Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008082

Physical Location & Seq

Genomic Coordinates Forward (+)

1880564 .. 1882690

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1026000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2127 bp

ATGAAAAGGAGGGAAGTCCTTGCTAATCTGCTTGCATCATGTAACAGCGCGAAATCAGTGGCGCAATTGCACTCTCAAACCCTCAAAGCCGGCCTTTCCCAGGACAGCTTCTTTGCCACAAAACTCAACGCTCTGTACGCAAAATATGAGTCCCTCGGTCATGCCCGCAAGGTGTTCGACGAAACGCTCCACAGAACTGTCTATCTCTGGAATGCCATGCTCAGGAGCTACTGTAGAGAGGACCGATGGGAGGAGACCTTGTGTCTATTTCGTAGCATGATGTCTGAGTCAAGAGGTAATGATGAAAAGCCTGATAATTTCACCATTCCCATTGCTCTGAAGGCGTGTGCGAGGTTAAGGGCGCTAGCGTGTGGAAAAATAATACATGGGTTTGTGAAGAAACATGAGAAGGTTGCATTGGATATGTTTGTAGGTTCTGCATTGATTGAATTGTATTCCAAATGCGGACAAATGGGCGAGGCTGTGAAAGTGTTTGACGAGTTTTTGCACCCGGATGTGTTTTTGTGGACTTCTATGGTTACTGGATATGAGCAGAATGGTGATCCTGAAGAAGCATTGGAGTTTTTCTCCCGAATGGTAATGGTGGGGTGCATTAATCCTGACCAAGTGACGCTTGTTAGTGCTGTTTCGGCTTGTGCTCAGTTATCAAATTTTAGAATTGGAAGTTGTGTGCATGGTGTTTCTATTAGGAACGGGTTCAACTCTGATTTATCTTTAGGTAATGCATTGCTAAATCTCTATGCAAAGACGGGTTCTGTCAAAACTGCCGCTAGGTTGTTCATGAAGATGCTGGAAAAAGATGTGGTTTCTTGGAGCTCCATGATTGCCTGTTACACTCATAATGGGGATGTAACAGAAGCGTTAAATCTTTTCAACAAAATGATTGATACGAGAATCGAACCTAATTCAGTGACTCTGGTAAGTGCATTACAAGCATGTGCATTGGCAGGTAATTTAGAAGAAGGTAAGAAGATCCACAAAATTGCTACTAGGAAGTGTTTTGAGTTAGATATCAAGGTAGCTACAGCCTTGATTGATATGTACATGAAGTGCTCTGCACCCGAAAAAGCAGGTGATCTCTTCAATAGAATGCCAGAGAAAGATGTGGTTTCGTGGGCTGCCTTGTTGAGCGGGTACGCTCATAACGGAATGGCATACAAGTCAATTGGGGTCTTTCGCGACATGCTATCAGACGAAACTAAGCCTGATGCCGTTGCTATGGTCAAGCTTCTTGCAGCTTGTTCGGAATTAGGGATTCTTCAACAAGCTCTCTGCCTCCATGCTTATGTGATTAAACGTGCCTTCAAGAATAACATCTTTGTTGGAGCTTCACTCATAGAGTTATACTCGAAATGCGGCAGCATAGACAATGCTGTCCTATTATTTGAAGGGATAACAGACAAAGATGTCGTTATCTGGAGCGCGATGATTGCAGGTTATGGAGTTCATGGACAAGGAGAAGAAGCTTTAAAGGTATTTGATCGGATGGTGAAGCACTCAGATGTCAAGCCTAATGATGTAACATTTCTCTCGATTTTATCTGCGTGTAGCCATTCGGGTTTGGTTGAAGAAGGCATTGAGATATTCAACACCATGTTGCCTGAATACCAACTTAAGCCCAGACCTGAGCACTACGGGATAATTGTTGATCTTCTTGGCCGGACAGGAGAGCTGGACAAGGCAATGGAAATCGTTGAGACAATGCCCAATCCAACTGCACCTCATGTTTGGGGAGCCTTTCTTGGTGCATGCCGGATTCATAACAACACAAAACTTGGAGAGGTTGCAGCAAAGAGTCTTTTTCGGTTGGATCCTAATCATGCAGGATATTACATCCTGCTCTCGAATATATATGCCATGGATAACAAATGGGAAAATGTGACAAATCTTAGAACTTTGATAAAGGAGAAGGGGTTAAAGAAGGTGTCCGGGCAGAGCATTGTCGAGGTGGGGAATGACATATGTAGTTTTGTTGCCGGAGATAGATTGCACCTTGATTCCGATCAGATTTATGGAGTGCTAGGAAAATTAGAGGTGAAAATGAGAGAGGAAGGTTATGTTCCCAATGTCGATCTCCTGCTACAAAACATGGCGGATGCTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

709

Amino Acids

78.41

Weight (kDa)

6.37

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	66 - 118	1e-06	PPR repeat family
PPR_2	PF13041	171 - 220	4.3e-07	PPR repeat family
PPR	PF01535	175 - 204	4.8e-07	PPR repeat
PPR_2	PF13041	273 - 321	7.7e-11	PPR repeat family
PPR	PF01535	276 - 303	4.6e-07	PPR repeat
PPR_2	PF13041	475 - 524	8.3e-11	PPR repeat family
PPR	PF01535	478 - 506	1.7e-07	PPR repeat
E_motif	PF20431	594 - 656	1.3e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01580
fragaria_vesca	FvH4_6g51580 FvH4_6g51620
malus_domestica	MD07G1177500.v1.1 MD17G1023700.v1.1 MD17G1024400.v1.1 MD17G1024800.v1.1 MD17G1025100.v1.1 MD17G1025800.v1.1 MD17G1026000.v1.1
prunus_persica	Prupe.3G292700_v2.0.a1
pyrus_communis	pycom07g17150 pycom17g02080 pycom17g02110
rosa_laevigata	RLG00000022166
rosa_multiflora	Rmu_sc0000860.1_g000001 Rmu_sc0016793.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079160
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646100 Rh2BG656800 Rh2CG621900 Rh2DG670200
rosa_wichuraiana	Rw2G053060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1082
AasI	GACNNNNNNGTC	2 cut(s)	1394, 1427
Acc36I	ACCTGC	3 cut(s)	959, 1082, 1445
AccBSI	CCGCTC	1 cut(s)	1152
AccII	CGCG	3 cut(s)	50, 1200, 1445
AciI	CCGC	6 cut(s)	166, 465, 789, 1152, 1377, 2114
AclWI	GGATC	4 cut(s)	557, 988, 1826, 1839
AcoI	YGGCCR	1 cut(s)	1678
AcsI	RAATTY	1 cut(s)	670
AcuI	CTGAAG	2 cut(s)	359, 588
AfaI	GTAC	3 cut(s)	137, 1064, 1157
AfiI	CCNNNNNNNGG	3 cut(s)	100, 222, 250
AflII	CTTAAG	1 cut(s)	1634
AgsI	TTSAA	9 cut(s)	449, 721, 895, 1105, 1283, 1327, 1409, 1589, 1609
AhdI	GACNNNNNGTC	1 cut(s)	261
AjnI	CCWGG	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
Alw21I	GWGCWC	4 cut(s)	661, 839, 1076, 1653
Alw26I	GTCTC	2 cut(s)	248, 1712
AlwI	GGATC	4 cut(s)	557, 988, 1826, 1839
AoxI	GGCC	2 cut(s)	91, 1678
ApeKI	GCWGC	4 cut(s)	1139, 1256, 1380, 1808
ApoI	RAATTY	1 cut(s)	670
ArsI	GACNNNNNNTTYG	4 cut(s)	95, 127, 134, 166
AseI	ATTAAT	1 cut(s)	615
Asp700I	GAANNNNTTC	1 cut(s)	716
AspLEI	GCGC	4 cut(s)	50, 64, 364, 1445
AspS9I	GGNCC	1 cut(s)	241
AsuC2I	CCSGG	2 cut(s)	512, 1951
AsuHPI	GGTGA	5 cut(s)	313, 572, 1106, 1522, 2068
AsuNHI	GCTAGC	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	241
BamHI	GGATCC	1 cut(s)	1831
BanII	GRGCYC	1 cut(s)	839
Bbv12I	GWGCWC	4 cut(s)	661, 839, 1076, 1653
BbvI	GCAGC	4 cut(s)	1126, 1268, 1392, 1820
BccI	CCATC	2 cut(s)	240, 1501
BceAI	ACGGC	1 cut(s)	1217
BcgI	CGANNNNNNTGC	4 cut(s)	157, 191, 1245, 1279
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	2 cut(s)	512, 1951
BcoDI	GTCTC	2 cut(s)	248, 1712
BfaI	CTAG	5 cut(s)	365, 792, 1011, 2042, 2125
BfmI	CTRYAG	2 cut(s)	232, 1044
BfoI	RGCGCY	1 cut(s)	365
BfrI	CTTAAG	1 cut(s)	1634
BfuAI	ACCTGC	3 cut(s)	959, 1082, 1445
BisI	GCNGC	6 cut(s)	789, 1140, 1257, 1378, 1381, 1809
BlsI	GCNGC	6 cut(s)	790, 1141, 1258, 1379, 1382, 1810
Bme1390I	CCNGG	3 cut(s)	101, 512, 1951
Bme18I	GGWCC	1 cut(s)	241
BmeRI	GACNNNNNGTC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	2 cut(s)	1756, 1833
BmrFI	CCNGG	3 cut(s)	101, 512, 1951
BmsI	GCATC	4 cut(s)	44, 798, 1219, 2107
BmtI	GCTAGC	1 cut(s)	368
BplI	GAGNNNNNCTC	6 cut(s)	572, 604, 1338, 1370, 1352, 1384
BpmI	CTGGAG	1 cut(s)	1459
Bpu10I	CCTNAGC	2 cut(s)	221, 1647
BpuMI	CCSGG	2 cut(s)	512, 1951
BsaBI	GATNNNNATC	2 cut(s)	1836, 2022
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	99, 154, 1878
BsaXI	ACNNNNNCTCC	6 cut(s)	217, 245, 247, 275, 1919, 1949
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 222, 250
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	547
Bse3DI	GCAATG	3 cut(s)	330, 746, 1710
Bse8I	GATNNNNATC	2 cut(s)	1836, 2022
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	3 cut(s)	99, 154, 1878
BseGI	GGATG	5 cut(s)	520, 874, 1512, 1854, 2122
BseJI	GATNNNNATC	2 cut(s)	1836, 2022
BseLI	CCNNNNNNNGG	3 cut(s)	100, 222, 250
BseMI	GCAATG	3 cut(s)	330, 746, 1710
BseMII	CTCAG	5 cut(s)	235, 276, 674, 1533, 1638
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	4 cut(s)	1126, 1268, 1392, 1820
BsgI	GTGCAG	2 cut(s)	1062, 1722
Bsh1236I	CGCG	3 cut(s)	50, 1200, 1445
BshFI	GGCC	2 cut(s)	93, 1680
BsiHKAI	GWGCWC	4 cut(s)	661, 839, 1076, 1653
BsiSI	CCGG	6 cut(s)	90, 512, 1681, 1774, 1950, 1998
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	3 cut(s)	100, 222, 250
BsmAI	GTCTC	2 cut(s)	248, 1712
BsmFI	GGGAC	1 cut(s)	136
BsmI	GAATGC	2 cut(s)	217, 1116
BsnI	GGCC	2 cut(s)	93, 1680
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	4 cut(s)	661, 839, 1076, 1653
Bsp1407I	TGTACA	1 cut(s)	1062
Bsp143I	GATC	8 cut(s)	562, 993, 1096, 1501, 1669, 1831, 2023, 2092
Bsp19I	CCATGG	1 cut(s)	1878
Bsp68I	TCGCGA	1 cut(s)	1200
BspACI	CCGC	6 cut(s)	166, 465, 789, 1152, 1377, 2114
BspANI	GGCC	2 cut(s)	93, 1680
BspCNI	CTCAG	5 cut(s)	234, 277, 673, 1532, 1639
BspFNI	CGCG	3 cut(s)	50, 1200, 1445
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	2 cut(s)	1756, 1833
BspMI	ACCTGC	3 cut(s)	959, 1082, 1445
BspOI	GCTAGC	1 cut(s)	368
BspPI	GGATC	4 cut(s)	557, 988, 1826, 1839
BspTI	CTTAAG	1 cut(s)	1634
BspTNI	GGTCTC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	1152
BsrDI	GCAATG	3 cut(s)	330, 746, 1710
BsrFI	RCCGGY	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	1062
BsrI	ACTGG	1 cut(s)	547
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	99, 154, 1878
BssMI	GATC	8 cut(s)	562, 993, 1096, 1501, 1669, 1831, 2023, 2092
BssT1I	CCWWGG	1 cut(s)	1878
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	199, 233
Bst6I	CTCTTC	1 cut(s)	1106
BstAFI	CTTAAG	1 cut(s)	1634
BstAUI	TGTACA	1 cut(s)	1062
BstC8I	GCNNGC	5 cut(s)	33, 91, 166, 366, 1771
BstDEI	CTNAG	7 cut(s)	221, 285, 660, 1221, 1519, 1647, 1910
BstDSI	CCRYGG	1 cut(s)	1878
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	5 cut(s)	520, 874, 1512, 1854, 2122
BstFNI	CGCG	3 cut(s)	50, 1200, 1445
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	4 cut(s)	50, 64, 364, 1445
BstKTI	GATC	8 cut(s)	565, 996, 1099, 1504, 1672, 1834, 2026, 2095
BstMAI	GTCTC	2 cut(s)	248, 1712
BstMBI	GATC	8 cut(s)	562, 993, 1096, 1501, 1669, 1831, 2023, 2092
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 341, 650, 953, 1451
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	3 cut(s)	960, 1207, 1773
BstSCI	CCNGG	3 cut(s)	99, 510, 1949
BstSFI	CTRYAG	2 cut(s)	232, 1044
BstUI	CGCG	3 cut(s)	50, 1200, 1445
BstV1I	GCAGC	4 cut(s)	1126, 1268, 1392, 1820
BstX2I	RGATCY	2 cut(s)	993, 1831
BstYI	RGATCY	2 cut(s)	993, 1831
BsuRI	GGCC	2 cut(s)	93, 1680
BtgI	CCRYGG	1 cut(s)	1878
BtgZI	GCGATG	1 cut(s)	1460
BtsCI	GGATG	5 cut(s)	520, 874, 1512, 1854, 2122
BtsIMutI	CAGTG	2 cut(s)	63, 936
BtuMI	TCGCGA	1 cut(s)	1200
BveI	ACCTGC	3 cut(s)	959, 1082, 1445
Cac8I	GCNNGC	5 cut(s)	33, 91, 166, 366, 1771
CciI	TCATGA	1 cut(s)	801
CfoI	GCGC	4 cut(s)	50, 64, 364, 1445
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	241
CseI	GACGC	1 cut(s)	640
Csp6I	GTAC	3 cut(s)	136, 1063, 1156
CviQI	GTAC	3 cut(s)	136, 1063, 1156
DdeI	CTNAG	7 cut(s)	221, 285, 660, 1221, 1519, 1647, 1910
DpnI	GATC	8 cut(s)	564, 995, 1098, 1503, 1671, 1833, 2025, 2094
DpnII	GATC	8 cut(s)	562, 993, 1096, 1501, 1669, 1831, 2023, 2092
DraI	TTTAAA	1 cut(s)	1491
DrdI	GACNNNNNNGTC	2 cut(s)	1394, 1427
DriI	GACNNNNNGTC	1 cut(s)	261
DseDI	GACNNNNNNGTC	2 cut(s)	1394, 1427
EaeI	YGGCCR	1 cut(s)	1678
Eam1104I	CTCTTC	1 cut(s)	1106
Eam1105I	GACNNNNNGTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	1106
Ecl136II	GAGCTC	1 cut(s)	837
Eco130I	CCWWGG	1 cut(s)	1878
Eco24I	GRGCYC	1 cut(s)	839
Eco31I	GGTCTC	1 cut(s)	248
Eco32I	GATATC	1 cut(s)	1033
Eco47I	GGWCC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	837
Eco57I	CTGAAG	2 cut(s)	359, 588
EcoICRI	GAGCTC	1 cut(s)	837
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	1033
EcoT14I	CCWWGG	1 cut(s)	1878
EcoT22I	ATGCAT	1 cut(s)	748
EcoT38I	GRGCYC	1 cut(s)	839
ErhI	CCWWGG	1 cut(s)	1878
FalI	AAGNNNNNCTT	4 cut(s)	78, 110, 618, 650
FaqI	GGGAC	1 cut(s)	136
FauI	CCCGC	2 cut(s)	173, 1145
FauNDI	CATATG	1 cut(s)	1982
Fnu4HI	GCNGC	6 cut(s)	789, 1140, 1257, 1378, 1381, 1809
FokI	GGATG	4 cut(s)	527, 881, 1519, 1841
FriOI	GRGCYC	1 cut(s)	839
Fsp4HI	GCNGC	6 cut(s)	789, 1140, 1257, 1378, 1381, 1809
FspBI	CTAG	5 cut(s)	365, 792, 1011, 2042, 2125
GlaI	GCGC	4 cut(s)	49, 63, 363, 1444
GluI	GCNGC	6 cut(s)	789, 1140, 1257, 1378, 1381, 1809
GsuI	CTGGAG	1 cut(s)	1459
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	93, 1680
HapII	CCGG	6 cut(s)	90, 512, 1681, 1774, 1950, 1998
HgaI	GACGC	1 cut(s)	640
HhaI	GCGC	4 cut(s)	50, 64, 364, 1445
Hin6I	GCGC	4 cut(s)	48, 62, 362, 1443
HinP1I	GCGC	4 cut(s)	48, 62, 362, 1443
HindIII	AAGCTT	2 cut(s)	1247, 1485
HinfI	GANTC	8 cut(s)	149, 287, 915, 934, 1276, 1777, 1816, 2018
HpaII	CCGG	6 cut(s)	90, 512, 1681, 1774, 1950, 1998
HphI	GGTGA	5 cut(s)	313, 572, 1106, 1522, 2068
Hpy166II	GTNNAC	1 cut(s)	528
Hpy188I	TCNGA	9 cut(s)	286, 339, 727, 1213, 1267, 1506, 1522, 2023, 2028
Hpy8I	GTNNAC	1 cut(s)	528
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	9 cut(s)	334, 403, 977, 1333, 1403, 1586, 1924, 1936, 2066
HpyCH4III	ACNGT	2 cut(s)	199, 233
HpyCH4IV	ACGT	1 cut(s)	1318
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 341, 650, 953, 1451
HpyF3I	CTNAG	7 cut(s)	221, 285, 660, 1221, 1519, 1647, 1910
HpySE526I	ACGT	1 cut(s)	1318
HspAI	GCGC	4 cut(s)	48, 62, 362, 1443
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	8 cut(s)	562, 993, 1096, 1501, 1669, 1831, 2023, 2092
LmnI	GCTCC	7 cut(s)	192, 225, 834, 842, 1346, 1440, 1754
Lsp1109I	GCAGC	4 cut(s)	1126, 1268, 1392, 1820
LweI	GCATC	4 cut(s)	44, 798, 1219, 2107
MaeI	CTAG	5 cut(s)	365, 792, 1011, 2042, 2125
MaeII	ACGT	1 cut(s)	1318
MaeIII	GTNAC	8 cut(s)	41, 538, 628, 851, 871, 931, 1540, 1900
MalI	GATC	8 cut(s)	564, 995, 1098, 1503, 1671, 1833, 2025, 2094
MbiI	CCGCTC	1 cut(s)	1152
MboI	GATC	8 cut(s)	562, 993, 1096, 1501, 1669, 1831, 2023, 2092
MfeI	CAATTG	2 cut(s)	65, 1185
MflI	RGATCY	2 cut(s)	993, 1831
MhlI	GDGCHC	4 cut(s)	661, 839, 1076, 1653
MlyI	GAGTC	4 cut(s)	158, 296, 928, 1825
MmeI	TCCRAC	3 cut(s)	1324, 1757, 1809
Mph1103I	ATGCAT	1 cut(s)	748
MroNI	GCCGGC	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	716
MseI	TTAA	7 cut(s)	356, 615, 884, 1314, 1490, 1635, 1937
MslI	CAYNNNNRTG	4 cut(s)	513, 806, 1305, 1521
MspCI	CTTAAG	1 cut(s)	1634
MspI	CCGG	6 cut(s)	90, 512, 1681, 1774, 1950, 1998
MspR9I	CCNGG	3 cut(s)	101, 512, 1951
MunI	CAATTG	2 cut(s)	65, 1185
Mva1269I	GAATGC	2 cut(s)	217, 1116
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	3 cut(s)	50, 1200, 1445
MwoI	GCNNNNNNNGC	5 cut(s)	137, 341, 650, 953, 1451
NaeI	GCCGGC	1 cut(s)	91
NciI	CCSGG	2 cut(s)	512, 1951
NcoI	CCATGG	1 cut(s)	1878
NdeI	CATATG	1 cut(s)	1982
NdeII	GATC	8 cut(s)	562, 993, 1096, 1501, 1669, 1831, 2023, 2092
NgoMIV	GCCGGC	1 cut(s)	89
NheI	GCTAGC	1 cut(s)	364
NlaIV	GGNNCC	2 cut(s)	1756, 1833
NmuCI	GTSAC	3 cut(s)	628, 931, 1900
NruI	TCGCGA	1 cut(s)	1200
NsiI	ATGCAT	1 cut(s)	748
NspI	RCATGY	3 cut(s)	960, 1207, 1773
PaeI	GCATGC	1 cut(s)	1773
PagI	TCATGA	1 cut(s)	801
PaqCI	CACCTGC	1 cut(s)	1082
PctI	GAATGC	2 cut(s)	217, 1116
PdiI	GCCGGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	716
PfeI	GAWTC	4 cut(s)	915, 1276, 1777, 2018
PkrI	GCNGC	6 cut(s)	790, 1141, 1258, 1379, 1382, 1810
PleI	GAGTC	4 cut(s)	157, 295, 928, 1824
PpsI	GAGTC	4 cut(s)	157, 295, 928, 1824
PshBI	ATTAAT	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	839
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	1756, 1833
PspPI	GGNCC	1 cut(s)	241
PsuI	RGATCY	2 cut(s)	993, 1831
RruI	TCGCGA	1 cut(s)	1200
RsaI	GTAC	3 cut(s)	137, 1064, 1157
RsaNI	GTAC	3 cut(s)	136, 1063, 1156
RseI	CAYNNNNRTG	4 cut(s)	513, 806, 1305, 1521
SacI	GAGCTC	1 cut(s)	839
SaqAI	TTAA	7 cut(s)	356, 615, 884, 1314, 1490, 1635, 1937
SatI	GCNGC	6 cut(s)	789, 1140, 1257, 1378, 1381, 1809
Sau3AI	GATC	8 cut(s)	562, 993, 1096, 1501, 1669, 1831, 2023, 2092
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	4 cut(s)	158, 296, 928, 1825
ScrFI	CCNGG	3 cut(s)	101, 512, 1951
SduI	GDGCHC	4 cut(s)	661, 839, 1076, 1653
SfaNI	GCATC	4 cut(s)	44, 798, 1219, 2107
SfcI	CTRYAG	2 cut(s)	232, 1044
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	4 cut(s)	513, 806, 1305, 1521
SmlI	CTYRAG	1 cut(s)	1634
SmoI	CTYRAG	1 cut(s)	1634
SphI	GCATGC	1 cut(s)	1773
SsiI	CCGC	6 cut(s)	166, 465, 789, 1152, 1377, 2114
SspMI	CTAG	5 cut(s)	365, 792, 1011, 2042, 2125
SstI	GAGCTC	1 cut(s)	839
StyD4I	CCNGG	3 cut(s)	99, 510, 1949
StyI	CCWWGG	1 cut(s)	1878
TaaI	ACNGT	2 cut(s)	199, 233
TaiI	ACGT	1 cut(s)	1321
TaqI	TCGA	7 cut(s)	177, 918, 1370, 1553, 1865, 1965, 2091
TaqII	GACCGA	2 cut(s)	146, 258
TatI	WGTACW	1 cut(s)	1062
TauI	GCSGC	2 cut(s)	791, 1380
TfiI	GAWTC	4 cut(s)	915, 1276, 1777, 2018
Tru1I	TTAA	7 cut(s)	356, 615, 884, 1314, 1490, 1635, 1937
Tru9I	TTAA	7 cut(s)	356, 615, 884, 1314, 1490, 1635, 1937
TscAI	CASTG	2 cut(s)	63, 936
TseFI	GTSAC	3 cut(s)	628, 931, 1900
TseI	GCWGC	4 cut(s)	1139, 1256, 1380, 1808
Tsp45I	GTSAC	3 cut(s)	628, 931, 1900
TspDTI	ATGAA	7 cut(s)	17, 318, 790, 818, 1082, 1457, 1769
TspGWI	ACGGA	1 cut(s)	1182
TspRI	CASTG	2 cut(s)	63, 936
Vha464I	CTTAAG	1 cut(s)	1634
VpaK11BI	GGWCC	1 cut(s)	241
VspI	ATTAAT	1 cut(s)	615
XagI	CCTNNNNNAGG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	670
XceI	RCATGY	3 cut(s)	960, 1207, 1773
XmnI	GAANNNNTTC	1 cut(s)	716
XspI	CTAG	5 cut(s)	365, 792, 1011, 2042, 2125
Zsp2I	ATGCAT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.