Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008082

Physical Location & Seq

Genomic Coordinates Forward (+)

1790676 .. 1791613

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1024400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCTCAGGAGCTACTGTAGAGAGGACCGATGGGAGGAGACCTTGTGTCTATTCCATAACATGATGTCTGAGTCAAGAGACAATGATGAAAAGCCTGATAATTTCACCATTCCCATTGCTCTGAAGGCGTGTGCGAGGTTAAGGGCGCTTGCGTGTGGAAAAATAATACACGGGTTGGTGAAGAAACATGAGAAGGTAGCATTGGATATGTTTATGGGTTCTGCGTTGATTGAATTGTATTCCAAATGCAGAGAAATGGGCGAAGTTGTGAAAGTGTTTGATGAGTTTTCGCAACCAGATGTGTTTTTGTGGACTTCTATGGTTACTGGATATGAGCAGAATGCTTGTGCTCAGTTATCAAATTTTACAATTGGAAGTTGTGTGCATGGTATTTCTATTAGGAACCGATTCGACTCTGATTTATCTTTGGGTAATGCGTTACTAAATCTCTATGGAAAGACAGGTTCTGTCAAAACTGCCACTAGGTTGTTCATGAAGATGCCGGAAAAAGATGTGGTTTCTTGGAGCTCCATGATTACGTGTTACACTCATAATAGCGATGTAATAGAAGCGCTAAATCTTTTCAACGAAATGATTGATATGAGAATCGAACCTATTTCAGTGACGCTGGTAAGTGCATTGCAAGCATGTGCACTGGCAGGTAATTTAGAAGAAGGCAAGAAGATCCACGAAATCGCTACTAGGAAGTGTTTCGAGTTAGATATCAAGGTAGCTACGGGCCTGATTGATATGTACATGAAGTGCTCTGCACCCGAAAAAGCAGGTGATCTCTTTAGTAGAATGCCAAAGAAAGATGTGGTTTCGTGGGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

279

Amino Acids

31.27

Weight (kDa)

6.11

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	170 - 218	9.9e-08	PPR repeat family
PPR	PF01535	173 - 202	2.5e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01580
fragaria_vesca	FvH4_6g51580 FvH4_6g51620
malus_domestica	MD07G1177500.v1.1 MD17G1023700.v1.1 MD17G1024400.v1.1 MD17G1024800.v1.1 MD17G1025100.v1.1 MD17G1025800.v1.1 MD17G1026000.v1.1
prunus_persica	Prupe.3G292700_v2.0.a1
pyrus_communis	pycom07g17150 pycom17g02080 pycom17g02110
rosa_laevigata	RLG00000022166
rosa_multiflora	Rmu_sc0000860.1_g000001 Rmu_sc0016793.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079160
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646100 Rh2BG656800 Rh2CG621900 Rh2DG670200
rosa_wichuraiana	Rw2G053060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	773
Acc36I	ACCTGC	2 cut(s)	650, 773
AclWI	GGATC	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	755
AfeI	AGCGCT	1 cut(s)	573
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	539
AgsI	TTSAA	2 cut(s)	233, 586
AhdI	GACNNNNNGTC	1 cut(s)	45
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	3 cut(s)	12, 528, 734
AluI	AGCT	3 cut(s)	12, 528, 734
Alw21I	GWGCWC	4 cut(s)	352, 530, 655, 767
Alw26I	GTCTC	2 cut(s)	32, 72
Alw44I	GTGCAC	1 cut(s)	651
AlwI	GGATC	1 cut(s)	679
AlwNI	CAGNNNCTG	1 cut(s)	467
Aor51HI	AGCGCT	1 cut(s)	573
AoxI	GGCC	1 cut(s)	739
ApaLI	GTGCAC	1 cut(s)	651
ApeKI	GCWGC	1 cut(s)	830
ApoI	RAATTY	1 cut(s)	361
Asp700I	GAANNNNTTC	2 cut(s)	407, 710
AspLEI	GCGC	2 cut(s)	148, 574
AspS9I	GGNCC	2 cut(s)	25, 739
AsuHPI	GGTGA	3 cut(s)	97, 190, 797
AvaII	GGWCC	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	530
Bbv12I	GWGCWC	4 cut(s)	352, 530, 655, 767
BbvI	GCAGC	1 cut(s)	817
BccI	CCATC	1 cut(s)	24
BcoDI	GTCTC	2 cut(s)	32, 72
BfaI	CTAG	3 cut(s)	483, 702, 835
BfmI	CTRYAG	1 cut(s)	16
BfoI	RGCGCY	2 cut(s)	149, 575
BfuAI	ACCTGC	2 cut(s)	650, 773
BisI	GCNGC	1 cut(s)	831
BlsI	GCNGC	1 cut(s)	832
Bme18I	GGWCC	1 cut(s)	25
BmeRI	GACNNNNNGTC	1 cut(s)	45
BmgT120I	GGNCC	2 cut(s)	25, 739
BmiI	GGNNCC	1 cut(s)	404
BmsI	GCATC	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	5
BsaAI	YACGTR	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	32
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 31, 59
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	331, 660
Bse3DI	GCAATG	2 cut(s)	114, 638
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	2 cut(s)	114, 638
BseMII	CTCAG	3 cut(s)	19, 60, 365
BseNI	ACTGG	2 cut(s)	331, 660
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	655
BseXI	GCAGC	1 cut(s)	817
BsgI	GTGCAG	1 cut(s)	753
BshFI	GGCC	1 cut(s)	741
BsiHKAI	GWGCWC	4 cut(s)	352, 530, 655, 767
BsiSI	CCGG	1 cut(s)	503
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	32, 72
BsmI	GAATGC	2 cut(s)	346, 807
BsnI	GGCC	1 cut(s)	741
Bso31I	GGTCTC	1 cut(s)	32
Bsp1286I	GDGCHC	4 cut(s)	352, 530, 655, 767
Bsp1407I	TGTACA	1 cut(s)	753
Bsp143I	GATC	2 cut(s)	684, 787
BspANI	GGCC	1 cut(s)	741
BspCNI	CTCAG	3 cut(s)	18, 61, 364
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	404
BspMI	ACCTGC	2 cut(s)	650, 773
BspPI	GGATC	1 cut(s)	679
BspTNI	GGTCTC	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	114, 638
BsrGI	TGTACA	1 cut(s)	753
BsrI	ACTGG	2 cut(s)	331, 660
BssMI	GATC	2 cut(s)	684, 787
Bst4CI	ACNGT	1 cut(s)	17
BstAUI	TGTACA	1 cut(s)	753
BstBAI	YACGTR	1 cut(s)	540
BstC8I	GCNNGC	2 cut(s)	150, 645
BstDEI	CTNAG	3 cut(s)	5, 69, 351
BstH2I	RGCGCY	2 cut(s)	149, 575
BstHHI	GCGC	2 cut(s)	148, 574
BstKTI	GATC	2 cut(s)	687, 790
BstMAI	GTCTC	2 cut(s)	32, 72
BstMBI	GATC	2 cut(s)	684, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 644
BstNSI	RCATGY	1 cut(s)	651
BstSFI	CTRYAG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	655
BstV1I	GCAGC	1 cut(s)	817
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
BsuRI	GGCC	1 cut(s)	741
BtgZI	GCGATG	1 cut(s)	573
BtsIMutI	CAGTG	2 cut(s)	627, 653
BveI	ACCTGC	2 cut(s)	650, 773
Cac8I	GCNNGC	2 cut(s)	150, 645
CaiI	CAGNNNCTG	1 cut(s)	467
CciI	TCATGA	1 cut(s)	492
CfoI	GCGC	2 cut(s)	148, 574
Cfr13I	GGNCC	2 cut(s)	25, 739
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	1 cut(s)	754
CviAII	CATG	7 cut(s)	61, 188, 386, 493, 532, 648, 757
CviJI	RGCY	6 cut(s)	12, 94, 528, 734, 741, 830
CviKI_1	RGCY	6 cut(s)	12, 94, 528, 734, 741, 830
CviQI	GTAC	1 cut(s)	754
DdeI	CTNAG	3 cut(s)	5, 69, 351
DpnI	GATC	2 cut(s)	686, 789
DpnII	GATC	2 cut(s)	684, 787
DriI	GACNNNNNGTC	1 cut(s)	45
Eam1105I	GACNNNNNGTC	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	530
Eco31I	GGTCTC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	25
Eco47III	AGCGCT	1 cut(s)	573
Eco53kI	GAGCTC	1 cut(s)	528
Eco57I	CTGAAG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	528
EcoRV	GATATC	1 cut(s)	724
EcoT38I	GRGCYC	1 cut(s)	530
FaeI	CATG	7 cut(s)	64, 191, 389, 496, 535, 651, 760
FatI	CATG	7 cut(s)	60, 187, 385, 492, 531, 647, 756
Fnu4HI	GCNGC	1 cut(s)	831
FriOI	GRGCYC	1 cut(s)	530
Fsp4HI	GCNGC	1 cut(s)	831
FspBI	CTAG	3 cut(s)	483, 702, 835
GlaI	GCGC	2 cut(s)	147, 573
GluI	GCNGC	1 cut(s)	831
HaeII	RGCGCY	2 cut(s)	149, 575
HaeIII	GGCC	1 cut(s)	741
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	634
HhaI	GCGC	2 cut(s)	148, 574
Hin1II	CATG	7 cut(s)	64, 191, 389, 496, 535, 651, 760
Hin6I	GCGC	2 cut(s)	146, 572
HinP1I	GCGC	2 cut(s)	146, 572
HinfI	GANTC	4 cut(s)	71, 408, 413, 606
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	3 cut(s)	97, 190, 797
Hpy166II	GTNNAC	2 cut(s)	312, 653
Hpy188I	TCNGA	3 cut(s)	70, 123, 418
Hpy188III	TCNNGA	3 cut(s)	7, 75, 493
Hpy8I	GTNNAC	2 cut(s)	312, 653
HpyAV	CCTTC	3 cut(s)	118, 187, 668
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	6 cut(s)	249, 385, 638, 643, 653, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 644
HpyF3I	CTNAG	3 cut(s)	5, 69, 351
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	7 cut(s)	64, 191, 389, 496, 535, 651, 760
HspAI	GCGC	2 cut(s)	146, 572
Kzo9I	GATC	2 cut(s)	684, 787
LmnI	GCTCC	3 cut(s)	9, 525, 533
Lsp1109I	GCAGC	1 cut(s)	817
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	3 cut(s)	483, 702, 835
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	4 cut(s)	322, 438, 542, 622
MalI	GATC	2 cut(s)	686, 789
MboI	GATC	2 cut(s)	684, 787
MboII	GAAGA	4 cut(s)	193, 508, 683, 694
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	1 cut(s)	684
MhlI	GDGCHC	4 cut(s)	352, 530, 655, 767
MluCI	AATT	5 cut(s)	100, 233, 361, 369, 664
MlyI	GAGTC	2 cut(s)	80, 407
MnlI	CCTC	3 cut(s)	16, 28, 129
MroXI	GAANNNNTTC	2 cut(s)	407, 710
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	497
MspI	CCGG	1 cut(s)	503
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	2 cut(s)	346, 807
MwoI	GCNNNNNNNGC	2 cut(s)	125, 644
NdeII	GATC	2 cut(s)	684, 787
NlaIII	CATG	7 cut(s)	64, 191, 389, 496, 535, 651, 760
NlaIV	GGNNCC	1 cut(s)	404
NmuCI	GTSAC	1 cut(s)	622
NspI	RCATGY	1 cut(s)	651
PagI	TCATGA	1 cut(s)	492
PaqCI	CACCTGC	1 cut(s)	773
PctI	GAATGC	2 cut(s)	346, 807
PdmI	GAANNNNTTC	2 cut(s)	407, 710
PfeI	GAWTC	2 cut(s)	408, 606
PkrI	GCNGC	1 cut(s)	832
PleI	GAGTC	2 cut(s)	79, 407
PpsI	GAGTC	2 cut(s)	79, 407
Ppu21I	YACGTR	1 cut(s)	540
Psp124BI	GAGCTC	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	404
PspPI	GGNCC	2 cut(s)	25, 739
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	684
RsaI	GTAC	1 cut(s)	755
RsaNI	GTAC	1 cut(s)	754
RseI	CAYNNNNRTG	1 cut(s)	497
SacI	GAGCTC	1 cut(s)	530
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	1 cut(s)	831
Sau3AI	GATC	2 cut(s)	684, 787
Sau96I	GGNCC	2 cut(s)	25, 739
SchI	GAGTC	2 cut(s)	80, 407
SduI	GDGCHC	4 cut(s)	352, 530, 655, 767
SfaNI	GCATC	1 cut(s)	489
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	497
Sse9I	AATT	5 cut(s)	100, 233, 361, 369, 664
SspMI	CTAG	3 cut(s)	483, 702, 835
SstI	GAGCTC	1 cut(s)	530
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	3 cut(s)	411, 609, 714
TaqII	GACCGA	1 cut(s)	42
TasI	AATT	5 cut(s)	100, 233, 361, 369, 664
TatI	WGTACW	1 cut(s)	753
TfiI	GAWTC	2 cut(s)	408, 606
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	2 cut(s)	627, 660
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	1 cut(s)	830
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	4 cut(s)	102, 481, 509, 773
TspRI	CASTG	2 cut(s)	627, 660
VneI	GTGCAC	1 cut(s)	651
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	651
XmnI	GAANNNNTTC	2 cut(s)	407, 710
XspI	CTAG	3 cut(s)	483, 702, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.