Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008082

Physical Location & Seq

Genomic Coordinates Reverse (-)

86678164 .. 86680194

Gene Structure 2031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG646100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAAAAGGCGGGAAGCTCTAGTTAATCTATTTCAAGCATGTAACGCTAGGAAACCATTAGCACAGTTACACTCTCAAACCCTCAAATCTGGGCTCACAAATGACACCTTCTTCGCCACAAAGCTCATTGCTCTGTATTCGAAACACGAGTCACTCGGGCACGCCCGTAAGGTGTTCGACGAAACGCCTCTTAGAAGTGTCCATCTGTGGAACGCTACACTCCGGAGCTACTGTAGAGAGAAGCAATGGGAGGAGACATTGTTTCTCTTTGATAAGATGTTATTATCGGATCGAATGCCGGATAATTTCACTGTATCTATTGCTCTCAAGGCTTGTGCCGGGTTAAGGGTACTTGAGTATGGGAGAGTAGTGCACGGGTTTGTGAAGAGGAATGAGAAGGTTGCTGTGGATGTAATGGTGACGGTTGGGCGGGTTAAGCCTGAGCGAGTGACGCTTGTTAGTGCTGCTTCTGCTTGTGCTCAGCTCTCGAGTTTTAGACTTGGAAGTTGTGTTCATGTGGCCTGTAACTTAGACGAGGGTAAAAAAATCCATGAACTTGCCACTAGGAAAGGTTTCGAGTTAGATGTCACAGTAGCTACAGCCCTGATCGACATGTACATGAAGTGCTCTCAACTTCAAGAAGCAGTTGATCTCTTCAGAAGAATGCCGAAAAAAGATGTGGTTTCTTGGGTTGCTTTGTTAAGTGGGTATGCTCAACATGGGATGGCATACAAATCGATGGAGATCTTTCGTAACATGCTATTAGATGAAACTCAACCTGATGCTGTTGCTATGGTTAAGATTCTTGCAGCGTGTGCAGAATTAGGGAACCTTCAACAAGCTCTTTGCCTCCATGCTTATGTGATTAAAACTGCCTTCAAGGATAATATCTTCGTTGGAGCTTCACTCATAGAGCTGAAGAAGGGGTTAAAGAAGATCTTTGGACAGAGTGTGGTTGAGGCAGGGAGTGAGATCCGTAGTTTTGTTGCCGGAGATAGATTTCATCCTGAATTTGATCGATCTATGGATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

344

Amino Acids

38.59

Weight (kDa)

9.08

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	66 - 113	1.2e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01580
fragaria_vesca	FvH4_6g51580 FvH4_6g51620
malus_domestica	MD07G1177500.v1.1 MD17G1023700.v1.1 MD17G1024400.v1.1 MD17G1024800.v1.1 MD17G1025100.v1.1 MD17G1025800.v1.1 MD17G1026000.v1.1
prunus_persica	Prupe.3G292700_v2.0.a1
pyrus_communis	pycom07g17150 pycom17g02080 pycom17g02110
rosa_laevigata	RLG00000022166
rosa_multiflora	Rmu_sc0000860.1_g000001 Rmu_sc0016793.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079160
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646100 Rh2BG656800 Rh2CG621900 Rh2DG670200
rosa_wichuraiana	Rw2G053060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	222
AciI	CCGC	2 cut(s)	10, 430
AclWI	GGATC	2 cut(s)	297, 967
AcsI	RAATTY	1 cut(s)	1010
AcuI	CTGAAG	2 cut(s)	640, 938
AfaI	GTAC	2 cut(s)	351, 617
AfiI	CCNNNNNNNGG	1 cut(s)	345
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	4 cut(s)	35, 638, 836, 880
AloI	GAACNNNNNNTCC	2 cut(s)	495, 527
AluBI	AGCT	8 cut(s)	17, 124, 228, 484, 596, 842, 902, 916
AluI	AGCT	8 cut(s)	17, 124, 228, 484, 596, 842, 902, 916
Alw21I	GWGCWC	3 cut(s)	375, 481, 629
Alw26I	GTCTC	1 cut(s)	248
Alw44I	GTGCAC	1 cut(s)	371
AlwI	GGATC	2 cut(s)	297, 967
Ama87I	CYCGRG	2 cut(s)	155, 487
Aor13HI	TCCGGA	1 cut(s)	222
AoxI	GGCC	1 cut(s)	519
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	464, 809
ApoI	RAATTY	1 cut(s)	1010
ArsI	GACNNNNNNTTYG	4 cut(s)	95, 127, 134, 166
Asp700I	GAANNNNTTC	1 cut(s)	572
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	430
AsuII	TTCGAA	1 cut(s)	140
AvaI	CYCGRG	2 cut(s)	155, 487
BaeGI	GKGCMC	2 cut(s)	162, 375
BaeI	ACNNNNGTAYC	2 cut(s)	341, 374
BanII	GRGCYC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	146
Bbv12I	GWGCWC	3 cut(s)	375, 481, 629
BbvI	GCAGC	2 cut(s)	451, 821
BccI	CCATC	3 cut(s)	210, 718, 733
BcgI	CGANNNNNNTGC	2 cut(s)	717, 751
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	3 cut(s)	20, 48, 564
BfmI	CTRYAG	2 cut(s)	232, 597
BglII	AGATCT	2 cut(s)	744, 936
BisI	GCNGC	2 cut(s)	465, 810
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	2 cut(s)	466, 811
Bme1390I	CCNGG	1 cut(s)	340
BmeT110I	CYCGRG	2 cut(s)	155, 487
BmiI	GGNNCC	1 cut(s)	830
BmrFI	CCNGG	1 cut(s)	340
BmsI	GCATC	1 cut(s)	772
BplI	GAGNNNNNCTC	2 cut(s)	891, 923
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	140
BpuEI	CTTGAG	2 cut(s)	311, 374
BpuMI	CCSGG	1 cut(s)	340
Bsa29I	ATCGAT	2 cut(s)	737, 1018
BsaBI	GATNNNNATC	1 cut(s)	743
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	4 cut(s)	217, 245, 247, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse3DI	GCAATG	2 cut(s)	126, 251
Bse8I	GATNNNNATC	1 cut(s)	743
BseAI	TCCGGA	1 cut(s)	222
BseCI	ATCGAT	2 cut(s)	737, 1018
BseGI	GGATG	3 cut(s)	415, 729, 1003
BseJI	GATNNNNATC	1 cut(s)	743
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMI	GCAATG	2 cut(s)	126, 251
BseMII	CTCAG	2 cut(s)	432, 494
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	2 cut(s)	162, 375
BseXI	GCAGC	2 cut(s)	451, 821
BsgI	GTGCAG	1 cut(s)	837
BshFI	GGCC	1 cut(s)	521
BshVI	ATCGAT	2 cut(s)	737, 1018
BsiHKAI	GWGCWC	3 cut(s)	375, 481, 629
BsiHKCI	CYCGRG	2 cut(s)	155, 487
BsiSI	CCGG	4 cut(s)	223, 299, 339, 990
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	248
BsmI	GAATGC	2 cut(s)	300, 669
BsnI	GGCC	1 cut(s)	521
BsoBI	CYCGRG	2 cut(s)	155, 487
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	5 cut(s)	96, 162, 375, 481, 629
Bsp13I	TCCGGA	1 cut(s)	222
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	8 cut(s)	289, 606, 649, 744, 936, 972, 1015, 1019
Bsp1720I	GCTNAGC	1 cut(s)	480
BspACI	CCGC	2 cut(s)	10, 430
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	2 cut(s)	433, 493
BspDI	ATCGAT	2 cut(s)	737, 1018
BspEI	TCCGGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	830
BspPI	GGATC	2 cut(s)	297, 967
BspT104I	TTCGAA	1 cut(s)	140
BsrDI	GCAATG	2 cut(s)	126, 251
BsrGI	TGTACA	1 cut(s)	615
BssMI	GATC	8 cut(s)	289, 606, 649, 744, 936, 972, 1015, 1019
BssSI	CACGAG	1 cut(s)	146
Bst2BI	CACGAG	1 cut(s)	146
Bst4CI	ACNGT	5 cut(s)	66, 233, 313, 424, 592
Bst6I	CTCTTC	2 cut(s)	380, 659
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstAUI	TGTACA	1 cut(s)	615
BstBI	TTCGAA	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	4 cut(s)	191, 441, 480, 529
BstF5I	GGATG	3 cut(s)	415, 729, 1003
BstKTI	GATC	8 cut(s)	292, 609, 652, 747, 939, 975, 1018, 1022
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	8 cut(s)	289, 606, 649, 744, 936, 972, 1015, 1019
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 329, 436, 451, 470, 815
BstNSI	RCATGY	3 cut(s)	42, 616, 760
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	2 cut(s)	232, 597
BstSLI	GKGCMC	2 cut(s)	162, 375
BstV1I	GCAGC	2 cut(s)	451, 821
BstX2I	RGATCY	3 cut(s)	744, 936, 972
BstYI	RGATCY	3 cut(s)	744, 936, 972
Bsu15I	ATCGAT	2 cut(s)	737, 1018
BsuRI	GGCC	1 cut(s)	521
BsuTUI	ATCGAT	2 cut(s)	737, 1018
BtsCI	GGATG	3 cut(s)	415, 729, 1003
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	162
ClaI	ATCGAT	2 cut(s)	737, 1018
CseI	GACGC	1 cut(s)	460
Csp6I	GTAC	2 cut(s)	350, 616
CviAII	CATG	8 cut(s)	39, 515, 551, 613, 619, 719, 757, 854
CviQI	GTAC	2 cut(s)	350, 616
DdeI	CTNAG	4 cut(s)	191, 441, 480, 529
DpnI	GATC	8 cut(s)	291, 608, 651, 746, 938, 974, 1017, 1021
DpnII	GATC	8 cut(s)	289, 606, 649, 744, 936, 972, 1015, 1019
Eam1104I	CTCTTC	2 cut(s)	380, 659
EarI	CTCTTC	2 cut(s)	380, 659
Eco24I	GRGCYC	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	640, 938
Eco88I	CYCGRG	2 cut(s)	155, 487
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	8 cut(s)	42, 518, 554, 616, 622, 722, 760, 857
FalI	AAGNNNNNCTT	2 cut(s)	923, 955
FatI	CATG	8 cut(s)	38, 514, 550, 612, 618, 718, 756, 853
FauI	CCCGC	2 cut(s)	3, 423
Fnu4HI	GCNGC	2 cut(s)	465, 810
FokI	GGATG	3 cut(s)	422, 736, 990
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	465, 810
FspBI	CTAG	3 cut(s)	20, 48, 564
GluI	GCNGC	2 cut(s)	465, 810
HaeIII	GGCC	1 cut(s)	521
HapII	CCGG	4 cut(s)	223, 299, 339, 990
HgaI	GACGC	1 cut(s)	460
Hin1II	CATG	8 cut(s)	42, 518, 554, 616, 622, 722, 760, 857
HinfI	GANTC	2 cut(s)	149, 802
HpaII	CCGG	4 cut(s)	223, 299, 339, 990
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	289, 659
Hpy188III	TCNNGA	4 cut(s)	223, 487, 638, 1007
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	5 cut(s)	118, 391, 842, 886, 916
HpyCH4III	ACNGT	5 cut(s)	66, 233, 313, 424, 592
HpyCH4V	TGCA	3 cut(s)	373, 809, 818
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 329, 436, 451, 470, 815
HpyF3I	CTNAG	4 cut(s)	191, 441, 480, 529
Hsp92II	CATG	8 cut(s)	42, 518, 554, 616, 622, 722, 760, 857
Kpn2I	TCCGGA	1 cut(s)	222
Kzo9I	GATC	8 cut(s)	289, 606, 649, 744, 936, 972, 1015, 1019
LmnI	GCTCC	2 cut(s)	225, 899
Lsp1109I	GCAGC	2 cut(s)	451, 821
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	3 cut(s)	20, 48, 564
MaeIII	GTNAC	8 cut(s)	41, 66, 150, 418, 448, 524, 586, 752
MalI	GATC	8 cut(s)	291, 608, 651, 746, 938, 974, 1017, 1021
MboI	GATC	8 cut(s)	289, 606, 649, 744, 936, 972, 1015, 1019
MboII	GAAGA	7 cut(s)	103, 397, 646, 672, 883, 931, 946
MflI	RGATCY	3 cut(s)	744, 936, 972
MhlI	GDGCHC	5 cut(s)	96, 162, 375, 481, 629
MluCI	AATT	3 cut(s)	304, 821, 1010
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	877
MnlI	CCTC	7 cut(s)	92, 198, 244, 381, 529, 860, 952
MroI	TCCGGA	1 cut(s)	222
MroXI	GAANNNNTTC	1 cut(s)	572
MseI	TTAA	7 cut(s)	24, 344, 435, 701, 798, 867, 929
MslI	CAYNNNNRTG	2 cut(s)	617, 858
MspI	CCGG	4 cut(s)	223, 299, 339, 990
MspR9I	CCNGG	1 cut(s)	340
Mva1269I	GAATGC	2 cut(s)	300, 669
MwoI	GCNNNNNNNGC	6 cut(s)	44, 329, 436, 451, 470, 815
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	8 cut(s)	289, 606, 649, 744, 936, 972, 1015, 1019
NlaIII	CATG	8 cut(s)	42, 518, 554, 616, 622, 722, 760, 857
NlaIV	GGNNCC	1 cut(s)	830
NmuCI	GTSAC	4 cut(s)	150, 418, 448, 586
NspI	RCATGY	3 cut(s)	42, 616, 760
NspV	TTCGAA	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	487
PciI	ACATGT	1 cut(s)	612
PctI	GAATGC	2 cut(s)	300, 669
PdmI	GAANNNNTTC	1 cut(s)	572
PfeI	GAWTC	1 cut(s)	802
PkrI	GCNGC	2 cut(s)	466, 811
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PscI	ACATGT	1 cut(s)	612
PspN4I	GGNNCC	1 cut(s)	830
PsuI	RGATCY	3 cut(s)	744, 936, 972
RsaI	GTAC	2 cut(s)	351, 617
RsaNI	GTAC	2 cut(s)	350, 616
RseI	CAYNNNNRTG	2 cut(s)	617, 858
SaqAI	TTAA	7 cut(s)	24, 344, 435, 701, 798, 867, 929
SatI	GCNGC	2 cut(s)	465, 810
Sau3AI	GATC	8 cut(s)	289, 606, 649, 744, 936, 972, 1015, 1019
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	5 cut(s)	96, 162, 375, 481, 629
SfaNI	GCATC	1 cut(s)	772
SfcI	CTRYAG	2 cut(s)	232, 597
Sfr274I	CTCGAG	1 cut(s)	487
SfuI	TTCGAA	1 cut(s)	140
SlaI	CTCGAG	1 cut(s)	487
SmiMI	CAYNNNNRTG	2 cut(s)	617, 858
SmlI	CTYRAG	3 cut(s)	326, 353, 487
SmoI	CTYRAG	3 cut(s)	326, 353, 487
Sse9I	AATT	3 cut(s)	304, 821, 1010
SsiI	CCGC	2 cut(s)	10, 430
SspMI	CTAG	3 cut(s)	20, 48, 564
StyD4I	CCNGG	1 cut(s)	338
TaaI	ACNGT	5 cut(s)	66, 233, 313, 424, 592
TaqI	TCGA	8 cut(s)	140, 177, 292, 488, 576, 609, 737, 1018
TasI	AATT	3 cut(s)	304, 821, 1010
TatI	WGTACW	1 cut(s)	615
TfiI	GAWTC	1 cut(s)	802
Tru1I	TTAA	7 cut(s)	24, 344, 435, 701, 798, 867, 929
Tru9I	TTAA	7 cut(s)	24, 344, 435, 701, 798, 867, 929
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	4 cut(s)	150, 418, 448, 586
TseI	GCWGC	2 cut(s)	464, 809
Tsp45I	GTSAC	4 cut(s)	150, 418, 448, 586
TspDTI	ATGAA	6 cut(s)	17, 503, 567, 635, 783, 992
TspGWI	ACGGA	1 cut(s)	965
TspRI	CASTG	1 cut(s)	316
VneI	GTGCAC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	1010
XceI	RCATGY	3 cut(s)	42, 616, 760
XhoI	CTCGAG	1 cut(s)	487
XmnI	GAANNNNTTC	1 cut(s)	572
XspI	CTAG	3 cut(s)	20, 48, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.