Rw2G054680

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018714
Physical Location & Seq
Reverse (-)
82248326 .. 82249286
961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G054680.1

Sequence Viewer

Length: 216 bp
ATGATGAGTGCTGATTGGGGGCCGGTCGTTGTTGCGGTGGTCTTGTTCATTCTCTTGTCGCCGGGGCTGCTATTCCAATTACCAGCAAGGACAAGGGTGATGGAGTTCGGAAACATGATGACAAGCGGGATTGCTATCCTGGTTCATGCCATCATATACTTCTGCATACTTACTATCTTGATCATTGCAATTGGTATTCACATACATATCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

71

Amino Acids

7.79

Weight (kDa)

6.81

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 4 - 69 8.1e-33 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018714)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27027 AT5G40980
malus_domestica MD09G1009300.v1.1 MD17G1001100.v1.1
prunus_persica Prupe.3G307600_v2.0.a1
pyrus_communis pycom111g00750
rosa_multiflora Rmu_sc0000998.1_g000004
rosa_samantha Rh2DG692000
rosa_wichuraiana Rw2G054680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 35, 126
AjnI CCWGG 1 cut(s) 138
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 20
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 109
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 94, 158
BciT130I CCWGG 1 cut(s) 140
BclI TGATCA 1 cut(s) 180
BcnI CCSGG 1 cut(s) 63
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme1390I CCNGG 2 cut(s) 63, 140
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 2 cut(s) 63, 140
BpuMI CCSGG 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 183
Bse8I GATNNNNATC 1 cut(s) 134
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 62
BseJI GATNNNNATC 1 cut(s) 134
BseMI GCAATG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 54
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 22
BsiEI CGRYCG 1 cut(s) 27
BsiSI CCGG 2 cut(s) 23, 62
BsnI GGCC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 2 cut(s) 35, 126
BspANI GGCC 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 140
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 61, 138
BstV1I GCAGC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 20
CviAII CATG 2 cut(s) 115, 146
CviJI RGCY 2 cut(s) 22, 67
CviKI_1 RGCY 2 cut(s) 22, 67
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 118, 149
FaiI YATR 7 cut(s) 116, 147, 155, 157, 167, 203, 207
FatI CATG 2 cut(s) 114, 145
FauI CCCGC 1 cut(s) 119
FbaI TGATCA 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 68
GluI GCNGC 1 cut(s) 68
HaeIII GGCC 1 cut(s) 22
HapII CCGG 2 cut(s) 23, 62
Hin1II CATG 2 cut(s) 118, 149
HpaII CCGG 2 cut(s) 23, 62
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 165, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
Hsp92II CATG 2 cut(s) 118, 149
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 1 cut(s) 180
LpnPI CCDG 5 cut(s) 36, 75, 96, 125, 152
Lsp1109I GCAGC 1 cut(s) 54
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MfeI CAATTG 1 cut(s) 189
MluCI AATT 2 cut(s) 77, 189
MspI CCGG 2 cut(s) 23, 62
MspR9I CCNGG 2 cut(s) 63, 140
MunI CAATTG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 63
NdeII GATC 1 cut(s) 180
NlaIII CATG 2 cut(s) 118, 149
NlaIV GGNNCC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 20
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 63, 140
Sse9I AATT 2 cut(s) 77, 189
SsiI CCGC 2 cut(s) 35, 126
StyD4I CCNGG 2 cut(s) 61, 138
TasI AATT 2 cut(s) 77, 189
TseI GCWGC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 37, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.