Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011896

Physical Location & Seq

Genomic Coordinates Forward (+)

26202763 .. 26205430

Gene Structure 2668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G293000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAATGATAAGGAATCAAGCAAAAAGCGGAAAAGGGCGAGGCGTCGCGACAGAGCTCAAAATGAAAAGCTTAAGCTTTCTAGCGAAAAGGAAAGTGCTTCCGCCGCAGAAAGAATCGATGAAGACGAAGAAGAAAGTACAAAAACTTCTGCTTCTGCTAAGCGCATAAAATCGCAGGGACAGCTCTCAAATTCCTCTAGCTTTCTCGCTAAGATGAAAGCGAAGCTGTCAGGAGGGCATTTCAGGATGATCAACGAGAAGCTCTACACTTGCACTGGAAAAGAGGCGCTTGAGTATTTCAATGACGATCCAACATTGTTTGATACATACCATTCAGGATATCAAGAGCAAATGTCACATTGGCCTGAGCTTCCAGTTAATATAATCATAAAATGGCTAAAAGATCACAGTCCTTCTCTGGTCGTGGCTGATTTTGGATGTGGGGATGCACGCCTTGCAAAAAATGTGAAGAATAAAGTCTTCTCCTTTGATCTCATCTCCAAGGATCCTTCAGTAATTTCCTGTGACATGTCAAATACTCCGCTTGGCTCTTCATCTGTAGATGTTGCTGTCTTCTGCCTTTCATTGATGGGGACTAATTTCCCAAGTTACCTCCGTGAAGCGCACAGAATTCTTAAGCCAAGTGGTTGGCTTTTGATAGCAGAAGTGAAGAGCAGATTTGATTCAACAACTGGAGGAGCTGACCCAAAGACATTTACAAAAGCCGTCTGTGATCTAGGATTTACCTCTGTGTCAAAGGATTTCTCAAACAAGATGTTTATATTGTTTTACTTCAAGAAAAAGGAGGAGCAAAGTTCAAAGAAAAAGGAGGTTGAGTGGCCTGAGCTGAAACCTTGTTTATATAAGCGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000785 GO:0000792 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016740 GO:0016741 GO:0017053 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0033553 GO:0035064 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0090568 GO:0140030 GO:0140034 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_8

Protein Analysis

292

Amino Acids

32.99

Weight (kDa)

9.24

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40530 AT5G40530 AT5G40530 AT5G40530
fragaria_vesca	FvH4_6g51630 FvH4_6g51630 FvH4_6g51630
malus_domestica	MD17G1023500.v1.1
prunus_persica	Prupe.3G293000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0173161
rosa_laevigata	RLG00000022167
rosa_multiflora	Rmu_sc0016793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079150
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646200 Rh2BG656900 Rh2CG622000 Rh2DG670300
rosa_wichuraiana	Rw2G053070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AciI	CCGC	5 cut(s)	28, 102, 105, 542, 871
AclWI	GGATC	3 cut(s)	302, 500, 513
AcsI	RAATTY	2 cut(s)	190, 630
AcuI	CTGAAG	1 cut(s)	495
AcyI	GRCGYC	1 cut(s)	43
AfaI	GTAC	1 cut(s)	139
AflII	CTTAAG	2 cut(s)	71, 635
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	4 cut(s)	301, 687, 796, 819
Alw21I	GWGCWC	1 cut(s)	58
AlwI	GGATC	3 cut(s)	302, 500, 513
AoxI	GGCC	2 cut(s)	362, 839
ApoI	RAATTY	2 cut(s)	190, 630
AspLEI	GCGC	4 cut(s)	165, 289, 625, 870
BamHI	GGATCC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	58
BarI	GAAGNNNNNNTAC	2 cut(s)	130, 162
BbsI	GAAGAC	3 cut(s)	129, 472, 565
Bbv12I	GWGCWC	1 cut(s)	58
BccI	CCATC	1 cut(s)	583
BceAI	ACGGC	1 cut(s)	710
BclI	TGATCA	1 cut(s)	249
BfaI	CTAG	3 cut(s)	81, 198, 737
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	2 cut(s)	290, 871
BfrI	CTTAAG	2 cut(s)	71, 635
BisI	GCNGC	2 cut(s)	105, 871
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	2 cut(s)	106, 872
BmiI	GGNNCC	1 cut(s)	507
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	3 cut(s)	129, 472, 565
BpmI	CTGGAG	1 cut(s)	714
Bpu10I	CCTNAGC	2 cut(s)	366, 843
Bpu1102I	GCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	821, 851
Bse1I	ACTGG	3 cut(s)	280, 374, 697
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	3 cut(s)	252, 443, 451
BseMII	CTCAG	2 cut(s)	357, 834
BseNI	ACTGG	3 cut(s)	280, 374, 697
BseRI	GAGGAG	2 cut(s)	711, 821
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	364, 841
BshVI	ATCGAT	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	58
BslFI	GGGAC	2 cut(s)	192, 607
BsmFI	GGGAC	2 cut(s)	192, 607
BsnI	GGCC	2 cut(s)	364, 841
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	6 cut(s)	249, 307, 403, 490, 505, 733
Bsp1720I	GCTNAGC	1 cut(s)	159
Bsp68I	TCGCGA	1 cut(s)	48
BspACI	CCGC	5 cut(s)	28, 102, 105, 542, 871
BspANI	GGCC	2 cut(s)	364, 841
BspCNI	CTCAG	2 cut(s)	358, 835
BspDI	ATCGAT	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	507
BspPI	GGATC	3 cut(s)	302, 500, 513
BspQI	GCTCTTC	2 cut(s)	556, 665
BspTI	CTTAAG	2 cut(s)	71, 635
BsrI	ACTGG	3 cut(s)	280, 374, 697
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	6 cut(s)	249, 307, 403, 490, 505, 733
BssNI	GRCGYC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	2 cut(s)	556, 665
BstACI	GRCGYC	1 cut(s)	43
BstAFI	CTTAAG	2 cut(s)	71, 635
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	4 cut(s)	159, 210, 366, 843
BstF5I	GGATG	3 cut(s)	252, 443, 451
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	2 cut(s)	290, 871
BstHHI	GCGC	4 cut(s)	165, 289, 625, 870
BstKTI	GATC	6 cut(s)	252, 310, 406, 493, 508, 736
BstMBI	GATC	6 cut(s)	249, 307, 403, 490, 505, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 181, 455
BstNSI	RCATGY	1 cut(s)	532
BstSFI	CTRYAG	1 cut(s)	558
BstUI	CGCG	1 cut(s)	48
BstV2I	GAAGAC	3 cut(s)	129, 472, 565
BstX2I	RGATCY	1 cut(s)	505
BstXI	CCANNNNNNTGG	1 cut(s)	648
BstYI	RGATCY	1 cut(s)	505
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	364, 841
BsuTUI	ATCGAT	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	252, 443, 451
BtsIMutI	CAGTG	1 cut(s)	273
BtuMI	TCGCGA	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	451
CfoI	GCGC	4 cut(s)	165, 289, 625, 870
ClaI	ATCGAT	1 cut(s)	117
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	1 cut(s)	529
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	4 cut(s)	159, 210, 366, 843
DpnI	GATC	6 cut(s)	251, 309, 405, 492, 507, 735
DpnII	GATC	6 cut(s)	249, 307, 403, 490, 505, 733
Eam1104I	CTCTTC	2 cut(s)	556, 665
EarI	CTCTTC	2 cut(s)	556, 665
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	58
Eco32I	GATATC	1 cut(s)	341
Eco53kI	GAGCTC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	495
EcoICRI	GAGCTC	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	630
EcoRV	GATATC	1 cut(s)	341
EcoT14I	CCWWGG	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	1 cut(s)	532
FaiI	YATR	8 cut(s)	167, 328, 383, 389, 530, 782, 862, 864
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	2 cut(s)	192, 607
FatI	CATG	1 cut(s)	528
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	105, 871
FokI	GGATG	3 cut(s)	259, 450, 458
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	2 cut(s)	105, 871
FspBI	CTAG	3 cut(s)	81, 198, 737
GlaI	GCGC	4 cut(s)	164, 288, 624, 869
GluI	GCNGC	2 cut(s)	105, 871
GsuI	CTGGAG	1 cut(s)	714
HaeII	RGCGCY	2 cut(s)	290, 871
HaeIII	GGCC	2 cut(s)	364, 841
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	4 cut(s)	165, 289, 625, 870
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	1 cut(s)	532
Hin6I	GCGC	4 cut(s)	163, 287, 623, 868
HinP1I	GCGC	4 cut(s)	163, 287, 623, 868
HindIII	AAGCTT	2 cut(s)	68, 74
HinfI	GANTC	3 cut(s)	14, 114, 683
Hpy188III	TCNNGA	6 cut(s)	47, 231, 244, 336, 344, 796
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	423, 519
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	3 cut(s)	273, 449, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 181, 455
HpyF3I	CTNAG	4 cut(s)	159, 210, 366, 843
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	532
HspAI	GCGC	4 cut(s)	163, 287, 623, 868
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	6 cut(s)	249, 307, 403, 490, 505, 733
LguI	GCTCTTC	2 cut(s)	556, 665
LmnI	GCTCC	2 cut(s)	698, 808
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	3 cut(s)	81, 198, 737
MaeIII	GTNAC	3 cut(s)	354, 524, 608
MalI	GATC	6 cut(s)	251, 309, 405, 492, 507, 735
MboI	GATC	6 cut(s)	249, 307, 403, 490, 505, 733
MboII	GAAGA	8 cut(s)	134, 140, 143, 472, 481, 543, 565, 682
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	4 cut(s)	190, 516, 598, 630
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	9 cut(s)	33, 205, 227, 277, 623, 689, 757, 799, 823
MseI	TTAA	3 cut(s)	72, 378, 636
MspA1I	CMGCKG	1 cut(s)	873
MspCI	CTTAAG	2 cut(s)	71, 635
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	3 cut(s)	104, 181, 455
NdeII	GATC	6 cut(s)	249, 307, 403, 490, 505, 733
NlaIII	CATG	1 cut(s)	532
NlaIV	GGNNCC	1 cut(s)	507
NmuCI	GTSAC	2 cut(s)	354, 524
NruI	TCGCGA	1 cut(s)	48
NspI	RCATGY	1 cut(s)	532
PciI	ACATGT	1 cut(s)	528
PciSI	GCTCTTC	2 cut(s)	556, 665
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	14, 114, 683
PkrI	GCNGC	2 cut(s)	106, 872
PscI	ACATGT	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	507
PsuI	RGATCY	1 cut(s)	505
RruI	TCGCGA	1 cut(s)	48
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	58
SapI	GCTCTTC	2 cut(s)	556, 665
SaqAI	TTAA	3 cut(s)	72, 378, 636
SatI	GCNGC	2 cut(s)	105, 871
Sau3AI	GATC	6 cut(s)	249, 307, 403, 490, 505, 733
SduI	GDGCHC	1 cut(s)	58
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	558
SmlI	CTYRAG	3 cut(s)	71, 290, 635
SmoI	CTYRAG	3 cut(s)	71, 290, 635
Sse9I	AATT	4 cut(s)	190, 516, 598, 630
SsiI	CCGC	5 cut(s)	28, 102, 105, 542, 871
SspMI	CTAG	3 cut(s)	81, 198, 737
SstI	GAGCTC	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	410
TaqI	TCGA	1 cut(s)	117
TasI	AATT	4 cut(s)	190, 516, 598, 630
TatI	WGTACW	1 cut(s)	137
TauI	GCSGC	2 cut(s)	107, 873
TfiI	GAWTC	3 cut(s)	14, 114, 683
Tru1I	TTAA	3 cut(s)	72, 378, 636
Tru9I	TTAA	3 cut(s)	72, 378, 636
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	354, 524
Tsp45I	GTSAC	2 cut(s)	354, 524
TspDTI	ATGAA	6 cut(s)	17, 78, 135, 230, 543, 573
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	1 cut(s)	280
Vha464I	CTTAAG	2 cut(s)	71, 635
XapI	RAATTY	2 cut(s)	190, 630
XceI	RCATGY	1 cut(s)	532
XspI	CTAG	3 cut(s)	81, 198, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.