Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008082

Physical Location & Seq

Genomic Coordinates Forward (+)

69087039 .. 69097811

Gene Structure 10773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0565900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGGGTTTCTGTTGTCCAAGCTAACCAGTTTGGCCACTGTTGTTCTATTTGGGCTTGGTTTCTGCAGCTTCTTCACCTCAACAGATGCATATGATCCGCTTGATCCTAATGGCAACATCACAATTAAGTGGGATATTATAAGCTGGACCCCTGATGGCTATGTTGCCGTTGCTACGCTTTTTAACTTCCAGCAGTATAGACACATTCAAGCACCAGGCTGGACGCTTGGATGGACATGGGCAAAGAAGGAGGTAATTTGGAACATGGTGGGAGGACAAGCCACCGATCAAGGTGATTGTTCAAAATTTAAGACAACTCCCCCACATTGCTGCAAAAAGACCCCAACCATTGTTGATCTACTCCCTGGAACTCCGTACAATCAGCAGTATTCCAATTGTTGTAGAGGGGGAGTGCTGAGCTCATGGATACAGGATCCATCCAATGCTGTAGCTTCTTTTCAAATAAGTGTTGGTCGATCTGGAACGACCAACAAGACAGTTAGGCTTCCGAAAAACTATACCCTAATGGGACCTGGGCCTGGGTACACTTGTGGTGTTGCAAAAGTTGTTAAACCAACTAAATTCTTTACAGCTGATAAAAGAAGAGTCTCTCAAGCCCTGATGACATGGAATGTGACATGCACATATTCACAGTTCCTGGCTCAGAAAGCTCCTCCTTGCTGTGTCTCGTTGTCTTCCTTCTACAATGACACAGTAGTTCCCTGCCCGACATGTTCGTGTGGCTGCCAAAACAACATAACTCATCCTGGAAGCTGTGTAGTGCCAGAGTCTCCGTATTTGGCTTCAGTTGTTTCAGCTGCTGATAAGAATTCACCTTTGGTTAGATGTACTAGCCATATGTGCCCTATCAGAGTTCATTGGCACGTCAAGCTGAATTACAAGGAATACTGGCGAGTGAAGGTCACAATTACAAACTTTGATTACAGGAGGAATTATTCTGATTGGAACTTGGTTGCCCAACACCCAAATTTTGACAATCTTACCCAAATTTTCAGCTTCAACGCAAAGTCCTTGACTCCTTATGGAACCATAAATGATACTGTAATGCTATGGGGAACCAAGTTCTACAACGACATGCTGGTGCAATCTGGGCCTCTCGGTAATGTGCAGTCAGAGATGCTTTTCCGGAAGAATCCAGCCACCTTCACTTTTGACAAGGGATGGGCGTTCCCAAGAAGGATCTATTTCAATGGTGATACTTGTGTAATGCCACCCCCAGATGCCTTTCCACATTTGCCAAATGCTGGTTTCCGACACTTCAACTATGGGCTATTTGCACTTGATAGATGTACAGGGCTTACGGAGAATCAGCTTATTGTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

448

Amino Acids

50.16

Weight (kDa)

8.93

Isoelectric Point (pI)

30.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	54 - 217	7.8e-67	COBRA-like protein
COB_C	PF25079	227 - 417	2.8e-58	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01580
fragaria_vesca	FvH4_6g51580 FvH4_6g51620
malus_domestica	MD07G1177500.v1.1 MD17G1023700.v1.1 MD17G1024400.v1.1 MD17G1024800.v1.1 MD17G1025100.v1.1 MD17G1025800.v1.1 MD17G1026000.v1.1
prunus_persica	Prupe.3G292700_v2.0.a1
pyrus_communis	pycom07g17150 pycom17g02080 pycom17g02110
rosa_laevigata	RLG00000022166
rosa_multiflora	Rmu_sc0000860.1_g000001 Rmu_sc0016793.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079160
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646100 Rh2BG656800 Rh2CG621900 Rh2DG670200
rosa_wichuraiana	Rw2G053060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	1265
AccIII	TCCGGA	1 cut(s)	1146
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	5 cut(s)	89, 98, 428, 441, 1208
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	5 cut(s)	305, 581, 829, 988, 1008
AcuI	CTGAAG	1 cut(s)	789
AfaI	GTAC	4 cut(s)	377, 545, 850, 1312
AfiI	CCNNNNNNNGG	2 cut(s)	539, 1265
AflIII	ACRYGT	1 cut(s)	731
AgsI	TTSAA	6 cut(s)	209, 303, 461, 1021, 1210, 1282
AjiI	CACGTC	1 cut(s)	886
AjnI	CCWGG	6 cut(s)	214, 364, 532, 538, 657, 766
AjuI	GAANNNNNNNTTGG	2 cut(s)	821, 853
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	3 cut(s)	613, 691, 795
AlwI	GGATC	5 cut(s)	89, 98, 428, 441, 1208
AlwNI	CAGNNNCTG	2 cut(s)	658, 821
Aor13HI	TCCGGA	1 cut(s)	1146
AoxI	GGCC	3 cut(s)	33, 536, 1112
ApeKI	GCWGC	4 cut(s)	66, 330, 744, 818
ApoI	RAATTY	5 cut(s)	305, 581, 829, 988, 1008
AspS9I	GGNCC	4 cut(s)	147, 530, 536, 1112
AsuHPI	GGTGA	4 cut(s)	67, 305, 825, 1226
AvaII	GGWCC	2 cut(s)	147, 530
BaeGI	GKGCMC	1 cut(s)	866
BaeI	ACNNNNGTAYC	4 cut(s)	535, 568, 1209, 1242
BalI	TGGCCA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	4 cut(s)	78, 317, 731, 805
BccI	CCATC	4 cut(s)	149, 225, 445, 1176
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	6 cut(s)	216, 366, 534, 540, 659, 768
BciVI	GTATCC	1 cut(s)	420
BcoDI	GTCTC	3 cut(s)	613, 691, 795
BfaI	CTAG	1 cut(s)	852
BfmI	CTRYAG	2 cut(s)	64, 447
BfuI	GTATCC	1 cut(s)	420
BisI	GCNGC	4 cut(s)	67, 331, 745, 819
BlpI	GCTNAGC	1 cut(s)	416
BlsI	GCNGC	4 cut(s)	68, 332, 746, 820
Bme1390I	CCNGG	6 cut(s)	216, 366, 534, 540, 659, 768
Bme18I	GGWCC	2 cut(s)	147, 530
BmgBI	CACGTC	1 cut(s)	886
BmgT120I	GGNCC	4 cut(s)	147, 530, 536, 1112
BmiI	GGNNCC	5 cut(s)	149, 435, 531, 1048, 1078
BmrFI	CCNGG	6 cut(s)	216, 366, 534, 540, 659, 768
BmsI	GCATC	3 cut(s)	76, 1128, 1231
BpiI	GAAGAC	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	597
BsaJI	CCNNGG	3 cut(s)	364, 533, 539
BsaWI	WCCGGW	1 cut(s)	1146
Bsc4I	CCNNNNNNNGG	2 cut(s)	539, 1265
Bse1I	ACTGG	2 cut(s)	27, 914
Bse3DI	GCAATG	1 cut(s)	325
BseAI	TCCGGA	1 cut(s)	1146
BseBI	CCWGG	6 cut(s)	216, 366, 534, 540, 659, 768
BseDI	CCNNGG	3 cut(s)	364, 533, 539
BseGI	GGATG	4 cut(s)	236, 437, 763, 1187
BseLI	CCNNNNNNNGG	2 cut(s)	539, 1265
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	407, 677
BseNI	ACTGG	2 cut(s)	27, 914
BseRI	GAGGAG	1 cut(s)	663
BseSI	GKGCMC	1 cut(s)	866
BseXI	GCAGC	4 cut(s)	78, 317, 731, 805
BsgI	GTGCAG	1 cut(s)	1148
BshFI	GGCC	3 cut(s)	35, 538, 1114
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	1147
BslFI	GGGAC	1 cut(s)	543
BslI	CCNNNNNNNGG	2 cut(s)	539, 1265
BsmAI	GTCTC	3 cut(s)	613, 691, 795
BsmFI	GGGAC	1 cut(s)	543
BsnI	GGCC	3 cut(s)	35, 538, 1114
Bsp1286I	GDGCHC	2 cut(s)	422, 866
Bsp13I	TCCGGA	1 cut(s)	1146
Bsp1407I	TGTACA	1 cut(s)	1310
Bsp143I	GATC	7 cut(s)	94, 103, 286, 355, 433, 476, 1200
Bsp1720I	GCTNAGC	1 cut(s)	416
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	3 cut(s)	35, 538, 1114
BspCNI	CTCAG	2 cut(s)	408, 676
BspEI	TCCGGA	1 cut(s)	1146
BspLI	GGNNCC	5 cut(s)	149, 435, 531, 1048, 1078
BspMAI	CTGCAG	1 cut(s)	68
BspPI	GGATC	5 cut(s)	89, 98, 428, 441, 1208
BsrDI	GCAATG	1 cut(s)	325
BsrGI	TGTACA	1 cut(s)	1310
BsrI	ACTGG	2 cut(s)	27, 914
BssECI	CCNNGG	3 cut(s)	364, 533, 539
BssMI	GATC	7 cut(s)	94, 103, 286, 355, 433, 476, 1200
Bst2UI	CCWGG	6 cut(s)	216, 366, 534, 540, 659, 768
Bst4CI	ACNGT	5 cut(s)	40, 499, 654, 715, 1063
Bst6I	CTCTTC	1 cut(s)	598
BstAUI	TGTACA	1 cut(s)	1310
BstDEI	CTNAG	2 cut(s)	416, 663
BstF5I	GGATG	4 cut(s)	236, 437, 763, 1187
BstKTI	GATC	7 cut(s)	97, 106, 289, 358, 436, 479, 1203
BstMAI	GTCTC	3 cut(s)	613, 691, 795
BstMBI	GATC	7 cut(s)	94, 103, 286, 355, 433, 476, 1200
BstMWI	GCNNNNNNNGC	4 cut(s)	668, 861, 889, 1111
BstNI	CCWGG	6 cut(s)	216, 366, 534, 540, 659, 768
BstNSI	RCATGY	3 cut(s)	642, 735, 1099
BstSCI	CCNGG	6 cut(s)	214, 364, 532, 538, 657, 766
BstSFI	CTRYAG	2 cut(s)	64, 447
BstSLI	GKGCMC	1 cut(s)	866
BstV1I	GCAGC	4 cut(s)	78, 317, 731, 805
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	2 cut(s)	433, 1200
BstYI	RGATCY	2 cut(s)	433, 1200
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	35, 538, 1114
BtrI	CACGTC	1 cut(s)	886
BtsCI	GGATG	4 cut(s)	236, 437, 763, 1187
BtsIMutI	CAGTG	1 cut(s)	36
CaiI	CAGNNNCTG	2 cut(s)	658, 821
Cfr13I	GGNCC	4 cut(s)	147, 530, 536, 1112
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	4 cut(s)	376, 544, 849, 1311
CviAII	CATG	8 cut(s)	237, 265, 423, 627, 639, 732, 1096, 1342
CviQI	GTAC	4 cut(s)	376, 544, 849, 1311
DdeI	CTNAG	2 cut(s)	416, 663
DpnI	GATC	7 cut(s)	96, 105, 288, 357, 435, 478, 1202
DpnII	GATC	7 cut(s)	94, 103, 286, 355, 433, 476, 1200
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	598
Ecl136II	GAGCTC	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	422
Eco47I	GGWCC	2 cut(s)	147, 530
Eco53kI	GAGCTC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	789
EcoICRI	GAGCTC	1 cut(s)	420
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	829
EcoRII	CCWGG	6 cut(s)	214, 364, 532, 538, 657, 766
EcoT22I	ATGCAT	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	422
FaeI	CATG	8 cut(s)	240, 268, 426, 630, 642, 735, 1099, 1345
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	8 cut(s)	236, 264, 422, 626, 638, 731, 1095, 1341
FauNDI	CATATG	2 cut(s)	91, 858
Fnu4HI	GCNGC	4 cut(s)	67, 331, 745, 819
FokI	GGATG	4 cut(s)	243, 424, 750, 1194
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	4 cut(s)	67, 331, 745, 819
FspBI	CTAG	1 cut(s)	852
GluI	GCNGC	4 cut(s)	67, 331, 745, 819
HaeIII	GGCC	3 cut(s)	35, 538, 1114
HapII	CCGG	1 cut(s)	1147
HgaI	GACGC	1 cut(s)	232
Hin1II	CATG	8 cut(s)	240, 268, 426, 630, 642, 735, 1099, 1345
HinfI	GANTC	5 cut(s)	606, 788, 1036, 1153, 1327
HpaII	CCGG	1 cut(s)	1147
HphI	GGTGA	4 cut(s)	67, 305, 825, 1226
Hpy166II	GTNNAC	1 cut(s)	546
Hpy188I	TCNGA	6 cut(s)	510, 666, 872, 961, 1135, 1274
Hpy188III	TCNNGA	2 cut(s)	480, 1147
Hpy8I	GTNNAC	1 cut(s)	546
HpyAV	CCTTC	5 cut(s)	241, 709, 913, 1174, 1191
HpyCH4III	ACNGT	5 cut(s)	40, 499, 654, 715, 1063
HpyCH4IV	ACGT	1 cut(s)	885
HpyCH4V	TGCA	8 cut(s)	66, 89, 333, 560, 642, 1105, 1129, 1298
HpyF10VI	GCNNNNNNNGC	4 cut(s)	668, 861, 889, 1111
HpyF3I	CTNAG	2 cut(s)	416, 663
HpySE526I	ACGT	1 cut(s)	885
Hsp92II	CATG	8 cut(s)	240, 268, 426, 630, 642, 735, 1099, 1345
Kpn2I	TCCGGA	1 cut(s)	1146
Kzo9I	GATC	7 cut(s)	94, 103, 286, 355, 433, 476, 1200
LmnI	GCTCC	1 cut(s)	676
Lsp1109I	GCAGC	4 cut(s)	78, 317, 731, 805
LweI	GCATC	3 cut(s)	76, 1128, 1231
MaeI	CTAG	1 cut(s)	852
MaeII	ACGT	1 cut(s)	885
MaeIII	GTNAC	2 cut(s)	634, 922
MalI	GATC	7 cut(s)	96, 105, 288, 357, 435, 478, 1202
MboI	GATC	7 cut(s)	94, 103, 286, 355, 433, 476, 1200
MboII	GAAGA	4 cut(s)	64, 615, 687, 1162
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	2 cut(s)	433, 1200
MhlI	GDGCHC	2 cut(s)	422, 866
MlsI	TGGCCA	1 cut(s)	35
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	3 cut(s)	615, 797, 1030
MmeI	TCCRAC	1 cut(s)	1297
MnlI	CCTC	7 cut(s)	88, 244, 266, 398, 684, 942, 1125
Mox20I	TGGCCA	1 cut(s)	35
Mph1103I	ATGCAT	1 cut(s)	91
MroI	TCCGGA	1 cut(s)	1146
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	4 cut(s)	126, 183, 309, 570
MslI	CAYNNNNRTG	2 cut(s)	736, 1100
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	2 cut(s)	593, 818
MspI	CCGG	1 cut(s)	1147
MspR9I	CCNGG	6 cut(s)	216, 366, 534, 540, 659, 768
MunI	CAATTG	1 cut(s)	394
MvaI	CCWGG	6 cut(s)	216, 366, 534, 540, 659, 768
MwoI	GCNNNNNNNGC	4 cut(s)	668, 861, 889, 1111
NdeI	CATATG	2 cut(s)	91, 858
NdeII	GATC	7 cut(s)	94, 103, 286, 355, 433, 476, 1200
NlaIII	CATG	8 cut(s)	240, 268, 426, 630, 642, 735, 1099, 1345
NlaIV	GGNNCC	5 cut(s)	149, 435, 531, 1048, 1078
NmuCI	GTSAC	2 cut(s)	634, 922
NsiI	ATGCAT	1 cut(s)	91
NspI	RCATGY	3 cut(s)	642, 735, 1099
PciI	ACATGT	1 cut(s)	731
PfeI	GAWTC	2 cut(s)	1153, 1327
PflMI	CCANNNNNTGG	1 cut(s)	1265
PfoI	TCCNGGA	1 cut(s)	766
PkrI	GCNGC	4 cut(s)	68, 332, 746, 820
PleI	GAGTC	3 cut(s)	614, 796, 1030
PpsI	GAGTC	3 cut(s)	614, 796, 1030
PpuMI	RGGWCCY	1 cut(s)	530
PscI	ACATGT	1 cut(s)	731
PsiI	TTATAA	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	530
Psp6I	CCWGG	6 cut(s)	214, 364, 532, 538, 657, 766
PspGI	CCWGG	6 cut(s)	214, 364, 532, 538, 657, 766
PspN4I	GGNNCC	5 cut(s)	149, 435, 531, 1048, 1078
PspPI	GGNCC	4 cut(s)	147, 530, 536, 1112
PspPPI	RGGWCCY	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	68
PstNI	CAGNNNCTG	2 cut(s)	658, 821
PsuI	RGATCY	2 cut(s)	433, 1200
PvuII	CAGCTG	2 cut(s)	593, 818
RsaI	GTAC	4 cut(s)	377, 545, 850, 1312
RsaNI	GTAC	4 cut(s)	376, 544, 849, 1311
RseI	CAYNNNNRTG	2 cut(s)	736, 1100
SacI	GAGCTC	1 cut(s)	422
SaqAI	TTAA	4 cut(s)	126, 183, 309, 570
SatI	GCNGC	4 cut(s)	67, 331, 745, 819
Sau3AI	GATC	7 cut(s)	94, 103, 286, 355, 433, 476, 1200
Sau96I	GGNCC	4 cut(s)	147, 530, 536, 1112
SchI	GAGTC	3 cut(s)	615, 797, 1030
ScrFI	CCNGG	6 cut(s)	216, 366, 534, 540, 659, 768
SduI	GDGCHC	2 cut(s)	422, 866
SfaNI	GCATC	3 cut(s)	76, 1128, 1231
SfcI	CTRYAG	2 cut(s)	64, 447
SinI	GGWCC	2 cut(s)	147, 530
SmiMI	CAYNNNNRTG	2 cut(s)	736, 1100
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	852
SstI	GAGCTC	1 cut(s)	422
StyD4I	CCNGG	6 cut(s)	214, 364, 532, 538, 657, 766
TaaI	ACNGT	5 cut(s)	40, 499, 654, 715, 1063
TaiI	ACGT	1 cut(s)	888
TaqI	TCGA	1 cut(s)	475
TatI	WGTACW	2 cut(s)	848, 1310
TfiI	GAWTC	2 cut(s)	1153, 1327
Tru1I	TTAA	4 cut(s)	126, 183, 309, 570
Tru9I	TTAA	4 cut(s)	126, 183, 309, 570
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	2 cut(s)	634, 922
TseI	GCWGC	4 cut(s)	66, 330, 744, 818
Tsp45I	GTSAC	2 cut(s)	634, 922
TspDTI	ATGAA	1 cut(s)	866
TspGWI	ACGGA	3 cut(s)	363, 783, 1337
TspRI	CASTG	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	1265
VpaK11BI	GGWCC	2 cut(s)	147, 530
XapI	RAATTY	5 cut(s)	305, 581, 829, 988, 1008
XceI	RCATGY	3 cut(s)	642, 735, 1099
XspI	CTAG	1 cut(s)	852
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.