MD17G1001100.v1.1

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0018714
Physical Location & Seq
Reverse (-)
44535 .. 44747
213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1001100.v1.1.491

Sequence Viewer

Length: 213 bp
ATGAGTGCTGATTGGGGGCCGGTCGTTGTTGCAGTGGTGATGTTCATCCTCTTGTCGCCCGGGCTGCTATTCCAATTACCGGCAAGGACTAGGGTGATGGAGTTCGGAAACATGTCCACAAGTGGGATTGCTATTCTTGTTCACGCCGTCATATACTTCTGCATAATCACCATCTTGGTCATTGCAATTGGTATTCACATACATGTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

71

Amino Acids

7.59

Weight (kDa)

6.81

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 3 - 68 7.2e-33 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018714)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27027 AT5G40980
malus_domestica MD09G1009300.v1.1 MD17G1001100.v1.1
prunus_persica Prupe.3G307600_v2.0.a1
pyrus_communis pycom111g00750
rosa_multiflora Rmu_sc0000998.1_g000004
rosa_samantha Rh2DG692000
rosa_wichuraiana Rw2G054680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 79, 123
AflIII ACRYGT 2 cut(s) 111, 202
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 2 cut(s) 60, 61
AsuHPI GGTGA 3 cut(s) 49, 106, 160
AvaI CYCGRG 1 cut(s) 59
BbvI GCAGC 1 cut(s) 51
BccI CCATC 2 cut(s) 91, 179
BceAI ACGGC 1 cut(s) 131
BcnI CCSGG 2 cut(s) 60, 61
BfaI CTAG 1 cut(s) 90
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 2 cut(s) 60, 61
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 60, 61
BpuMI CCSGG 2 cut(s) 60, 61
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 123
Bse118I RCCGGY 2 cut(s) 19, 79
Bse3DI GCAATG 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 45
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 79, 123
BseMI GCAATG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 3 cut(s) 20, 60, 80
BslI CCNNNNNNNGG 2 cut(s) 79, 123
BsnI GGCC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 59
BspANI GGCC 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 2 cut(s) 19, 79
BssAI RCCGGY 2 cut(s) 19, 79
BssECI CCNNGG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 45
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNSI RCATGY 2 cut(s) 115, 206
BstSCI CCNGG 2 cut(s) 58, 59
BstV1I GCAGC 1 cut(s) 51
BsuRI GGCC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cfr10I RCCGGY 2 cut(s) 19, 79
Cfr13I GGNCC 1 cut(s) 17
Cfr9I CCCGGG 1 cut(s) 59
CviAII CATG 2 cut(s) 112, 203
CviJI RGCY 2 cut(s) 19, 64
CviKI_1 RGCY 2 cut(s) 19, 64
Eco88I CYCGRG 1 cut(s) 59
FaeI CATG 2 cut(s) 115, 206
FaiI YATR 6 cut(s) 113, 152, 154, 164, 200, 204
FatI CATG 2 cut(s) 111, 202
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 1 cut(s) 90
GluI GCNGC 1 cut(s) 65
HaeIII GGCC 1 cut(s) 19
HapII CCGG 3 cut(s) 20, 60, 80
Hin1II CATG 2 cut(s) 115, 206
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HpaII CCGG 3 cut(s) 20, 60, 80
HphI GGTGA 3 cut(s) 49, 106, 160
Hpy166II GTNNAC 3 cut(s) 117, 142, 208
Hpy188I TCNGA 1 cut(s) 107
Hpy8I GTNNAC 3 cut(s) 117, 142, 208
HpyCH4V TGCA 3 cut(s) 32, 162, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
Hsp92II CATG 2 cut(s) 115, 206
LpnPI CCDG 3 cut(s) 33, 73, 93
Lsp1109I GCAGC 1 cut(s) 51
MaeI CTAG 1 cut(s) 90
MfeI CAATTG 1 cut(s) 186
MluCI AATT 2 cut(s) 74, 186
MnlI CCTC 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 3 cut(s) 20, 60, 80
MspR9I CCNGG 2 cut(s) 60, 61
MunI CAATTG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 64
NciI CCSGG 2 cut(s) 60, 61
NlaIII CATG 2 cut(s) 115, 206
NlaIV GGNNCC 1 cut(s) 18
NspI RCATGY 2 cut(s) 115, 206
PciI ACATGT 2 cut(s) 111, 202
PkrI GCNGC 1 cut(s) 66
PscI ACATGT 2 cut(s) 111, 202
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 201
SatI GCNGC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 60, 61
SmaI CCCGGG 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 201
SrfI GCCCGGGC 1 cut(s) 61
Sse9I AATT 2 cut(s) 74, 186
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 2 cut(s) 58, 59
TasI AATT 2 cut(s) 74, 186
TscAI CASTG 1 cut(s) 39
TseI GCWGC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 34
TspMI CCCGGG 1 cut(s) 59
TspRI CASTG 1 cut(s) 39
XceI RCATGY 2 cut(s) 115, 206
XmaI CCCGGG 1 cut(s) 59
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.