Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008082

Physical Location & Seq

Genomic Coordinates Forward (+)

19705607 .. 19705867

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTTTACCGGATATGAGCAGAATGGTGATCCTGATGAAGCATTGGAGTTTTTCTCCAAGATGGTAATGGTGGGGCACGTTAATCATGTCCGAGTGACGCTTGTTGGTGTTGTTTCAGCTTGTGCTCAGAATGGGTTCCTCGTTGATTTATCTTTAGGTAACGCGGTTGCTAAAATTCTATGCAAAGATGGGTTCTGTCAAAACTGCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

71

Amino Acids

7.6

Weight (kDa)

5.42

Isoelectric Point (pI)

7.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01580
fragaria_vesca	FvH4_6g51580 FvH4_6g51620
malus_domestica	MD07G1177500.v1.1 MD17G1023700.v1.1 MD17G1024400.v1.1 MD17G1024800.v1.1 MD17G1025100.v1.1 MD17G1025800.v1.1 MD17G1026000.v1.1
prunus_persica	Prupe.3G292700_v2.0.a1
pyrus_communis	pycom07g17150 pycom17g02080 pycom17g02110
rosa_laevigata	RLG00000022166
rosa_multiflora	Rmu_sc0000860.1_g000001 Rmu_sc0016793.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079160
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646100 Rh2BG656800 Rh2CG621900 Rh2DG670200
rosa_wichuraiana	Rw2G053060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	164
AciI	CCGC	2 cut(s)	164, 208
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	174
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
Alw21I	GWGCWC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	127
BccI	CCATC	2 cut(s)	55, 182
BfaI	CTAG	1 cut(s)	211
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	137
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BsaWI	WCCGGW	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	78, 127
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	2 cut(s)	164, 208
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	23
BssMI	GATC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	78
BstUI	CGCG	1 cut(s)	164
CseI	GACGC	1 cut(s)	106
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	1 cut(s)	119
CviKI_1	RGCY	1 cut(s)	119
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
FaeI	CATG	1 cut(s)	89
FaiI	YATR	3 cut(s)	15, 87, 181
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	211
GluI	GCNGC	1 cut(s)	208
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	1 cut(s)	106
Hin1II	CATG	1 cut(s)	89
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	92, 129
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	183
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	28
LpnPI	CCDG	2 cut(s)	22, 45
MaeI	CTAG	1 cut(s)	211
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	94, 158
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MhlI	GDGCHC	2 cut(s)	78, 127
MluCI	AATT	1 cut(s)	174
MnlI	CCTC	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	1 cut(s)	81
MspI	CCGG	1 cut(s)	9
MvnI	CGCG	1 cut(s)	164
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	1 cut(s)	28
SduI	GDGCHC	2 cut(s)	78, 127
SetI	ASST	3 cut(s)	81, 121, 160
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	2 cut(s)	164, 208
SspMI	CTAG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	81
TasI	AATT	1 cut(s)	174
TauI	GCSGC	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	51
XapI	RAATTY	1 cut(s)	174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.