Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008082

Physical Location & Seq

Genomic Coordinates Forward (+)

1717676 .. 1718623

Gene Structure 948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1023700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGATACCTGAGTCAAGAGGCAATGATGAAAAGCCTGATAATTTCACCATTCTCATTGCTCTGAAGGCGTGTGCGAGGTTAAGGGCGCTAGTGTGTGGAAAAATAATACATGGGCTTGTGAAGAAACATGAGAAGGTAGCATTGGATATGTTTGTAGGTTCTCTGTTGATTAAATTGTATTCCAAATGTGGAGAAATGGGCGAGGCTGTGAAAGTGTTTGATGAGTTTCCGCAACTGGATGTGTTTTTGTGGACTTCTATGGTTACTGGATATGAGCAGAATGGTGATCCTGAAGAAGCGTTGGAGTTCTTCTCCCGAATTGTGATGGTGGGGATCATTAATCCTGACCGAGTGATGCTTGTTAGTGTTGTTTCAACTTGTGCGCAGTTATCAAATTTTAGAATTGGAAGTTGTGTGCATGGTGTTTCTATTAGGAACGGATTCGACTCTGATTTATCTTTAGGTAATGTGTTGCTAAATCTCTATGCAAAGGCAGGTTCTGTCAAAACTGCCGCTAGGTTGTTCATGAAGATGCCGGAAAAAGATGAAGTTTCTTGGAGCTCCATAATTGCCTGTTACGTTCATAATGGGGATGTAACAGAAGCGTTAAATCTTTTCAACGAAATGATTGATATGAGAATCGAACCTAATTCAGTGACTCTGGTAAGTGCATTGCAAGCATGTGCATTGGCAGGTAATTTAGAAGAAGGTAAGAAGATCCACGACATCGGTACTAGGAAGTGTTTCGAGTTAGATATCAAGGTAGCTACTGCCCTGATTGATATGTACATGAAATGCTCTGCACCCGAAAAAGCAGGTGTTCTCTTCAATAGAATGCCAAAGAAAGATGTGGTTTCGTGGGCTGCCTTGTTAAGCGGGTATGCTCATAACGGAATGGCATACAAGTCAATTGGGGTCTTTCGCAGCATGCTATCACACGAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

316

Amino Acids

34.72

Weight (kDa)

6.4

Isoelectric Point (pI)

28.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	83 - 111	7.3e-06	PPR repeat
PPR_2	PF13041	182 - 229	2.1e-11	PPR repeat family
PPR	PF01535	184 - 213	9.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01580
fragaria_vesca	FvH4_6g51580 FvH4_6g51620
malus_domestica	MD07G1177500.v1.1 MD17G1023700.v1.1 MD17G1024400.v1.1 MD17G1024800.v1.1 MD17G1025100.v1.1 MD17G1025800.v1.1 MD17G1026000.v1.1
prunus_persica	Prupe.3G292700_v2.0.a1
pyrus_communis	pycom07g17150 pycom17g02080 pycom17g02110
rosa_laevigata	RLG00000022166
rosa_multiflora	Rmu_sc0000860.1_g000001 Rmu_sc0016793.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079160
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646100 Rh2BG656800 Rh2CG621900 Rh2DG670200
rosa_wichuraiana	Rw2G053060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	806
Acc16I	TGCGCA	1 cut(s)	384
Acc36I	ACCTGC	3 cut(s)	485, 683, 806
AciI	CCGC	3 cut(s)	230, 513, 876
AclWI	GGATC	3 cut(s)	281, 341, 712
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	2 cut(s)	83, 312
AfaI	GTAC	2 cut(s)	733, 788
AgsI	TTSAA	3 cut(s)	375, 619, 829
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	2 cut(s)	561, 767
AluI	AGCT	2 cut(s)	561, 767
Alw21I	GWGCWC	1 cut(s)	563
AlwI	GGATC	3 cut(s)	281, 341, 712
AlwNI	CAGNNNCTG	1 cut(s)	500
ApeKI	GCWGC	2 cut(s)	863, 924
ApoI	RAATTY	1 cut(s)	394
AseI	ATTAAT	1 cut(s)	339
Asp700I	GAANNNNTTC	2 cut(s)	440, 743
AspLEI	GCGC	2 cut(s)	88, 385
AsuHPI	GGTGA	2 cut(s)	37, 296
BaeI	ACNNNNGTAYC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	563
Bbv12I	GWGCWC	1 cut(s)	563
BbvI	GCAGC	2 cut(s)	850, 936
BccI	CCATC	1 cut(s)	319
BfaI	CTAG	3 cut(s)	89, 516, 735
BfoI	RGCGCY	1 cut(s)	89
BfuAI	ACCTGC	3 cut(s)	485, 683, 806
BisI	GCNGC	3 cut(s)	513, 864, 925
BlsI	GCNGC	3 cut(s)	514, 865, 926
BmsI	GCATC	2 cut(s)	345, 522
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
Bse1I	ACTGG	2 cut(s)	240, 271
Bse3DI	GCAATG	3 cut(s)	28, 54, 671
BseGI	GGATG	2 cut(s)	244, 598
BseMI	GCAATG	3 cut(s)	28, 54, 671
BseNI	ACTGG	2 cut(s)	240, 271
BseXI	GCAGC	2 cut(s)	850, 936
BsgI	GTGCAG	1 cut(s)	786
BsiHKAI	GWGCWC	1 cut(s)	563
BsiSI	CCGG	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	840
Bsp1286I	GDGCHC	1 cut(s)	563
Bsp1407I	TGTACA	1 cut(s)	786
Bsp143I	GATC	3 cut(s)	286, 333, 717
BspACI	CCGC	3 cut(s)	230, 513, 876
BspHI	TCATGA	1 cut(s)	525
BspMI	ACCTGC	3 cut(s)	485, 683, 806
BspPI	GGATC	3 cut(s)	281, 341, 712
BsrDI	GCAATG	3 cut(s)	28, 54, 671
BsrGI	TGTACA	1 cut(s)	786
BsrI	ACTGG	2 cut(s)	240, 271
BssMI	GATC	3 cut(s)	286, 333, 717
Bst6I	CTCTTC	1 cut(s)	830
BstAUI	TGTACA	1 cut(s)	786
BstC8I	GCNNGC	2 cut(s)	678, 929
BstDEI	CTNAG	2 cut(s)	9, 945
BstF5I	GGATG	2 cut(s)	244, 598
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	2 cut(s)	88, 385
BstKTI	GATC	3 cut(s)	289, 336, 720
BstMBI	GATC	3 cut(s)	286, 333, 717
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 677
BstNSI	RCATGY	2 cut(s)	684, 931
BstV1I	GCAGC	2 cut(s)	850, 936
BstX2I	RGATCY	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	717
BtsCI	GGATG	2 cut(s)	244, 598
BtsIMutI	CAGTG	1 cut(s)	660
BveI	ACCTGC	3 cut(s)	485, 683, 806
Cac8I	GCNNGC	2 cut(s)	678, 929
CaiI	CAGNNNCTG	1 cut(s)	500
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	2 cut(s)	88, 385
Csp6I	GTAC	2 cut(s)	732, 787
CviAII	CATG	7 cut(s)	110, 128, 419, 526, 681, 790, 928
CviJI	RGCY	6 cut(s)	34, 115, 206, 561, 767, 863
CviKI_1	RGCY	6 cut(s)	34, 115, 206, 561, 767, 863
CviQI	GTAC	2 cut(s)	732, 787
DdeI	CTNAG	2 cut(s)	9, 945
DpnI	GATC	3 cut(s)	288, 335, 719
DpnII	GATC	3 cut(s)	286, 333, 717
Eam1104I	CTCTTC	1 cut(s)	830
EarI	CTCTTC	1 cut(s)	830
Ecl136II	GAGCTC	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	563
Eco32I	GATATC	1 cut(s)	757
Eco53kI	GAGCTC	1 cut(s)	561
Eco57I	CTGAAG	2 cut(s)	83, 312
EcoICRI	GAGCTC	1 cut(s)	561
EcoRV	GATATC	1 cut(s)	757
EcoT38I	GRGCYC	1 cut(s)	563
FaeI	CATG	7 cut(s)	113, 131, 422, 529, 684, 793, 931
FatI	CATG	7 cut(s)	109, 127, 418, 525, 680, 789, 927
FauI	CCCGC	1 cut(s)	869
Fnu4HI	GCNGC	3 cut(s)	513, 864, 925
FokI	GGATG	2 cut(s)	251, 605
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	3 cut(s)	513, 864, 925
FspBI	CTAG	3 cut(s)	89, 516, 735
FspI	TGCGCA	1 cut(s)	384
GlaI	GCGC	2 cut(s)	87, 384
GluI	GCNGC	3 cut(s)	513, 864, 925
HaeII	RGCGCY	1 cut(s)	89
HapII	CCGG	1 cut(s)	536
HhaI	GCGC	2 cut(s)	88, 385
Hin1II	CATG	7 cut(s)	113, 131, 422, 529, 684, 793, 931
Hin6I	GCGC	2 cut(s)	86, 383
HinP1I	GCGC	2 cut(s)	86, 383
HinfI	GANTC	5 cut(s)	11, 441, 446, 639, 658
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	2 cut(s)	37, 296
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	2 cut(s)	63, 451
Hpy188III	TCNNGA	5 cut(s)	15, 290, 315, 344, 526
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	3 cut(s)	58, 127, 701
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	6 cut(s)	418, 488, 671, 676, 686, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 677
HpyF3I	CTNAG	2 cut(s)	9, 945
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	7 cut(s)	113, 131, 422, 529, 684, 793, 931
HspAI	GCGC	2 cut(s)	86, 383
Kzo9I	GATC	3 cut(s)	286, 333, 717
LmnI	GCTCC	2 cut(s)	558, 566
Lsp1109I	GCAGC	2 cut(s)	850, 936
LweI	GCATC	2 cut(s)	345, 522
MaeI	CTAG	3 cut(s)	89, 516, 735
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	4 cut(s)	262, 575, 595, 655
MalI	GATC	3 cut(s)	288, 335, 719
MboI	GATC	3 cut(s)	286, 333, 717
MboII	GAAGA	7 cut(s)	133, 301, 305, 541, 716, 727, 817
MfeI	CAATTG	1 cut(s)	909
MflI	RGATCY	1 cut(s)	717
MhlI	GDGCHC	1 cut(s)	563
MluCI	AATT	9 cut(s)	40, 173, 318, 394, 402, 567, 649, 697, 909
MlyI	GAGTC	3 cut(s)	20, 440, 652
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	3 cut(s)	11, 69, 196
MroXI	GAANNNNTTC	2 cut(s)	440, 743
MseI	TTAA	5 cut(s)	80, 171, 339, 608, 872
MslI	CAYNNNNRTG	1 cut(s)	530
MspI	CCGG	1 cut(s)	536
MunI	CAATTG	1 cut(s)	909
Mva1269I	GAATGC	1 cut(s)	840
MwoI	GCNNNNNNNGC	2 cut(s)	65, 677
NdeII	GATC	3 cut(s)	286, 333, 717
NlaIII	CATG	7 cut(s)	113, 131, 422, 529, 684, 793, 931
NmuCI	GTSAC	1 cut(s)	655
NsbI	TGCGCA	1 cut(s)	384
NspI	RCATGY	2 cut(s)	684, 931
PaeI	GCATGC	1 cut(s)	931
PagI	TCATGA	1 cut(s)	525
PaqCI	CACCTGC	1 cut(s)	806
PctI	GAATGC	1 cut(s)	840
PdmI	GAANNNNTTC	2 cut(s)	440, 743
PfeI	GAWTC	2 cut(s)	441, 639
PkrI	GCNGC	3 cut(s)	514, 865, 926
PleI	GAGTC	3 cut(s)	19, 440, 652
PpsI	GAGTC	3 cut(s)	19, 440, 652
PshBI	ATTAAT	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	563
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	717
RsaI	GTAC	2 cut(s)	733, 788
RsaNI	GTAC	2 cut(s)	732, 787
RseI	CAYNNNNRTG	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	563
SaqAI	TTAA	5 cut(s)	80, 171, 339, 608, 872
SatI	GCNGC	3 cut(s)	513, 864, 925
Sau3AI	GATC	3 cut(s)	286, 333, 717
SchI	GAGTC	3 cut(s)	20, 440, 652
SduI	GDGCHC	1 cut(s)	563
SfaNI	GCATC	2 cut(s)	345, 522
SmiMI	CAYNNNNRTG	1 cut(s)	530
SphI	GCATGC	1 cut(s)	931
Sse9I	AATT	9 cut(s)	40, 173, 318, 394, 402, 567, 649, 697, 909
SsiI	CCGC	3 cut(s)	230, 513, 876
SspMI	CTAG	3 cut(s)	89, 516, 735
SstI	GAGCTC	1 cut(s)	563
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	3 cut(s)	444, 642, 747
TaqII	GACCGA	1 cut(s)	363
TasI	AATT	9 cut(s)	40, 173, 318, 394, 402, 567, 649, 697, 909
TatI	WGTACW	1 cut(s)	786
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	2 cut(s)	441, 639
Tru1I	TTAA	5 cut(s)	80, 171, 339, 608, 872
Tru9I	TTAA	5 cut(s)	80, 171, 339, 608, 872
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	2 cut(s)	863, 924
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	6 cut(s)	42, 514, 542, 561, 572, 806
TspGWI	ACGGA	2 cut(s)	453, 906
TspRI	CASTG	1 cut(s)	660
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	1 cut(s)	394
XceI	RCATGY	2 cut(s)	684, 931
XmnI	GAANNNNTTC	2 cut(s)	440, 743
XspI	CTAG	3 cut(s)	89, 516, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.