Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008082

Physical Location & Seq

Genomic Coordinates Forward (+)

25713261 .. 25713509

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1177500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGTAATGGTGGGGCACGTTAATCTTGTCCAAGTGACGCTTGTTAGTGTTGTTTCAGCTTGTACTCAGTTATCAAATTTTAGACTTGGAAGTTGTGTTGCTGGTGTTTCTATTAGGAATGGATCCCATGTTGATTTATCTTTAGGTAACGCGTTGCTGAAACTCTATGCAAAGACGAGTTCTGTCAAAACTGCCGCTCGCTTTATTTTGAAGATGCCCAAAAAAATGTGGTTTCTTGGAGCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

83

Amino Acids

8.76

Weight (kDa)

10.4

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01580
fragaria_vesca	FvH4_6g51580 FvH4_6g51620
malus_domestica	MD07G1177500.v1.1 MD17G1023700.v1.1 MD17G1024400.v1.1 MD17G1024800.v1.1 MD17G1025100.v1.1 MD17G1025800.v1.1 MD17G1026000.v1.1
prunus_persica	Prupe.3G292700_v2.0.a1
pyrus_communis	pycom07g17150 pycom17g02080 pycom17g02110
rosa_laevigata	RLG00000022166
rosa_multiflora	Rmu_sc0000860.1_g000001 Rmu_sc0016793.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079160
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646100 Rh2BG656800 Rh2CG621900 Rh2DG670200
rosa_wichuraiana	Rw2G053060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	197
AccII	CGCG	1 cut(s)	152
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	2 cut(s)	117, 130
AcsI	RAATTY	1 cut(s)	76
AfaI	GTAC	1 cut(s)	64
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	2 cut(s)	59, 242
AluI	AGCT	2 cut(s)	59, 242
Alw21I	GWGCWC	1 cut(s)	244
AlwI	GGATC	2 cut(s)	117, 130
ApoI	RAATTY	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	18
BamHI	GGATCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	124
BmsI	GCATC	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	18, 244
Bsp143I	GATC	1 cut(s)	122
BspACI	CCGC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	2 cut(s)	117, 130
BsrBI	CCGCTC	1 cut(s)	197
BssMI	GATC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	152
BstKTI	GATC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	122
BstSLI	GKGCMC	1 cut(s)	18
BstUI	CGCG	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	199
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	2 cut(s)	128, 246
CviJI	RGCY	2 cut(s)	59, 242
CviKI_1	RGCY	2 cut(s)	59, 242
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	244
FaeI	CATG	2 cut(s)	131, 249
FaiI	YATR	3 cut(s)	129, 168, 247
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FatI	CATG	2 cut(s)	127, 245
Fnu4HI	GCNGC	1 cut(s)	195
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
HgaI	GACGC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	131, 249
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	131, 249
Kzo9I	GATC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	239, 247
LpnPI	CCDG	1 cut(s)	87
LweI	GCATC	1 cut(s)	204
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	34, 146
MalI	GATC	1 cut(s)	124
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	1 cut(s)	122
MboII	GAAGA	1 cut(s)	223
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	2 cut(s)	18, 244
MluCI	AATT	1 cut(s)	76
MluI	ACGCGT	1 cut(s)	150
MseI	TTAA	1 cut(s)	21
MvnI	CGCG	1 cut(s)	152
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	2 cut(s)	131, 249
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	1 cut(s)	122
SduI	GDGCHC	2 cut(s)	18, 244
SetI	ASST	4 cut(s)	21, 61, 148, 244
SfaNI	GCATC	1 cut(s)	204
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	1 cut(s)	195
SstI	GAGCTC	1 cut(s)	244
TaiI	ACGT	1 cut(s)	21
TasI	AATT	1 cut(s)	76
TatI	WGTACW	1 cut(s)	62
TauI	GCSGC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.