AT5G41350

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005443
Physical Location & Seq
Reverse (-)
16541462 .. 16543985
2524 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41350.2

Sequence Viewer

Length: 639 bp
ATGGGAGGTTGCTGTTGTTGTTCTTCTTCACGAAGAGCTGATGTAGATAATGGACCTGCGTACTACTACTACCCAAGGGCAACAGAAGAGCGTGTGCCTTTATCTTCCGCTCATAACAGGACTTCCTCTGCAATCTCTACTGGTGTTGTAGTAGTAGACACAAACTTAGAGACATCATCTCCTGATGCTTATATACCACCGCCACTGCCTACCCCTTTCGATGTGCCTATAGGGATTCCTCAAACACCAGCTAGTGGTGAAGAGGCTACTTGTGTTGATATAAGAGAGGTTTCGGTGGACTCTGCTAATACCGAGTCTGCTCAAGAAACAGTTGATGGTATTACTCTCGGGGTTCCAACTACATGCTCACATAAAGAGACAGATAGCAAAATCCAAACAGAGATTGATCTTGAATCTACTGAAGAAATAGACCCGAAGCTATCAAAAGCTGTTTTTATACCAATAGAGGAAGAGGAGGATTGTCCCATATGTTTGGAAGAATATGATATCGAGAACCCGAAACTTGTAGCCAAATGTGATCACCATTTTCACCTTGCATGCATTCTAGAATGGATGGAGAGAAGTGAAACCTGCCCCGTCTGCAACAAGGAAATGGTATTTGACTCTACTCTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

212

Amino Acids

23.19

Weight (kDa)

4.27

Isoelectric Point (pI)

63.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 183 - 227 1.2e-10 RING-H2 zinc finger domain
zf-RING_2 PF13639 185 - 227 3.9e-13 Ring finger domain
zf-RING_11 PF17123 185 - 213 2.2e-07 RING-like zinc finger
zf-C3HC4_2 PF13923 186 - 226 1.5e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 186 - 226 1.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 186 - 224 5.2e-08 RING-type zinc-finger
zf-ANAPC11 PF12861 186 - 232 4.2e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 64, 599
AccB7I CCANNNNNTGG 1 cut(s) 254
AccBSI CCGCTC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 156
AciI CCGC 2 cut(s) 108, 200
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 1 cut(s) 413
AluBI AGCT 4 cut(s) 38, 251, 439, 449
AluI AGCT 4 cut(s) 38, 251, 439, 449
Alw26I GTCTC 2 cut(s) 164, 371
Ama87I CYCGRG 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 3 cut(s) 269, 533, 542
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 1 cut(s) 53
BccI CCATC 2 cut(s) 329, 568
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 2 cut(s) 164, 371
BfaI CTAG 3 cut(s) 252, 566, 637
BfmI CTRYAG 1 cut(s) 228
BfuAI ACCTGC 2 cut(s) 64, 599
Bme18I GGWCC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 354
BmsI GCATC 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 74
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 579
BseLI CCNNNNNNNGG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 488
BsiHKCI CYCGRG 1 cut(s) 347
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 2 cut(s) 164, 371
BsmFI GGGAC 1 cut(s) 468
BsmI GAATGC 1 cut(s) 561
BsoBI CYCGRG 1 cut(s) 347
Bsp143I GATC 2 cut(s) 406, 538
BspACI CCGC 2 cut(s) 108, 200
BspLI GGNNCC 1 cut(s) 354
BspMI ACCTGC 2 cut(s) 64, 599
BspQI GCTCTTC 2 cut(s) 28, 81
BsrBI CCGCTC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 2 cut(s) 406, 538
BssT1I CCWWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 4 cut(s) 28, 81, 255, 465
BstC8I GCNNGC 1 cut(s) 559
BstDEI CTNAG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 579
BstKTI GATC 2 cut(s) 409, 541
BstMAI GTCTC 2 cut(s) 164, 371
BstMBI GATC 2 cut(s) 406, 538
BstMWI GCNNNNNNNGC 1 cut(s) 600
BstNSI RCATGY 2 cut(s) 366, 561
BstSFI CTRYAG 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 493
BtsCI GGATG 1 cut(s) 579
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 203
BveI ACCTGC 2 cut(s) 64, 599
Cac8I GCNNGC 1 cut(s) 559
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 61
CviAII CATG 2 cut(s) 363, 558
CviJI RGCY 6 cut(s) 38, 251, 266, 439, 449, 530
CviKI_1 RGCY 6 cut(s) 38, 251, 266, 439, 449, 530
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 1 cut(s) 166
DpnI GATC 2 cut(s) 408, 540
DpnII GATC 2 cut(s) 406, 538
Eam1104I CTCTTC 4 cut(s) 28, 81, 255, 465
EarI CTCTTC 4 cut(s) 28, 81, 255, 465
Eco130I CCWWGG 1 cut(s) 74
Eco32I GATATC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 347
EcoRV GATATC 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 563
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 2 cut(s) 366, 561
FaqI GGGAC 1 cut(s) 468
FatI CATG 2 cut(s) 362, 557
FauNDI CATATG 1 cut(s) 488
FbaI TGATCA 1 cut(s) 538
FblI GTMKAC 1 cut(s) 156
FokI GGATG 1 cut(s) 586
FspBI CTAG 3 cut(s) 252, 566, 637
Hin1II CATG 2 cut(s) 366, 561
HinfI GANTC 5 cut(s) 235, 299, 314, 413, 623
HphI GGTGA 3 cut(s) 269, 533, 542
Hpy166II GTNNAC 2 cut(s) 157, 298
Hpy188III TCNNGA 7 cut(s) 30, 182, 323, 410, 511, 566, 632
Hpy8I GTNNAC 2 cut(s) 157, 298
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4V TGCA 4 cut(s) 131, 557, 561, 603
HpyF10VI GCNNNNNNNGC 1 cut(s) 600
HpyF3I CTNAG 1 cut(s) 166
Hsp92II CATG 2 cut(s) 366, 561
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 2 cut(s) 406, 538
LguI GCTCTTC 2 cut(s) 28, 81
LpnPI CCDG 6 cut(s) 69, 103, 126, 195, 261, 604
LweI GCATC 1 cut(s) 175
MaeI CTAG 3 cut(s) 252, 566, 637
MalI GATC 2 cut(s) 408, 540
MbiI CCGCTC 1 cut(s) 110
MboI GATC 2 cut(s) 406, 538
MboII GAAGA 9 cut(s) 15, 18, 45, 96, 98, 272, 434, 482, 509
MlyI GAGTC 3 cut(s) 293, 323, 617
MmeI TCCRAC 1 cut(s) 380
MnlI CCTC 7 cut(s) 136, 249, 256, 280, 460, 466, 469
Mph1103I ATGCAT 1 cut(s) 563
Mva1269I GAATGC 1 cut(s) 561
MwoI GCNNNNNNNGC 1 cut(s) 600
NdeI CATATG 1 cut(s) 488
NdeII GATC 2 cut(s) 406, 538
NlaIII CATG 2 cut(s) 366, 561
NlaIV GGNNCC 1 cut(s) 354
NsiI ATGCAT 1 cut(s) 563
NspI RCATGY 2 cut(s) 366, 561
PaeI GCATGC 1 cut(s) 561
PciSI GCTCTTC 2 cut(s) 28, 81
PctI GAATGC 1 cut(s) 561
PfeI GAWTC 2 cut(s) 235, 413
PflMI CCANNNNNTGG 1 cut(s) 254
PleI GAGTC 3 cut(s) 293, 322, 617
PpsI GAGTC 3 cut(s) 293, 322, 617
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 1 cut(s) 53
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SapI GCTCTTC 2 cut(s) 28, 81
Sau3AI GATC 2 cut(s) 406, 538
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 3 cut(s) 293, 323, 617
SetI ASST 9 cut(s) 10, 40, 58, 253, 291, 441, 451, 555, 593
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 321
SmoI CTYRAG 1 cut(s) 321
SphI GCATGC 1 cut(s) 561
SsiI CCGC 2 cut(s) 108, 200
SspMI CTAG 3 cut(s) 252, 566, 637
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 331
TaqI TCGA 2 cut(s) 219, 510
TfiI GAWTC 2 cut(s) 235, 413
TscAI CASTG 1 cut(s) 210
TspRI CASTG 1 cut(s) 210
Van91I CCANNNNNTGG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 53
XbaI TCTAGA 1 cut(s) 565
XceI RCATGY 2 cut(s) 366, 561
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 3 cut(s) 252, 566, 637
Zsp2I ATGCAT 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.