AT5G41760

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015122
Physical Location & Seq
Forward (+)
16706850 .. 16709909
3060 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41760.1

Sequence Viewer

Length: 1023 bp
ATGGCGGCTACTCCGTGGTACTTTGTCGCAGTACTTCTCACCATTCTTACCAGCTCTCAGGGGATTCTAACAACTCTTTCTCAAAGTGATGGAGGTTATAAGTATGATTATGCTACTGTTCCCTTTCTTGCTGAAGTTTTTAAGCTGATCATTTCTGGTTTATTTCTCTGGAGAGAGATGCGGACATCTTCCTCAACAACTTCAAGGATTACTACGGATTGGAAGAGTGTGCGATTATTTGTTATTCCGTCTCTTATTTATCTGATACATAACAATGTGCAGTTTGCTACATTGACTTATGTGGATACGTCCACTTATCAGATAATGGGTAATTTGAAGATTGTGACCACTGGCATACTGTTTAGGTTATTTTTGAAAAGGAAACTATCTAAACTTCAGTGGATGGCAATTGGTCTTTTAGCTGTTGGAACAACTACCAGCCAGGTTAAGGGTTGTGGAGAAGCTTCTTGTGATTCTTTATTCACGGCACCAATACAAGGTTATTTGCTGGGCATCCTCTCAGCTGGTTTGTCCGCGCTAGCTGGAATCTACACAGAGTTTCTGATGAAGAGAAACAATGACACCTTATACTGGCAAAACTTGCAGTTATATACGTTTGGTTCACTTTTCAACGTAGCTCGACTTATAGCAGATGATTTCAGACACGGGTTTGAAAAGGGTCCTTGGTGGCAACGTATCTTTGATGGGTACAGCATCACCACTTGGCTGGTAGTTCTGAATCTCGGATCCACTGGCTTACTGGTCTCGTGGTTAATGAAGTATGCAGACAACATCGTCAAGGTTTATTCTACATCAATGGCGATGCTACTTACTATGGTTGCATCCATATACCTTTTTAGCTTCAAACCGACACTGCAGCTTTTCTTGGGTATTGTCATATGCATCATGTCACTCCATATGTACTTTGCTCCTCCACACACGCTCGTGGACTTGCCCGTGACAAACGAAGCACATGCCAAGACCTTAAAGCAAGTTGTCGTAGAAGAAAAGACAGATTCTTGA

Protein Analysis

340

Amino Acids

38.21

Weight (kDa)

9.07

Isoelectric Point (pI)

28.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuc_sug_transp PF04142 7 - 308 7.7e-55 Nucleotide-sugar transporter
EamA PF00892 20 - 144 3.2e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41760 AT5G41760
fragaria_vesca FvH4_5g03970
malus_domestica MD06G1101100.v1.1 MD14G1120800.v1.1
prunus_persica Prupe.5G114600_v2.0.a1
pyrus_communis pycom06g09620
rosa_chinensis RchiOBHm_Chr7g0195531
rosa_laevigata RLG00000004112
rosa_multiflora Rmu_co8492915.1_g000001 Rmu_ssc0000078.1_g000003
rosa_roxburghii Rroxscaffold_3G00260390
rosa_rugosa Rorug07G0023900
rosa_samantha Rh7CG156800 Rh7DG152600
rosa_wichuraiana Rw7G012950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AasI GACNNNNNNGTC 1 cut(s) 794
AccB1I GGYRCC 1 cut(s) 487
AccII CGCG 1 cut(s) 536
AciI CCGC 3 cut(s) 5, 181, 534
AclWI GGATC 2 cut(s) 741, 754
AcuI CTGAAG 2 cut(s) 153, 380
AfaI GTAC 4 cut(s) 20, 33, 710, 923
AfiI CCNNNNNNNGG 3 cut(s) 448, 497, 591
AgsI TTSAA 6 cut(s) 204, 337, 376, 631, 674, 865
AjnI CCWGG 1 cut(s) 441
AleI CACNNNNGTG 1 cut(s) 944
AluBI AGCT 9 cut(s) 54, 145, 422, 464, 524, 542, 638, 861, 880
AluI AGCT 9 cut(s) 54, 145, 422, 464, 524, 542, 638, 861, 880
Alw26I GTCTC 2 cut(s) 255, 769
AlwI GGATC 2 cut(s) 741, 754
ApeKI GCWGC 1 cut(s) 877
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 1 cut(s) 680
AsuHPI GGTGA 2 cut(s) 31, 709
AsuNHI GCTAGC 1 cut(s) 538
AvaII GGWCC 1 cut(s) 680
BamHI GGATCC 1 cut(s) 746
BanI GGYRCC 1 cut(s) 487
BauI CACGAG 2 cut(s) 766, 944
BbvI GCAGC 1 cut(s) 889
BccI CCATC 3 cut(s) 83, 397, 698
BceAI ACGGC 1 cut(s) 501
BcgI CGANNNNNNTGC 2 cut(s) 956, 990
BciT130I CCWGG 1 cut(s) 443
BciVI GTATCC 1 cut(s) 298
BclI TGATCA 1 cut(s) 147
BcoDI GTCTC 2 cut(s) 255, 769
BfaI CTAG 1 cut(s) 539
BfmI CTRYAG 1 cut(s) 875
BfuI GTATCC 1 cut(s) 298
BisI GCNGC 2 cut(s) 6, 878
BlsI GCNGC 2 cut(s) 7, 879
BmcAI AGTACT 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 443
Bme18I GGWCC 1 cut(s) 680
BmgT120I GGNCC 1 cut(s) 680
BmiI GGNNCC 3 cut(s) 489, 681, 748
BmrFI CCNGG 1 cut(s) 443
BmsI GCATC 6 cut(s) 168, 522, 723, 813, 851, 912
BmtI GCTAGC 1 cut(s) 542
BpmI CTGGAG 1 cut(s) 190
BsaI GGTCTC 1 cut(s) 769
BsaJI CCNNGG 2 cut(s) 14, 683
Bsc4I CCNNNNNNNGG 3 cut(s) 448, 497, 591
Bse1I ACTGG 4 cut(s) 355, 596, 757, 765
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 2 cut(s) 14, 683
BseGI GGATG 3 cut(s) 408, 513, 842
BseLI CCNNNNNNNGG 3 cut(s) 448, 497, 591
BseMII CTCAG 2 cut(s) 71, 534
BseNI ACTGG 4 cut(s) 355, 596, 757, 765
BseRI GAGGAG 1 cut(s) 921
BseXI GCAGC 1 cut(s) 889
BseYI CCCAGC 1 cut(s) 508
BsgI GTGCAG 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 536
BshNI GGYRCC 1 cut(s) 487
BslI CCNNNNNNNGG 3 cut(s) 448, 497, 591
BsmAI GTCTC 2 cut(s) 255, 769
BsmBI CGTCTC 1 cut(s) 255
Bso31I GGTCTC 1 cut(s) 769
Bsp143I GATC 2 cut(s) 147, 746
BspACI CCGC 3 cut(s) 5, 181, 534
BspCNI CTCAG 2 cut(s) 70, 533
BspFNI CGCG 1 cut(s) 536
BspLI GGNNCC 3 cut(s) 489, 681, 748
BspMAI CTGCAG 1 cut(s) 879
BspOI GCTAGC 1 cut(s) 542
BspPI GGATC 2 cut(s) 741, 754
BspT107I GGYRCC 1 cut(s) 487
BspTNI GGTCTC 1 cut(s) 769
BsrI ACTGG 4 cut(s) 355, 596, 757, 765
BssECI CCNNGG 2 cut(s) 14, 683
BssMI GATC 2 cut(s) 147, 746
BssSI CACGAG 2 cut(s) 766, 944
BssT1I CCWWGG 1 cut(s) 683
Bst2BI CACGAG 2 cut(s) 766, 944
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 2 cut(s) 118, 360
Bst6I CTCTTC 2 cut(s) 218, 563
BstAPI GCANNNNNTGC 1 cut(s) 601
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 2 cut(s) 57, 520
BstDSI CCRYGG 1 cut(s) 14
BstF5I GGATG 3 cut(s) 408, 513, 842
BstFNI CGCG 1 cut(s) 536
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 2 cut(s) 150, 749
BstMAI GTCTC 2 cut(s) 255, 769
BstMBI GATC 2 cut(s) 147, 746
BstMWI GCNNNNNNNGC 1 cut(s) 601
BstNI CCWGG 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 977
BstSCI CCNGG 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 875
BstUI CGCG 1 cut(s) 536
BstV1I GCAGC 1 cut(s) 889
BstX2I RGATCY 1 cut(s) 746
BstXI CCANNNNNNTGG 1 cut(s) 727
BstYI RGATCY 1 cut(s) 746
BsuI GTATCC 1 cut(s) 298
BtgI CCRYGG 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 836
BtsCI GGATG 3 cut(s) 408, 513, 842
BtsI GCAGTG 1 cut(s) 872
BtsIMutI CAGTG 4 cut(s) 348, 404, 750, 872
Cac8I GCNNGC 1 cut(s) 540
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 1 cut(s) 680
Csp6I GTAC 4 cut(s) 19, 32, 709, 922
CviAII CATG 2 cut(s) 907, 974
CviQI GTAC 4 cut(s) 19, 32, 709, 922
DdeI CTNAG 2 cut(s) 57, 520
DpnI GATC 2 cut(s) 149, 748
DpnII GATC 2 cut(s) 147, 746
DrdI GACNNNNNNGTC 1 cut(s) 794
DseDI GACNNNNNNGTC 1 cut(s) 794
Eam1104I CTCTTC 2 cut(s) 218, 563
EarI CTCTTC 2 cut(s) 218, 563
Eco130I CCWWGG 1 cut(s) 683
Eco31I GGTCTC 1 cut(s) 769
Eco47I GGWCC 1 cut(s) 680
Eco57I CTGAAG 2 cut(s) 153, 380
EcoO109I RGGNCCY 1 cut(s) 680
EcoRII CCWGG 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 683
EcoT22I ATGCAT 1 cut(s) 905
ErhI CCWWGG 1 cut(s) 683
Esp3I CGTCTC 1 cut(s) 255
FaeI CATG 2 cut(s) 910, 977
FatI CATG 2 cut(s) 906, 973
FauNDI CATATG 2 cut(s) 899, 918
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 6, 878
FokI GGATG 3 cut(s) 415, 500, 829
Fsp4HI GCNGC 2 cut(s) 6, 878
FspBI CTAG 1 cut(s) 539
GlaI GCGC 1 cut(s) 537
GluI GCNGC 2 cut(s) 6, 878
GsaI CCCAGC 1 cut(s) 512
GsuI CTGGAG 1 cut(s) 190
HhaI GCGC 1 cut(s) 538
Hin1II CATG 2 cut(s) 910, 977
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 5 cut(s) 64, 473, 546, 739, 1016
HphI GGTGA 2 cut(s) 31, 709
Hpy166II GTNNAC 3 cut(s) 312, 623, 949
Hpy188I TCNGA 6 cut(s) 264, 321, 564, 662, 738, 746
Hpy188III TCNNGA 2 cut(s) 169, 1020
Hpy8I GTNNAC 3 cut(s) 312, 623, 949
HpyCH4III ACNGT 2 cut(s) 118, 360
HpyCH4IV ACGT 4 cut(s) 308, 614, 633, 694
HpyCH4V TGCA 6 cut(s) 280, 604, 785, 842, 877, 903
HpyF10VI GCNNNNNNNGC 1 cut(s) 601
HpyF3I CTNAG 2 cut(s) 57, 520
HpySE526I ACGT 4 cut(s) 308, 614, 633, 694
Hsp92II CATG 2 cut(s) 910, 977
HspAI GCGC 1 cut(s) 536
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 2 cut(s) 147, 746
LmnI GCTCC 1 cut(s) 934
Lsp1109I GCAGC 1 cut(s) 889
LweI GCATC 6 cut(s) 168, 522, 723, 813, 851, 912
MaeI CTAG 1 cut(s) 539
MaeII ACGT 4 cut(s) 308, 614, 633, 694
MaeIII GTNAC 3 cut(s) 343, 909, 958
MalI GATC 2 cut(s) 149, 748
MboI GATC 2 cut(s) 147, 746
MboII GAAGA 5 cut(s) 180, 235, 349, 580, 1016
MfeI CAATTG 1 cut(s) 408
MflI RGATCY 1 cut(s) 746
MluCI AATT 2 cut(s) 331, 408
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 4 cut(s) 86, 202, 527, 942
Mph1103I ATGCAT 1 cut(s) 905
MseI TTAA 4 cut(s) 141, 447, 773, 986
MslI CAYNNNNRTG 2 cut(s) 273, 944
MspA1I CMGCKG 1 cut(s) 524
MspR9I CCNGG 1 cut(s) 443
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 1 cut(s) 536
MwoI GCNNNNNNNGC 1 cut(s) 601
NdeI CATATG 2 cut(s) 899, 918
NdeII GATC 2 cut(s) 147, 746
NheI GCTAGC 1 cut(s) 538
NlaIII CATG 2 cut(s) 910, 977
NlaIV GGNNCC 3 cut(s) 489, 681, 748
NmuCI GTSAC 3 cut(s) 343, 909, 958
NsiI ATGCAT 1 cut(s) 905
NspI RCATGY 1 cut(s) 977
OliI CACNNNNGTG 1 cut(s) 944
PfeI GAWTC 5 cut(s) 64, 473, 546, 739, 1016
PkrI GCNGC 2 cut(s) 7, 879
PpuMI RGGWCCY 1 cut(s) 680
PsiI TTATAA 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 680
Psp6I CCWGG 1 cut(s) 441
PspFI CCCAGC 1 cut(s) 508
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 3 cut(s) 489, 681, 748
PspPI GGNCC 1 cut(s) 680
PspPPI RGGWCCY 1 cut(s) 680
PstI CTGCAG 1 cut(s) 879
PsuI RGATCY 1 cut(s) 746
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 4 cut(s) 20, 33, 710, 923
RsaNI GTAC 4 cut(s) 19, 32, 709, 922
RseI CAYNNNNRTG 2 cut(s) 273, 944
SaqAI TTAA 4 cut(s) 141, 447, 773, 986
SatI GCNGC 2 cut(s) 6, 878
Sau3AI GATC 2 cut(s) 147, 746
Sau96I GGNCC 1 cut(s) 680
ScaI AGTACT 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 443
SfaNI GCATC 6 cut(s) 168, 522, 723, 813, 851, 912
SfcI CTRYAG 1 cut(s) 875
SinI GGWCC 1 cut(s) 680
SmiMI CAYNNNNRTG 2 cut(s) 273, 944
Sse9I AATT 2 cut(s) 331, 408
SsiI CCGC 3 cut(s) 5, 181, 534
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 441
StyI CCWWGG 1 cut(s) 683
TaaI ACNGT 2 cut(s) 118, 360
TaiI ACGT 4 cut(s) 311, 617, 636, 697
TaqI TCGA 1 cut(s) 640
TasI AATT 2 cut(s) 331, 408
TatI WGTACW 2 cut(s) 31, 921
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 5 cut(s) 64, 473, 546, 739, 1016
Tru1I TTAA 4 cut(s) 141, 447, 773, 986
Tru9I TTAA 4 cut(s) 141, 447, 773, 986
TscAI CASTG 4 cut(s) 355, 404, 757, 879
TseFI GTSAC 3 cut(s) 343, 909, 958
TseI GCWGC 1 cut(s) 877
Tsp45I GTSAC 3 cut(s) 343, 909, 958
TspDTI ATGAA 2 cut(s) 581, 791
TspGWI ACGGA 2 cut(s) 230, 237
TspRI CASTG 4 cut(s) 355, 404, 757, 879
VpaK11BI GGWCC 1 cut(s) 680
XceI RCATGY 1 cut(s) 977
XcmI CCANNNNNNNNNTGG 1 cut(s) 757
XspI CTAG 1 cut(s) 539
ZrmI AGTACT 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.