, 445
SfcI	CTRYAG	1 cut(s)	567
SmlI	CTYRAG	3 cut(s)	71, 299, 644
SmoI	CTYRAG	3 cut(s)	71, 299, 644
Sse9I	AATT	3 cut(s)	199, 607, 616
SsiI	CCGC	4 cut(s)	28, 38, 450, 880
SspMI	CTAG	1 cut(s)	464
TaiI	ACGT	2 cut(s)	463, 655
TaqI	TCGA	4 cut(s)	17, 197, 216, 695
TasI	AATT	3 cut(s)	199, 607, 616
TauI	GCSGC	1 cut(s)	882
TfiI	GAWTC	4 cut(s)	14, 117, 139, 824
Tru1I	TTAA	4 cut(s)	176, 261, 408, 645
Tru9I	TTAA	4 cut(s)	176, 261, 408, 645
TscAI	CASTG	2 cut(s)	289, 765
TseFI	GTSAC	1 cut(s)	363
TseI	GCWGC	2 cut(s)	131, 379
Tsp45I	GTSAC	1 cut(s)	363
TspDTI	ATGAA	3 cut(s)	138, 239, 642
TspRI	CASTG	2 cut(s)	289, 765
Vha464I	CTTAAG	1 cut(s)	644
XapI	RAATTY	2 cut(s)	199, 607
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.