MD09G1009300.v1.1

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0018714
Physical Location & Seq
Forward (+)
666594 .. 666806
213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1009300.v1.1.491

Sequence Viewer

Length: 213 bp
ATGAGTGCTGATTGGGGGCCGGTTGTTGTTGCAGTTGTTTTGTTCATCCTCCTGTCGCCCGGGCTGCTATTCCAACTACCGGCAAGACATAGGGTGATGGAGTTCGGAAACATGTCCACAAGCGGGATTGCTATTCTTGTTCATGCCATCATATACTTCTGCATAATCACCATCTTGATCATTGCAATTGGTATTCACATACATTTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

71

Amino Acids

7.69

Weight (kDa)

6.89

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 3 - 68 2e-33 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018714)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27027 AT5G40980
malus_domestica MD09G1009300.v1.1 MD17G1001100.v1.1
prunus_persica Prupe.3G307600_v2.0.a1
pyrus_communis pycom111g00750
rosa_multiflora Rmu_sc0000998.1_g000004
rosa_samantha Rh2DG692000
rosa_wichuraiana Rw2G054680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 79, 123
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 2 cut(s) 60, 61
AsuHPI GGTGA 2 cut(s) 106, 160
AvaI CYCGRG 1 cut(s) 59
BbvI GCAGC 1 cut(s) 51
BccI CCATC 3 cut(s) 91, 155, 179
BclI TGATCA 1 cut(s) 177
BcnI CCSGG 2 cut(s) 60, 61
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 2 cut(s) 60, 61
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 60, 61
BpuMI CCSGG 2 cut(s) 60, 61
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 123
Bse118I RCCGGY 2 cut(s) 19, 79
Bse3DI GCAATG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 79, 123
BseMI GCAATG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 51
BshFI GGCC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 3 cut(s) 20, 60, 80
BslI CCNNNNNNNGG 2 cut(s) 79, 123
BsnI GGCC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 59
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 2 cut(s) 19, 79
BssAI RCCGGY 2 cut(s) 19, 79
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 1 cut(s) 177
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 58, 59
BstV1I GCAGC 1 cut(s) 51
BsuRI GGCC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 45
Cfr10I RCCGGY 2 cut(s) 19, 79
Cfr13I GGNCC 1 cut(s) 17
Cfr9I CCCGGG 1 cut(s) 59
CviAII CATG 2 cut(s) 112, 143
CviJI RGCY 2 cut(s) 19, 64
CviKI_1 RGCY 2 cut(s) 19, 64
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 59
FaeI CATG 2 cut(s) 115, 146
FaiI YATR 7 cut(s) 90, 113, 144, 152, 154, 164, 200
FatI CATG 2 cut(s) 111, 142
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 65
HaeIII GGCC 1 cut(s) 19
HapII CCGG 3 cut(s) 20, 60, 80
Hin1II CATG 2 cut(s) 115, 146
HpaII CCGG 3 cut(s) 20, 60, 80
HphI GGTGA 2 cut(s) 106, 160
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 32, 162, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
Hsp92II CATG 2 cut(s) 115, 146
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 1 cut(s) 177
LpnPI CCDG 4 cut(s) 33, 65, 73, 93
Lsp1109I GCAGC 1 cut(s) 51
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MfeI CAATTG 1 cut(s) 186
MluCI AATT 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 1 cut(s) 59
MspI CCGG 3 cut(s) 20, 60, 80
MspR9I CCNGG 2 cut(s) 60, 61
MunI CAATTG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 64
NciI CCSGG 2 cut(s) 60, 61
NdeII GATC 1 cut(s) 177
NlaIII CATG 2 cut(s) 115, 146
NlaIV GGNNCC 1 cut(s) 18
NspI RCATGY 1 cut(s) 115
PciI ACATGT 1 cut(s) 111
PkrI GCNGC 1 cut(s) 66
PscI ACATGT 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 17
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 60, 61
SmaI CCCGGG 1 cut(s) 61
SrfI GCCCGGGC 1 cut(s) 61
Sse9I AATT 1 cut(s) 186
SsiI CCGC 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 58, 59
TasI AATT 1 cut(s) 186
TseI GCWGC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 34, 131
TspMI CCCGGG 1 cut(s) 59
XceI RCATGY 1 cut(s) 115
XmaI CCCGGG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.