Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011896

Physical Location & Seq

Genomic Coordinates Forward (+)

86268084 .. 86277616

Gene Structure 9533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54040

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGATTTGCTCAATGGCTCCAGACGAGGCAATTGATAACTTGTTTGCCTTGCAAGATGAGAGAATCATCAAAGCTGTTATTAAGAAGAAGAAGAAGAAGAAGAGCGCAACAGAGAGCAGAATGGAATCAAGCAAAAAGCGAAAAGGGGCGAAGAGGCGTCGCCACACAGCTTCAAACGAAAACCCCAAACCCGAAAGAGTCAATGAAAACAAAGAAGAACAAAACCCAAAAGCTTCTAAGCGCAGAAAATCTCAGGGACCGGTCTCCAACTCCTCCAGTTTTCTCGATAAGATGAAAGCTAAGCTGTCAGGAGGGCACTTCAGAATGCTTAATGAGAAGCTCTACACTTGCACTGGGGAAGAGGCGCTTGAGTATTTCAATGACGACCCAACATTGTTTGATACATACCATGCAGGATATCAAGAGCAAATGTCGCATTGGCCTGAGCTGCCGGTGAATATAATTATAAAATGGCTAAAAGATCACAGCCCGTCTCTAGTTGTGGCTGATTTTGGATGTGGGGATGCACGCCTTGCAAAAAGTGTGAAGAACAAAGTTTTCTCCTTTGATCTCATTTCAAATGATCCTTCAGTAATTTCTTGTGATATGGCAAATACTCCCCTTTGCTCTTCATCAGTAGATGTTGCTGTATTCTGCCTGTCATTGATGGGGACTAATTTCCCAAGTTACCTTAACGAAGCACACAGAATTCTTAAGCCACGTGGCTGGCTTTTGATAGCAGAAGTGAAGAGCAGATTTGATTCCAATACTGGAGGAGCAGACCCCAAGAAGTTCACAAAAGCAGTTTGTGATTTAGGATTTACCTCTGTGGCGAAGGATTTCTCAAATAAGATGTTTATATTGTTTTACTTCAAGAAAAAGGAGGAGCAAATTTCGAAGAAAAAGGATATTGATTGGCCCGAGTTGAAACCTTGTCTGTATAAGCGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000785 GO:0000792 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016740 GO:0016741 GO:0017053 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0033553 GO:0035064 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0090568 GO:0140030 GO:0140034 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_8

Protein Analysis

317

Amino Acids

36.08

Weight (kDa)

9.43

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_8	PF05148	96 - 317	1.2e-79	Hypothetical methyltransferase
Methyltransf_11	PF08241	170 - 246	1e-05	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40530 AT5G40530 AT5G40530 AT5G40530
fragaria_vesca	FvH4_6g51630 FvH4_6g51630 FvH4_6g51630
malus_domestica	MD17G1023500.v1.1
prunus_persica	Prupe.3G293000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0173161
rosa_laevigata	RLG00000022167
rosa_multiflora	Rmu_sc0016793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079150
rosa_rugosa	Rorug02G0565900
rosa_samantha	Rh2AG646200 Rh2BG656900 Rh2CG622000 Rh2DG670300
rosa_wichuraiana	Rw2G053070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	467
AciI	CCGC	1 cut(s)	949
AclWI	GGATC	1 cut(s)	578
AcsI	RAATTY	2 cut(s)	708, 891
AcuI	CTGAAG	2 cut(s)	304, 573
AcvI	CACGTG	1 cut(s)	722
AcyI	GRCGYC	1 cut(s)	157
AflII	CTTAAG	1 cut(s)	713
AgeI	ACCGGT	1 cut(s)	259
AgsI	TTSAA	5 cut(s)	174, 379, 579, 874, 928
AluBI	AGCT	7 cut(s)	74, 170, 233, 299, 304, 340, 448
AluI	AGCT	7 cut(s)	74, 170, 233, 299, 304, 340, 448
Alw26I	GTCTC	2 cut(s)	268, 498
AlwI	GGATC	1 cut(s)	578
Ama87I	CYCGRG	1 cut(s)	920
AoxI	GGCC	2 cut(s)	440, 917
ApeKI	GCWGC	1 cut(s)	448
ApoI	RAATTY	2 cut(s)	708, 891
AsiGI	ACCGGT	1 cut(s)	259
Asp700I	GAANNNNTTC	1 cut(s)	839
AspLEI	GCGC	4 cut(s)	107, 243, 367, 948
AspS9I	GGNCC	2 cut(s)	257, 918
AsuHPI	GGTGA	1 cut(s)	466
AsuII	TTCGAA	1 cut(s)	896
AvaI	CYCGRG	1 cut(s)	920
AvaII	GGWCC	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	318
BbrPI	CACGTG	1 cut(s)	722
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	1 cut(s)	661
BcoDI	GTCTC	2 cut(s)	268, 498
BfaI	CTAG	1 cut(s)	497
BfoI	RGCGCY	2 cut(s)	368, 949
BfrI	CTTAAG	1 cut(s)	713
BisI	GCNGC	2 cut(s)	449, 949
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	2 cut(s)	450, 950
Bme18I	GGWCC	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	920
BmgT120I	GGNCC	2 cut(s)	257, 918
BmiI	GGNNCC	2 cut(s)	18, 258
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	514
BmuI	ACTGGG	1 cut(s)	363
BpmI	CTGGAG	2 cut(s)	259, 792
Bpu10I	CCTNAGC	1 cut(s)	444
Bpu1102I	GCTNAGC	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	896
BpuEI	CTTGAG	1 cut(s)	389
BsaAI	YACGTR	1 cut(s)	722
BsaHI	GRCGYC	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	259
Bse118I	RCCGGY	2 cut(s)	259, 451
Bse1I	ACTGG	3 cut(s)	276, 358, 775
BseGI	GGATG	2 cut(s)	521, 529
BseMII	CTCAG	2 cut(s)	266, 435
BseNI	ACTGG	3 cut(s)	276, 358, 775
BseRI	GAGGAG	3 cut(s)	262, 789, 899
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	435
BshFI	GGCC	2 cut(s)	442, 919
BshTI	ACCGGT	1 cut(s)	259
BsiHKCI	CYCGRG	1 cut(s)	920
BsiSI	CCGG	2 cut(s)	260, 452
BslFI	GGGAC	2 cut(s)	270, 685
BsmAI	GTCTC	2 cut(s)	268, 498
BsmBI	CGTCTC	1 cut(s)	498
BsmFI	GGGAC	2 cut(s)	270, 685
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	442, 919
Bso31I	GGTCTC	1 cut(s)	268
BsoBI	CYCGRG	1 cut(s)	920
Bsp119I	TTCGAA	1 cut(s)	896
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	481, 568, 583
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	1 cut(s)	949
BspANI	GGCC	2 cut(s)	442, 919
BspCNI	CTCAG	2 cut(s)	265, 436
BspLI	GGNNCC	2 cut(s)	18, 258
BspPI	GGATC	1 cut(s)	578
BspQI	GCTCTTC	3 cut(s)	95, 634, 743
BspT104I	TTCGAA	1 cut(s)	896
BspTI	CTTAAG	1 cut(s)	713
BspTNI	GGTCTC	1 cut(s)	268
BsrFI	RCCGGY	2 cut(s)	259, 451
BsrI	ACTGG	3 cut(s)	276, 358, 775
BssAI	RCCGGY	2 cut(s)	259, 451
BssMI	GATC	3 cut(s)	481, 568, 583
BssNI	GRCGYC	1 cut(s)	157
Bst6I	CTCTTC	5 cut(s)	95, 146, 354, 634, 743
BstACI	GRCGYC	1 cut(s)	157
BstAFI	CTTAAG	1 cut(s)	713
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstBAI	YACGTR	1 cut(s)	722
BstBI	TTCGAA	1 cut(s)	896
BstC8I	GCNNGC	2 cut(s)	529, 728
BstDEI	CTNAG	4 cut(s)	237, 252, 300, 444
BstF5I	GGATG	2 cut(s)	521, 529
BstH2I	RGCGCY	2 cut(s)	368, 949
BstHHI	GCGC	4 cut(s)	107, 243, 367, 948
BstKTI	GATC	3 cut(s)	484, 571, 586
BstMAI	GTCTC	2 cut(s)	268, 498
BstMBI	GATC	3 cut(s)	481, 568, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	433, 448, 533
BstSLI	GKGCMC	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	726
BsuRI	GGCC	2 cut(s)	442, 919
BtsCI	GGATG	2 cut(s)	521, 529
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	529, 728
CfoI	GCGC	4 cut(s)	107, 243, 367, 948
Cfr10I	RCCGGY	2 cut(s)	259, 451
Cfr13I	GGNCC	2 cut(s)	257, 918
CseI	GACGC	1 cut(s)	146
CspAI	ACCGGT	1 cut(s)	259
CviAII	CATG	1 cut(s)	410
DdeI	CTNAG	4 cut(s)	237, 252, 300, 444
DpnI	GATC	3 cut(s)	483, 570, 585
DpnII	GATC	3 cut(s)	481, 568, 583
Eam1104I	CTCTTC	5 cut(s)	95, 146, 354, 634, 743
EarI	CTCTTC	5 cut(s)	95, 146, 354, 634, 743
Eco31I	GGTCTC	1 cut(s)	268
Eco32I	GATATC	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	2 cut(s)	304, 573
Eco72I	CACGTG	1 cut(s)	722
Eco88I	CYCGRG	1 cut(s)	920
EcoRI	GAATTC	1 cut(s)	708
EcoRV	GATATC	1 cut(s)	419
Esp3I	CGTCTC	1 cut(s)	498
FaeI	CATG	1 cut(s)	413
FaiI	YATR	7 cut(s)	406, 411, 461, 467, 608, 860, 942
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	2 cut(s)	270, 685
FatI	CATG	1 cut(s)	409
Fnu4HI	GCNGC	2 cut(s)	449, 949
FokI	GGATG	2 cut(s)	528, 536
Fsp4HI	GCNGC	2 cut(s)	449, 949
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	4 cut(s)	106, 242, 366, 947
GluI	GCNGC	2 cut(s)	449, 949
GsuI	CTGGAG	2 cut(s)	259, 792
HaeII	RGCGCY	2 cut(s)	368, 949
HaeIII	GGCC	2 cut(s)	442, 919
HapII	CCGG	2 cut(s)	260, 452
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	4 cut(s)	107, 243, 367, 948
Hin1I	GRCGYC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	413
Hin6I	GCGC	4 cut(s)	105, 241, 365, 946
HinP1I	GCGC	4 cut(s)	105, 241, 365, 946
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	4 cut(s)	63, 125, 198, 761
HpaII	CCGG	2 cut(s)	260, 452
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	1 cut(s)	795
Hpy188I	TCNGA	1 cut(s)	323
Hpy188III	TCNNGA	5 cut(s)	20, 284, 309, 422, 874
Hpy8I	GTNNAC	1 cut(s)	795
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	597, 829
HpyCH4IV	ACGT	1 cut(s)	721
HpyCH4V	TGCA	5 cut(s)	52, 351, 413, 527, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	433, 448, 533
HpyF3I	CTNAG	4 cut(s)	237, 252, 300, 444
HpySE526I	ACGT	1 cut(s)	721
Hsp92I	GRCGYC	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	413
HspAI	GCGC	4 cut(s)	105, 241, 365, 946
Kzo9I	GATC	3 cut(s)	481, 568, 583
LguI	GCTCTTC	3 cut(s)	95, 634, 743
LmnI	GCTCC	3 cut(s)	22, 776, 886
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	721
MaeIII	GTNAC	1 cut(s)	686
MalI	GATC	3 cut(s)	483, 570, 585
MboI	GATC	3 cut(s)	481, 568, 583
MfeI	CAATTG	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	6 cut(s)	30, 462, 594, 676, 708, 891
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	8 cut(s)	19, 147, 283, 305, 355, 767, 835, 877
MroXI	GAANNNNTTC	1 cut(s)	839
MseI	TTAA	4 cut(s)	81, 330, 693, 714
MspA1I	CMGCKG	1 cut(s)	951
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	2 cut(s)	260, 452
MunI	CAATTG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	433, 448, 533
NdeII	GATC	3 cut(s)	481, 568, 583
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	2 cut(s)	18, 258
NspV	TTCGAA	1 cut(s)	896
PciSI	GCTCTTC	3 cut(s)	95, 634, 743
PctI	GAATGC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	839
PfeI	GAWTC	3 cut(s)	63, 125, 761
PinAI	ACCGGT	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	450, 950
PleI	GAGTC	1 cut(s)	206
PmaCI	CACGTG	1 cut(s)	722
PmlI	CACGTG	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	206
Ppu21I	YACGTR	1 cut(s)	722
PsiI	TTATAA	1 cut(s)	467
PspCI	CACGTG	1 cut(s)	722
PspN4I	GGNNCC	2 cut(s)	18, 258
PspPI	GGNCC	2 cut(s)	257, 918
SapI	GCTCTTC	3 cut(s)	95, 634, 743
SaqAI	TTAA	4 cut(s)	81, 330, 693, 714
SatI	GCNGC	2 cut(s)	449, 949
Sau3AI	GATC	3 cut(s)	481, 568, 583
Sau96I	GGNCC	2 cut(s)	257, 918
SchI	GAGTC	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	318
SfaNI	GCATC	1 cut(s)	514
SfuI	TTCGAA	1 cut(s)	896
SinI	GGWCC	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	368, 713
SmoI	CTYRAG	2 cut(s)	368, 713
Sse9I	AATT	6 cut(s)	30, 462, 594, 676, 708, 891
SsiI	CCGC	1 cut(s)	949
SspMI	CTAG	1 cut(s)	497
TaiI	ACGT	1 cut(s)	724
TaqI	TCGA	2 cut(s)	285, 896
TasI	AATT	6 cut(s)	30, 462, 594, 676, 708, 891
TauI	GCSGC	1 cut(s)	951
TfiI	GAWTC	3 cut(s)	63, 125, 761
Tru1I	TTAA	4 cut(s)	81, 330, 693, 714
Tru9I	TTAA	4 cut(s)	81, 330, 693, 714
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	1 cut(s)	448
TspDTI	ATGAA	3 cut(s)	219, 308, 621
TspRI	CASTG	1 cut(s)	358
Vha464I	CTTAAG	1 cut(s)	713
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	2 cut(s)	708, 891
XmnI	GAANNNNTTC	1 cut(s)	839
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.