AT5G40980

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0018714
Physical Location & Seq
Reverse (-)
16414510 .. 16415265
756 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40980.1

Sequence Viewer

Length: 210 bp
ATGAGTGCAGACTGGGGACCTGTGATTGTAGCAGTGGCTCTGTTCATCCTACTCTCACCAGGATTGCTATTTCAGCTACCGGCAAGGACAAGAGTGATGGAATTCGGGAACATGAGCACAAGCGGGATTTCGATTTTGGTCCACGCCATTATTTACTTCTGTATACTCACTATCTTGATCATTGCCATACAAATTCACATCCATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

69

Amino Acids

7.61

Weight (kDa)

6.81

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 3 - 68 1.9e-33 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018714)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27027 AT5G40980
malus_domestica MD09G1009300.v1.1 MD17G1001100.v1.1
prunus_persica Prupe.3G307600_v2.0.a1
pyrus_communis pycom111g00750
rosa_multiflora Rmu_sc0000998.1_g000004
rosa_samantha Rh2DG692000
rosa_wichuraiana Rw2G054680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 163
AciI CCGC 1 cut(s) 123
AcsI RAATTY 2 cut(s) 101, 192
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw21I GWGCWC 1 cut(s) 119
ApoI RAATTY 2 cut(s) 101, 192
AspS9I GGNCC 2 cut(s) 17, 139
AsuHPI GGTGA 1 cut(s) 48
AvaII GGWCC 2 cut(s) 17, 139
Bbv12I GWGCWC 1 cut(s) 119
BccI CCATC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 60
BclI TGATCA 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 2 cut(s) 17, 139
BmgT120I GGNCC 2 cut(s) 17, 139
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 60
BmrI ACTGGG 1 cut(s) 22
BmuI ACTGGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 60
BseGI GGATG 2 cut(s) 45, 198
BseMI GCAATG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 79
BssMI GATC 1 cut(s) 177
BssNAI GTATAC 1 cut(s) 164
Bst1107I GTATAC 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 45, 198
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstZ17I GTATAC 1 cut(s) 164
BtsCI GGATG 2 cut(s) 45, 198
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 17, 139
CviAII CATG 1 cut(s) 112
CviJI RGCY 2 cut(s) 38, 76
CviKI_1 RGCY 2 cut(s) 38, 76
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 17, 139
EcoO109I RGGNCCY 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 115
FaiI YATR 3 cut(s) 113, 164, 188
FaqI GGGAC 1 cut(s) 30
FatI CATG 1 cut(s) 111
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 177
FblI GTMKAC 1 cut(s) 163
FokI GGATG 2 cut(s) 32, 185
HapII CCGG 1 cut(s) 80
Hin1II CATG 1 cut(s) 115
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 48
Hpy166II GTNNAC 2 cut(s) 142, 164
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 2 cut(s) 106, 175
Hpy8I GTNNAC 2 cut(s) 142, 164
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
Hsp92II CATG 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 1 cut(s) 177
LpnPI CCDG 4 cut(s) 33, 45, 72, 93
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 2 cut(s) 101, 192
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 73
NdeII GATC 1 cut(s) 177
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 18
PpuMI RGGWCCY 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 2 cut(s) 17, 139
PspPPI RGGWCCY 1 cut(s) 17
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 2 cut(s) 17, 139
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 1 cut(s) 119
SetI ASST 2 cut(s) 22, 78
SinI GGWCC 2 cut(s) 17, 139
Sse9I AATT 2 cut(s) 101, 192
SsiI CCGC 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 58
TaqI TCGA 1 cut(s) 131
TasI AATT 2 cut(s) 101, 192
TscAI CASTG 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 34
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 2 cut(s) 17, 139
XapI RAATTY 2 cut(s) 101, 192
XmiI GTMKAC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.