Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005443

Physical Location & Seq

Genomic Coordinates Reverse (-)

11048194 .. 11051198

Gene Structure 3005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G103600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGAGGCTGCTGCTGTTGTTCTTCCAAAGGAACTGAAATAGGTGCTGCACCGACATACTATTACTATCCAAGGTCATCGGATGAGCATGTGCCATTGTCGTCTCGCCAAGGTGTTACCTCTGCACTCTCCACAGGGCTTCTCGTTGATACAAATTTGGATACATCAATACCTGACACTTATAGACCACCTCCTACCCCTATTCCATATGACGTGGCTGTAGTAGGGCATCCTCATACTCCACCAGCGGCTCAAGAAATTTGTGGCAACAAGAGTGAAGGTGCAGTGCTGACAACAAATTCTGATTCTGTTCATGAAGCAGTTGGTGGAAATGCTCAAGAAGCTTCACCTAAGTGTGAAGACCTGAAGGATTCAGACTGTAAGGCCCAAACTGATTTTGAACTTGATGCGGAAAAGAAGTCAGAAGTTGAACTTTCGAAGTCAGTGGAATCTGTTGCTTTAGTACCAGAGGAAGAGGATGTCTGCCCCACCTGTTTGGAAGAGTATGATGCACAGAATCCAAAAATTACCACAAAATGCGAGCATCATTTTCACCTTGCTTGCATTCTTGAATGGATGGAACGAAGTGACACATGTCCTGTGTGTGATCAGGAAATGATATTTGATCCTCCAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

213

Amino Acids

22.96

Weight (kDa)

4.4

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41350 AT5G41350 AT5G41350
fragaria_vesca	FvH4_5g02791
malus_domestica	MD06G1087300.v1.1 MD14G1108200.v1.1
prunus_persica	Prupe.5G103600_v2.0.a1
pyrus_communis	pycom06g08340 pycom14g10290
rosa_chinensis	RchiOBHm_Chr5g0014691 RchiOBHm_Chr7g0197151
rosa_laevigata	RLG00000003957
rosa_multiflora	Rmu_ssc0000465.1_g000022
rosa_roxburghii	Rroxscaffold_3G00258650 Rroxscaffold_7G00198200
rosa_rugosa	Rorug07G0038200 Rorug07G0038200 Rorug07G0038200 Rorug07G0038200 Rorug07G0038200 Rorug07G0038200 Rorug07G0038200 Rorug07G0038200
rosa_samantha	Rh5CG124000 Rh7AG162800 Rh7BG164800 Rh7CG170800 Rh7DG164200
rosa_wichuraiana	Rw7G014210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	248, 410
AclWI	GGATC	1 cut(s)	620
AcsI	RAATTY	3 cut(s)	154, 258, 298
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	465
AflIII	ACRYGT	1 cut(s)	593
AgsI	TTSAA	3 cut(s)	401, 431, 572
AjiI	CACGTC	1 cut(s)	214
AleI	CACNNNNGTG	1 cut(s)	352
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	620
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	3 cut(s)	9, 12, 47
ApoI	RAATTY	3 cut(s)	154, 258, 298
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	339, 545
AsuII	TTCGAA	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	571
BciVI	GTATCC	1 cut(s)	154
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	154
BisI	GCNGC	4 cut(s)	10, 13, 48, 249
BlsI	GCNGC	4 cut(s)	11, 14, 49, 250
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	385
BmsI	GCATC	4 cut(s)	238, 397, 499, 553
BoxI	GACNNNNGTC	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	366
Bpu14I	TTCGAA	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	237, 321
BsaJI	CCNNGG	2 cut(s)	71, 109
BseDI	CCNNGG	2 cut(s)	71, 109
BseGI	GGATG	4 cut(s)	88, 229, 484, 582
BseXI	GCAGC	1 cut(s)	34
BsgI	GTGCAG	3 cut(s)	33, 108, 303
BshFI	GGCC	1 cut(s)	386
BsmAI	GTCTC	1 cut(s)	108
BsmBI	CGTCTC	1 cut(s)	108
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	437
Bsp143I	GATC	2 cut(s)	607, 625
BspACI	CCGC	2 cut(s)	248, 410
BspANI	GGCC	1 cut(s)	386
BspHI	TCATGA	1 cut(s)	313
BspPI	GGATC	1 cut(s)	620
BspT104I	TTCGAA	1 cut(s)	437
BssECI	CCNNGG	2 cut(s)	71, 109
BssMI	GATC	2 cut(s)	607, 625
BssT1I	CCWWGG	2 cut(s)	71, 109
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	2 cut(s)	468, 495
BstBI	TTCGAA	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	542, 562
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	4 cut(s)	88, 229, 484, 582
BstKTI	GATC	2 cut(s)	610, 628
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	2 cut(s)	607, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNSI	RCATGY	2 cut(s)	92, 597
BstPAI	GACNNNNGTC	1 cut(s)	594
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	366
BstXI	CCANNNNNNTGG	1 cut(s)	496
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	386
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	4 cut(s)	88, 229, 484, 582
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	291, 450
Cac8I	GCNNGC	2 cut(s)	542, 562
CciI	TCATGA	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	3 cut(s)	89, 314, 594
CviJI	RGCY	6 cut(s)	9, 139, 218, 251, 344, 386
CviKI_1	RGCY	6 cut(s)	9, 139, 218, 251, 344, 386
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	2 cut(s)	609, 627
DpnII	GATC	2 cut(s)	607, 625
Eam1104I	CTCTTC	2 cut(s)	468, 495
EarI	CTCTTC	2 cut(s)	468, 495
Eco130I	CCWWGG	2 cut(s)	71, 109
Eco57I	CTGAAG	1 cut(s)	386
EcoT14I	CCWWGG	2 cut(s)	71, 109
ErhI	CCWWGG	2 cut(s)	71, 109
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	3 cut(s)	92, 317, 597
FaiI	YATR	9 cut(s)	58, 90, 183, 208, 210, 237, 315, 507, 595
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FatI	CATG	3 cut(s)	88, 313, 593
FauNDI	CATATG	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	4 cut(s)	10, 13, 48, 249
FokI	GGATG	4 cut(s)	95, 216, 491, 589
Fsp4HI	GCNGC	4 cut(s)	10, 13, 48, 249
GluI	GCNGC	4 cut(s)	10, 13, 48, 249
HaeIII	GGCC	1 cut(s)	386
Hin1II	CATG	3 cut(s)	92, 317, 597
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	4 cut(s)	305, 371, 449, 517
HphI	GGTGA	2 cut(s)	339, 545
Hpy188I	TCNGA	4 cut(s)	82, 304, 376, 424
Hpy188III	TCNNGA	5 cut(s)	254, 314, 338, 569, 611
HpyAV	CCTTC	2 cut(s)	272, 361
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	5 cut(s)	50, 125, 284, 512, 564
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	92, 317, 597
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	2 cut(s)	607, 625
LpnPI	CCDG	8 cut(s)	120, 186, 258, 377, 480, 505, 596, 612
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	4 cut(s)	238, 397, 499, 553
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	115, 587
MalI	GATC	2 cut(s)	609, 627
MboI	GATC	2 cut(s)	607, 625
MboII	GAAGA	4 cut(s)	15, 371, 485, 512
MluCI	AATT	5 cut(s)	154, 258, 298, 525, 633
MnlI	CCTC	6 cut(s)	130, 201, 243, 463, 469, 639
MslI	CAYNNNNRTG	1 cut(s)	352
MspA1I	CMGCKG	1 cut(s)	248
Mva1269I	GAATGC	1 cut(s)	564
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	2 cut(s)	607, 625
NlaIII	CATG	3 cut(s)	92, 317, 597
NmuCI	GTSAC	1 cut(s)	587
NspI	RCATGY	2 cut(s)	92, 597
NspV	TTCGAA	1 cut(s)	437
OliI	CACNNNNGTG	1 cut(s)	352
PagI	TCATGA	1 cut(s)	313
PciI	ACATGT	1 cut(s)	593
PctI	GAATGC	1 cut(s)	564
PfeI	GAWTC	4 cut(s)	305, 371, 449, 517
PkrI	GCNGC	4 cut(s)	11, 14, 49, 250
PscI	ACATGT	1 cut(s)	593
PshAI	GACNNNNGTC	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	385
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
RseI	CAYNNNNRTG	1 cut(s)	352
SatI	GCNGC	4 cut(s)	10, 13, 48, 249
Sau3AI	GATC	2 cut(s)	607, 625
Sau96I	GGNCC	1 cut(s)	385
SfaNI	GCATC	4 cut(s)	238, 397, 499, 553
SfcI	CTRYAG	1 cut(s)	219
SfuI	TTCGAA	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	252, 336
SmoI	CTYRAG	2 cut(s)	252, 336
Sse9I	AATT	5 cut(s)	154, 258, 298, 525, 633
SsiI	CCGC	2 cut(s)	248, 410
StyI	CCWWGG	2 cut(s)	71, 109
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	437
TasI	AATT	5 cut(s)	154, 258, 298, 525, 633
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	4 cut(s)	305, 371, 449, 517
TscAI	CASTG	2 cut(s)	291, 450
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	3 cut(s)	9, 12, 47
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	2 cut(s)	302, 330
TspRI	CASTG	2 cut(s)	291, 450
XapI	RAATTY	3 cut(s)	154, 258, 298
XceI	RCATGY	2 cut(s)	92, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.