Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008082

Physical Location & Seq

Genomic Coordinates Forward (+)

1821638 .. 1823071

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1025100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGATGTCTGAGTCAAGAGGTAATGATGAAAAGCCTGATAATTTCACCATTCCCATTGCTCTGAAGGCGTGTGCGAGGTTAAGGGCGTGTGCGAGGTTAAGGGCGTTCGCGTGTGGAAAAATAATACATGGGTTTGTGAAGAAACATGAGAAGGTTGCATTGGATATGTTTGTAGGTTCTGCATTGATTGAATTGTATTCCAAATGCGGACAAATGGGTGAGGCTGTGAAAGTGTTTGACGAGCCGACATTCACCTCTCCTAGACCCTACGTAAAGCGGGAGCCTTGTACACTGAATGGTGATCCTGAAGAAGCATTGGAGTTTTTCTCCCGAATGGTGATGGTGGGGCGCATTAATCATGACCGAGTGACGCTTATTAGTGCTGTTTTGGCTTGTGCTCAGTTATCAAATTTTAGAATTGGAAGTTTTGTGCGTAGTGTTTCTATTAGGAATGGGTTCAACTCTAATTTATCTTTAGGTAATGCGTTGCTAATTCTATATGCAAAGACAGGTTCTGTCAAAACTGCCGCTAGGTTGTTCATGAAGATGCCGGAAAAAGATGTGGTTTCTTGGAGCTCCATGATTGCAACCGAACCTAATTTAGTGACTCTGGTATGTGCATTGCAAGCATGTGCACTGGCAGGTAATTTAGAAGAAGGTAAGAAGATCCACGAAATTGCTACTAAGAAGTGTTTCGAGTTAGATATCAAGGTAGCTACAGCCCTGATTGATATGTACATGAAGTGCTCTGCACCCGAAAAAGTAGGTGATCTCTTCAATATAATGCCAAAGAAAGATGTGGTTTCGTGGGCTGCCTTGTTGAGCGGGTATGCTCATAACGGAATGGCATACAAGTCAATTGGGGTCTTTCGCGACATGTTATTAGACAAAACTAATCCTGATGTCGTTGCTATGTTCAAGCTTCGTGCAGCTTGTTCGGAATTAGGGATTCTTCAACAAGCTTTTTGCCTCCATGCTTATGTGATTAAACGCGCCTTCAAGAATAACATCTTTGTTGAAGCTTCACTCATAGAGTTATACTCGAAATGCGGCAGCATAGGCAATGATGTCCTATTATTTGAAGGGATAACAGACAAAGATGTCGTTATCTGGAGTGCAATGATGGCAGGTTATGGAGTTCATGGGCAAGGAGAAGTAGCTTTAAAAGTATTTGATCGGATGGTTAAGCATTCAAATGTCAAGCCTAATGATGTAACATTTCTCTCGATTTTATCTGCGTGTAGCCATTCGGGTTTGGTTGAAGAAGGCATTGAGATATTCAACACGATGTTGCATGAATACCAACTTAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

439

Amino Acids

48.31

Weight (kDa)

8.54

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	366 - 415	1.6e-10	PPR repeat family
PPR	PF01535	369 - 397	7.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01580
fragaria_vesca	FvH4_6g51580 FvH4_6g51620
malus_domestica	MD07G1177500.v1.1 MD17G1023700.v1.1 MD17G1024400.v1.1 MD17G1024800.v1.1 MD17G1025100.v1.1 MD17G1025800.v1.1 MD17G1026000.v1.1
prunus_persica	Prupe.3G292700_v2.0.a1
pyrus_communis	pycom07g17150 pycom17g02080 pycom17g02110
rosa_laevigata	RLG00000022166
rosa_multiflora	Rmu_sc0000860.1_g000001 Rmu_sc0016793.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079160
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646100 Rh2BG656800 Rh2CG621900 Rh2DG670200
rosa_wichuraiana	Rw2G053060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1100
Acc36I	ACCTGC	2 cut(s)	632, 1118
AccBSI	CCGCTC	1 cut(s)	825
AccII	CGCG	3 cut(s)	110, 873, 993
AciI	CCGC	5 cut(s)	207, 277, 528, 825, 1050
AclWI	GGATC	2 cut(s)	296, 661
AcsI	RAATTY	1 cut(s)	409
AcuI	CTGAAG	2 cut(s)	83, 327
AfaI	GTAC	2 cut(s)	289, 737
AflII	CTTAAG	1 cut(s)	1307
AflIII	ACRYGT	1 cut(s)	876
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	7 cut(s)	576, 716, 922, 932, 962, 1022, 1160
AluI	AGCT	7 cut(s)	576, 716, 922, 932, 962, 1022, 1160
Alw21I	GWGCWC	4 cut(s)	400, 578, 637, 749
Alw44I	GTGCAC	1 cut(s)	633
AlwI	GGATC	2 cut(s)	296, 661
AlwNI	CAGNNNCTG	1 cut(s)	515
ApaLI	GTGCAC	1 cut(s)	633
ApeKI	GCWGC	3 cut(s)	812, 929, 1053
ApoI	RAATTY	1 cut(s)	409
AseI	ATTAAT	1 cut(s)	354
Asp700I	GAANNNNTTC	2 cut(s)	455, 692
AspLEI	GCGC	2 cut(s)	351, 995
AsuHPI	GGTGA	6 cut(s)	37, 230, 244, 311, 349, 779
BaeGI	GKGCMC	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	578
Bbv12I	GWGCWC	4 cut(s)	400, 578, 637, 749
BbvI	GCAGC	3 cut(s)	799, 941, 1065
BccI	CCATC	3 cut(s)	334, 1117, 1174
BcgI	CGANNNNNNTGC	2 cut(s)	918, 952
BfaI	CTAG	2 cut(s)	261, 531
BfmI	CTRYAG	1 cut(s)	717
BfrI	CTTAAG	1 cut(s)	1307
BfuAI	ACCTGC	2 cut(s)	632, 1118
BisI	GCNGC	5 cut(s)	528, 813, 930, 1051, 1054
BlsI	GCNGC	5 cut(s)	529, 814, 931, 1052, 1055
BmiI	GGNNCC	1 cut(s)	282
BmsI	GCATC	1 cut(s)	537
BplI	GAGNNNNNCTC	4 cut(s)	311, 343, 1025, 1057
BpmI	CTGGAG	1 cut(s)	1132
BsaAI	YACGTR	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	642
Bse3DI	GCAATG	4 cut(s)	54, 620, 1069, 1125
BseGI	GGATG	1 cut(s)	1185
BseMI	GCAATG	4 cut(s)	54, 620, 1069, 1125
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	642
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	3 cut(s)	799, 941, 1065
BsgI	GTGCAG	2 cut(s)	735, 948
Bsh1236I	CGCG	3 cut(s)	110, 873, 993
BsiHKAI	GWGCWC	4 cut(s)	400, 578, 637, 749
BsiSI	CCGG	1 cut(s)	551
BsmI	GAATGC	1 cut(s)	1189
Bsp1286I	GDGCHC	4 cut(s)	400, 578, 637, 749
Bsp1407I	TGTACA	2 cut(s)	287, 735
Bsp143I	GATC	4 cut(s)	301, 666, 769, 1174
Bsp68I	TCGCGA	1 cut(s)	873
BspACI	CCGC	5 cut(s)	207, 277, 528, 825, 1050
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	3 cut(s)	110, 873, 993
BspHI	TCATGA	2 cut(s)	358, 540
BspLI	GGNNCC	1 cut(s)	282
BspMI	ACCTGC	2 cut(s)	632, 1118
BspPI	GGATC	2 cut(s)	296, 661
BspTI	CTTAAG	1 cut(s)	1307
BsrBI	CCGCTC	1 cut(s)	825
BsrDI	GCAATG	4 cut(s)	54, 620, 1069, 1125
BsrGI	TGTACA	2 cut(s)	287, 735
BsrI	ACTGG	1 cut(s)	642
BssMI	GATC	4 cut(s)	301, 666, 769, 1174
Bst6I	CTCTTC	1 cut(s)	779
BstAFI	CTTAAG	1 cut(s)	1307
BstAUI	TGTACA	2 cut(s)	287, 735
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	3 cut(s)	9, 399, 684
BstF5I	GGATG	1 cut(s)	1185
BstFNI	CGCG	3 cut(s)	110, 873, 993
BstHHI	GCGC	2 cut(s)	351, 995
BstKTI	GATC	4 cut(s)	304, 669, 772, 1177
BstMBI	GATC	4 cut(s)	301, 666, 769, 1174
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 389, 626, 1059, 1124
BstNSI	RCATGY	2 cut(s)	633, 880
BstSFI	CTRYAG	1 cut(s)	717
BstSLI	GKGCMC	1 cut(s)	637
BstSNI	TACGTA	1 cut(s)	271
BstUI	CGCG	3 cut(s)	110, 873, 993
BstV1I	GCAGC	3 cut(s)	799, 941, 1065
BstX2I	RGATCY	1 cut(s)	666
BstYI	RGATCY	1 cut(s)	666
BtsCI	GGATG	1 cut(s)	1185
BtsIMutI	CAGTG	2 cut(s)	290, 635
BtuMI	TCGCGA	1 cut(s)	873
BveI	ACCTGC	2 cut(s)	632, 1118
Cac8I	GCNNGC	1 cut(s)	627
CaiI	CAGNNNCTG	1 cut(s)	515
CciI	TCATGA	2 cut(s)	358, 540
CfoI	GCGC	2 cut(s)	351, 995
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	288, 736
CviQI	GTAC	2 cut(s)	288, 736
DdeI	CTNAG	3 cut(s)	9, 399, 684
DpnI	GATC	4 cut(s)	303, 668, 771, 1176
DpnII	GATC	4 cut(s)	301, 666, 769, 1174
DraI	TTTAAA	1 cut(s)	1164
DrdI	GACNNNNNNGTC	1 cut(s)	1100
DseDI	GACNNNNNNGTC	1 cut(s)	1100
Eam1104I	CTCTTC	1 cut(s)	779
EarI	CTCTTC	1 cut(s)	779
Ecl136II	GAGCTC	1 cut(s)	576
Eco105I	TACGTA	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	578
Eco32I	GATATC	1 cut(s)	706
Eco53kI	GAGCTC	1 cut(s)	576
Eco57I	CTGAAG	2 cut(s)	83, 327
EcoICRI	GAGCTC	1 cut(s)	576
EcoRV	GATATC	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	578
FauI	CCCGC	2 cut(s)	270, 818
Fnu4HI	GCNGC	5 cut(s)	528, 813, 930, 1051, 1054
FokI	GGATG	1 cut(s)	1192
FriOI	GRGCYC	1 cut(s)	578
Fsp4HI	GCNGC	5 cut(s)	528, 813, 930, 1051, 1054
FspBI	CTAG	2 cut(s)	261, 531
GlaI	GCGC	2 cut(s)	350, 994
GluI	GCNGC	5 cut(s)	528, 813, 930, 1051, 1054
GsuI	CTGGAG	1 cut(s)	1132
HapII	CCGG	1 cut(s)	551
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	2 cut(s)	351, 995
Hin6I	GCGC	2 cut(s)	349, 993
HinP1I	GCGC	2 cut(s)	349, 993
HindIII	AAGCTT	3 cut(s)	920, 960, 1020
HinfI	GANTC	3 cut(s)	11, 607, 949
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	6 cut(s)	37, 230, 244, 311, 349, 779
Hpy166II	GTNNAC	2 cut(s)	290, 635
Hpy188I	TCNGA	4 cut(s)	10, 63, 940, 1179
Hpy8I	GTNNAC	2 cut(s)	290, 635
HpyAV	CCTTC	6 cut(s)	58, 145, 650, 1006, 1076, 1259
HpyCH4IV	ACGT	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 389, 626, 1059, 1124
HpyF3I	CTNAG	3 cut(s)	9, 399, 684
HpySE526I	ACGT	1 cut(s)	270
HspAI	GCGC	2 cut(s)	349, 993
Kzo9I	GATC	4 cut(s)	301, 666, 769, 1174
LmnI	GCTCC	3 cut(s)	280, 573, 581
Lsp1109I	GCAGC	3 cut(s)	799, 941, 1065
LweI	GCATC	1 cut(s)	537
MaeI	CTAG	2 cut(s)	261, 531
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	3 cut(s)	367, 604, 1213
MalI	GATC	4 cut(s)	303, 668, 771, 1176
MbiI	CCGCTC	1 cut(s)	825
MboI	GATC	4 cut(s)	301, 666, 769, 1174
MboII	GAAGA	8 cut(s)	151, 320, 556, 665, 676, 766, 944, 1274
MfeI	CAATTG	1 cut(s)	858
MflI	RGATCY	1 cut(s)	666
MhlI	GDGCHC	4 cut(s)	400, 578, 637, 749
MlyI	GAGTC	2 cut(s)	20, 601
MnlI	CCTC	6 cut(s)	11, 69, 87, 214, 265, 980
MroXI	GAANNNNTTC	2 cut(s)	455, 692
MseI	TTAA	7 cut(s)	80, 98, 354, 987, 1163, 1185, 1308
MslI	CAYNNNNRTG	3 cut(s)	545, 978, 1194
MspCI	CTTAAG	1 cut(s)	1307
MspI	CCGG	1 cut(s)	551
MunI	CAATTG	1 cut(s)	858
Mva1269I	GAATGC	1 cut(s)	1189
MvnI	CGCG	3 cut(s)	110, 873, 993
MwoI	GCNNNNNNNGC	5 cut(s)	65, 389, 626, 1059, 1124
NdeII	GATC	4 cut(s)	301, 666, 769, 1174
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	2 cut(s)	367, 604
NruI	TCGCGA	1 cut(s)	873
NspI	RCATGY	2 cut(s)	633, 880
PagI	TCATGA	2 cut(s)	358, 540
PciI	ACATGT	1 cut(s)	876
PctI	GAATGC	1 cut(s)	1189
PdmI	GAANNNNTTC	2 cut(s)	455, 692
PfeI	GAWTC	1 cut(s)	949
PkrI	GCNGC	5 cut(s)	529, 814, 931, 1052, 1055
PleI	GAGTC	2 cut(s)	19, 601
PpsI	GAGTC	2 cut(s)	19, 601
Ppu21I	YACGTR	1 cut(s)	271
PscI	ACATGT	1 cut(s)	876
PshBI	ATTAAT	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	578
PspN4I	GGNNCC	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	666
RruI	TCGCGA	1 cut(s)	873
RsaI	GTAC	2 cut(s)	289, 737
RsaNI	GTAC	2 cut(s)	288, 736
RseI	CAYNNNNRTG	3 cut(s)	545, 978, 1194
SacI	GAGCTC	1 cut(s)	578
SaqAI	TTAA	7 cut(s)	80, 98, 354, 987, 1163, 1185, 1308
SatI	GCNGC	5 cut(s)	528, 813, 930, 1051, 1054
Sau3AI	GATC	4 cut(s)	301, 666, 769, 1174
SchI	GAGTC	2 cut(s)	20, 601
SduI	GDGCHC	4 cut(s)	400, 578, 637, 749
SfaNI	GCATC	1 cut(s)	537
SfcI	CTRYAG	1 cut(s)	717
SmiMI	CAYNNNNRTG	3 cut(s)	545, 978, 1194
SmlI	CTYRAG	1 cut(s)	1307
SmoI	CTYRAG	1 cut(s)	1307
SnaBI	TACGTA	1 cut(s)	271
SsiI	CCGC	5 cut(s)	207, 277, 528, 825, 1050
SspMI	CTAG	2 cut(s)	261, 531
SstI	GAGCTC	1 cut(s)	578
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	3 cut(s)	696, 1043, 1226
TaqII	GACCGA	1 cut(s)	378
TatI	WGTACW	2 cut(s)	287, 735
TauI	GCSGC	2 cut(s)	530, 1053
TfiI	GAWTC	1 cut(s)	949
Tru1I	TTAA	7 cut(s)	80, 98, 354, 987, 1163, 1185, 1308
Tru9I	TTAA	7 cut(s)	80, 98, 354, 987, 1163, 1185, 1308
TscAI	CASTG	2 cut(s)	297, 642
TseFI	GTSAC	2 cut(s)	367, 604
TseI	GCWGC	3 cut(s)	812, 929, 1053
Tsp45I	GTSAC	2 cut(s)	367, 604
TspDTI	ATGAA	6 cut(s)	42, 529, 557, 755, 1130, 1311
TspGWI	ACGGA	1 cut(s)	855
TspRI	CASTG	2 cut(s)	297, 642
Vha464I	CTTAAG	1 cut(s)	1307
VneI	GTGCAC	1 cut(s)	633
VspI	ATTAAT	1 cut(s)	354
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	2 cut(s)	633, 880
XmnI	GAANNNNTTC	2 cut(s)	455, 692
XspI	CTAG	2 cut(s)	261, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.