Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008082

Physical Location & Seq

Genomic Coordinates Forward (+)

1325986 .. 1326555

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g02080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCAGGAGACCTTGTGTCTATTTCGTACATGATGTCTGAGTCAAGAGGTAACGATGAAAAGCCTGATAATTTCACCATTCCCATTGCTCTGAAGGCGTGTGCGAGGTTAAGGGCGCTGTCGTGTGGAAAAATAATACATGGATTTGTAAAGAAACATGAGGGGGTAGCATTGGATATGTTTGTGGGTTCTGCGTTGATTGAATTGTATTCCAAATGCGGAGAAATGGGCGAAGCTGTGATAGTGTTTGACGAGTTTTCGCAACCGGATGTGTTTTTGTGGACTTCTATGGTTACTGGATATGAGCAGAATGGTGATCCTGAACAAGCATTGGAGTTTCTCTCCCGAATGGTGATGGTGGGGCGCATTAATCCTGACCGAGTGACGCTTGTTAGTGCTGTTTCGGCTTGTGCTCAGTTATCAAATTTTAGAATTGGAAGTTGTGTGCATGGTGTTTCTATTAGGAACGGGTTCAACTCTAATTTATCTTTAGGTAATGCATTGCTAAATCTATATGCAGAGACAGGTTCAAAACTGCCGCTAGGTATGTGGTTTCTTGGAGCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

190

Amino Acids

20.49

Weight (kDa)

5.36

Isoelectric Point (pI)

25.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	89 - 138	3.5e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01580
fragaria_vesca	FvH4_6g51580 FvH4_6g51620
malus_domestica	MD07G1177500.v1.1 MD17G1023700.v1.1 MD17G1024400.v1.1 MD17G1024800.v1.1 MD17G1025100.v1.1 MD17G1025800.v1.1 MD17G1026000.v1.1
prunus_persica	Prupe.3G292700_v2.0.a1
pyrus_communis	pycom07g17150 pycom17g02080 pycom17g02110
rosa_laevigata	RLG00000022166
rosa_multiflora	Rmu_sc0000860.1_g000001 Rmu_sc0016793.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079160
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646100 Rh2BG656800 Rh2CG621900 Rh2DG670200
rosa_wichuraiana	Rw2G053060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	219, 539
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	203, 475, 531
AhdI	GACNNNNNGTC	1 cut(s)	16
AluBI	AGCT	2 cut(s)	236, 563
AluI	AGCT	2 cut(s)	236, 563
Alw21I	GWGCWC	2 cut(s)	415, 565
Alw26I	GTCTC	2 cut(s)	3, 515
AlwI	GGATC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	424
AseI	ATTAAT	1 cut(s)	369
Asp700I	GAANNNNTTC	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	118, 366
AsuHPI	GGTGA	3 cut(s)	67, 326, 364
BanII	GRGCYC	1 cut(s)	565
Bbv12I	GWGCWC	2 cut(s)	415, 565
BccI	CCATC	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	3, 515
BfaI	CTAG	1 cut(s)	542
BfoI	RGCGCY	1 cut(s)	119
BisI	GCNGC	1 cut(s)	539
BlsI	GCNGC	1 cut(s)	540
BmeRI	GACNNNNNGTC	1 cut(s)	16
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
BsaI	GGTCTC	1 cut(s)	3
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	2 cut(s)	84, 500
BseGI	GGATG	1 cut(s)	274
BseMI	GCAATG	2 cut(s)	84, 500
BseMII	CTCAG	2 cut(s)	30, 428
BseNI	ACTGG	1 cut(s)	301
BsiHKAI	GWGCWC	2 cut(s)	415, 565
BsiSI	CCGG	1 cut(s)	266
BsmAI	GTCTC	2 cut(s)	3, 515
Bso31I	GGTCTC	1 cut(s)	3
Bsp1286I	GDGCHC	2 cut(s)	415, 565
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	2 cut(s)	219, 539
BspCNI	CTCAG	2 cut(s)	31, 427
BspPI	GGATC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	3
BsrDI	GCAATG	2 cut(s)	84, 500
BsrI	ACTGG	1 cut(s)	301
BssMI	GATC	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	39, 414
BstF5I	GGATG	1 cut(s)	274
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	2 cut(s)	118, 366
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	2 cut(s)	3, 515
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 404
BtsCI	GGATG	1 cut(s)	274
CfoI	GCGC	2 cut(s)	118, 366
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	5 cut(s)	31, 140, 158, 449, 567
CviJI	RGCY	4 cut(s)	64, 236, 407, 563
CviKI_1	RGCY	4 cut(s)	64, 236, 407, 563
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	39, 414
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DriI	GACNNNNNGTC	1 cut(s)	16
Eam1105I	GACNNNNNGTC	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	563
Eco24I	GRGCYC	1 cut(s)	565
Eco31I	GGTCTC	1 cut(s)	3
Eco53kI	GAGCTC	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	563
EcoT22I	ATGCAT	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	565
FaeI	CATG	5 cut(s)	34, 143, 161, 452, 570
FatI	CATG	5 cut(s)	30, 139, 157, 448, 566
Fnu4HI	GCNGC	1 cut(s)	539
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	1 cut(s)	539
FspBI	CTAG	1 cut(s)	542
GlaI	GCGC	2 cut(s)	117, 365
GluI	GCNGC	1 cut(s)	539
HaeII	RGCGCY	1 cut(s)	119
HapII	CCGG	1 cut(s)	266
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	2 cut(s)	118, 366
Hin1II	CATG	5 cut(s)	34, 143, 161, 452, 570
Hin6I	GCGC	2 cut(s)	116, 364
HinP1I	GCGC	2 cut(s)	116, 364
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	3 cut(s)	67, 326, 364
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	2 cut(s)	40, 93
Hpy188III	TCNNGA	4 cut(s)	45, 320, 345, 374
Hpy8I	GTNNAC	1 cut(s)	282
HpyAV	CCTTC	1 cut(s)	88
HpyCH4V	TGCA	3 cut(s)	448, 500, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 404
HpyF3I	CTNAG	2 cut(s)	39, 414
Hsp92II	CATG	5 cut(s)	34, 143, 161, 452, 570
HspAI	GCGC	2 cut(s)	116, 364
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	2 cut(s)	560, 568
LpnPI	CCDG	6 cut(s)	78, 279, 282, 333, 387, 510
MaeI	CTAG	1 cut(s)	542
MaeIII	GTNAC	3 cut(s)	50, 292, 382
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MhlI	GDGCHC	2 cut(s)	415, 565
MluCI	AATT	5 cut(s)	70, 203, 424, 432, 481
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	41, 99, 154
Mph1103I	ATGCAT	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	470
MseI	TTAA	2 cut(s)	110, 369
MspI	CCGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	95, 404
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	5 cut(s)	34, 143, 161, 452, 570
NmuCI	GTSAC	1 cut(s)	382
NsiI	ATGCAT	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	470
PkrI	GCNGC	1 cut(s)	540
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	565
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SacI	GAGCTC	1 cut(s)	565
SaqAI	TTAA	2 cut(s)	110, 369
SatI	GCNGC	1 cut(s)	539
Sau3AI	GATC	1 cut(s)	316
SchI	GAGTC	1 cut(s)	50
SduI	GDGCHC	2 cut(s)	415, 565
SetI	ASST	8 cut(s)	15, 52, 110, 238, 496, 529, 547, 565
Sse9I	AATT	5 cut(s)	70, 203, 424, 432, 481
SsiI	CCGC	2 cut(s)	219, 539
SspMI	CTAG	1 cut(s)	542
SstI	GAGCTC	1 cut(s)	565
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	5 cut(s)	70, 203, 424, 432, 481
TauI	GCSGC	1 cut(s)	541
Tru1I	TTAA	2 cut(s)	110, 369
Tru9I	TTAA	2 cut(s)	110, 369
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	72
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	470
XspI	CTAG	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.